
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  133 (  133),  selected  132 , name T0307TS393_4
# Molecule2: number of CA atoms  132 ( 1005),  selected  132 , name T0307.pdb
# PARAMETERS: T0307TS393_4.T0307.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26         8 - 33          4.61    32.49
  LONGEST_CONTINUOUS_SEGMENT:    26         9 - 34          4.69    32.29
  LCS_AVERAGE:     17.74

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        13 - 32          1.99    28.26
  LCS_AVERAGE:     11.77

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        15 - 31          0.95    28.37
  LONGEST_CONTINUOUS_SEGMENT:    17        80 - 96          0.51    45.70
  LCS_AVERAGE:      9.23

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  132
LCS_GDT     M       1     M       1      3   10   13     3    3    3    7    9   10   11   11   13   14   16   17   18   21   21   22   22   25   28   32 
LCS_GDT     G       2     G       2      4   10   13     3    3    5    7    9   10   11   12   14   14   16   21   22   23   26   27   32   37   38   43 
LCS_GDT     L       3     L       3      4   10   13     3    3    5    7    9   10   11   12   14   14   19   22   25   26   29   31   34   39   43   45 
LCS_GDT     G       4     G       4      4   10   13     0    3    5    7    9   10   11   12   14   16   17   21   25   26   29   31   34   39   43   45 
LCS_GDT     R       5     R       5      4   10   13     3    4    4    7    9   10   11   12   14   16   17   21   25   30   33   38   41   44   46   48 
LCS_GDT     Q       6     Q       6      5   10   13     3    4    5    7    9   10   11   12   14   18   22   25   28   32   33   38   41   44   46   48 
LCS_GDT     S       7     S       7      5   10   16     3    4    5    7    9   14   18   19   20   22   23   26   28   32   34   38   41   44   46   48 
LCS_GDT     L       8     L       8      6   10   26     3    4    6    9   17   18   19   22   22   22   24   26   28   32   34   38   41   44   46   48 
LCS_GDT     N       9     N       9      6   10   26     3    7    7    8   14   18   19   22   22   23   27   28   28   32   34   38   41   44   46   48 
LCS_GDT     I      10     I      10      6   10   26     3    7    7    8   13   14   19   22   23   25   27   28   28   32   34   38   41   44   46   48 
LCS_GDT     M      11     M      11      6    8   26     3    7    7    8   13   14   15   22   23   25   27   28   28   32   34   38   41   44   46   48 
LCS_GDT     T      12     T      12      6    8   26     3    7    7    8   13   14   15   19   23   25   27   28   28   32   33   38   41   44   46   48 
LCS_GDT     F      13     F      13      6   20   26     3    7    7    7   13   17   19   20   23   25   27   28   28   32   33   38   41   44   46   48 
LCS_GDT     S      14     S      14      6   20   26     3    7    7    8   15   18   19   20   23   25   27   28   28   32   33   38   41   44   46   48 
LCS_GDT     G      15     G      15     17   20   26    15   16   17   17   17   19   19   20   23   25   27   28   28   32   34   38   41   44   46   48 
LCS_GDT     Q      16     Q      16     17   20   26    15   16   17   17   17   19   19   20   21   25   27   28   28   30   33   35   39   41   45   48 
LCS_GDT     E      17     E      17     17   20   26    15   16   17   17   17   19   19   20   23   25   27   28   28   32   34   37   41   44   46   48 
LCS_GDT     L      18     L      18     17   20   26    15   16   17   17   17   19   19   22   23   25   27   28   28   32   34   38   41   44   46   48 
LCS_GDT     T      19     T      19     17   20   26    15   16   17   17   17   19   19   20   23   25   27   28   28   30   34   35   39   41   45   48 
LCS_GDT     A      20     A      20     17   20   26    15   16   17   17   17   19   19   20   22   25   27   28   28   30   33   35   36   38   43   47 
LCS_GDT     I      21     I      21     17   20   26    15   16   17   17   17   19   19   20   23   25   27   28   28   30   33   35   39   41   45   48 
LCS_GDT     I      22     I      22     17   20   26    15   16   17   17   17   19   19   20   23   25   27   28   28   30   33   35   36   37   41   45 
LCS_GDT     K      23     K      23     17   20   26    15   16   17   17   17   19   19   20   23   25   27   28   28   30   33   35   36   36   36   39 
LCS_GDT     M      24     M      24     17   20   26    15   16   17   17   17   19   19   20   23   25   27   28   28   30   33   35   36   36   36   39 
LCS_GDT     A      25     A      25     17   20   26    15   16   17   17   17   19   19   20   23   25   27   28   28   30   33   35   36   36   36   39 
LCS_GDT     K      26     K      26     17   20   26    15   16   17   17   17   19   19   20   23   25   27   28   28   30   33   35   36   36   36   39 
LCS_GDT     S      27     S      27     17   20   26    15   16   17   17   17   19   19   20   23   25   27   28   28   30   33   35   36   36   36   38 
LCS_GDT     M      28     M      28     17   20   26    15   16   17   17   17   19   19   20   23   25   27   28   28   30   33   35   36   36   36   38 
LCS_GDT     V      29     V      29     17   20   26    15   16   17   17   17   19   19   20   23   25   27   28   28   29   33   35   36   36   36   38 
LCS_GDT     M      30     M      30     17   20   26    10   16   17   17   17   19   19   20   23   25   27   28   28   29   33   35   36   36   36   38 
LCS_GDT     A      31     A      31     17   20   26     0    3    3    6   17   19   19   20   23   25   27   28   28   29   30   35   36   36   36   38 
LCS_GDT     D      32     D      32      0   20   26     0    0    3    6   12   19   19   20   23   25   27   28   28   29   30   30   31   32   33   35 
LCS_GDT     G      33     G      33      3   19   26     0    3    4    6    6    7   18   20   21   23   24   26   27   28   30   30   31   32   33   35 
LCS_GDT     K      34     K      34      3    7   26     0    3    4    6    6    7    8    8    9   14   22   23   24   25   25   29   31   32   33   35 
LCS_GDT     I      35     I      35      3    7   24     1    3    4    6    6    7    8    8    9   13   15   18   19   20   21   22   23   25   25   30 
LCS_GDT     K      36     K      36      3   15   22     3    3    4    6    6   11   12   15   17   17   18   19   21   21   22   23   24   25   26   30 
LCS_GDT     P      37     P      37     15   16   22     9   12   15   15   15   15   16   16   17   17   18   19   21   21   22   23   24   25   26   26 
LCS_GDT     A      38     A      38     15   16   22     9   12   15   15   15   15   16   16   17   17   18   19   21   21   22   23   24   25   26   30 
LCS_GDT     E      39     E      39     15   16   22     9   12   15   15   15   15   16   16   17   17   18   19   21   21   22   23   24   25   26   26 
LCS_GDT     I      40     I      40     15   16   22     9   12   15   15   15   15   16   16   17   17   18   19   21   21   22   23   24   25   26   26 
LCS_GDT     A      41     A      41     15   16   22     9   12   15   15   15   15   16   16   17   17   18   19   21   21   22   23   24   25   26   30 
LCS_GDT     V      42     V      42     15   16   22     9   12   15   15   15   15   16   16   17   17   18   19   21   21   22   23   24   25   26   30 
LCS_GDT     M      43     M      43     15   16   22     9   12   15   15   15   15   16   16   17   17   18   19   21   21   22   23   24   25   26   30 
LCS_GDT     T      44     T      44     15   16   22     9   12   15   15   15   15   16   16   17   17   18   19   21   21   22   23   24   25   26   29 
LCS_GDT     R      45     R      45     15   16   22     9   12   15   15   15   15   16   16   17   17   18   19   21   21   22   23   24   25   29   32 
LCS_GDT     E      46     E      46     15   16   22     5   12   15   15   15   15   16   16   17   17   18   19   21   21   22   23   24   25   29   32 
LCS_GDT     F      47     F      47     15   16   22     9   12   15   15   15   15   16   16   17   17   18   19   21   21   22   23   24   25   27   30 
LCS_GDT     M      48     M      48     15   16   22     4   11   15   15   15   15   16   16   17   17   18   19   21   21   22   25   28   32   35   39 
LCS_GDT     R      49     R      49     15   16   22     4    5   15   15   15   15   16   16   17   17   18   19   21   21   22   24   28   32   35   39 
LCS_GDT     F      50     F      50     15   16   22     4   12   15   15   15   15   16   16   17   17   18   18   19   21   22   24   25   27   29   31 
LCS_GDT     G      51     G      51     15   16   22     4    4   15   15   15   15   16   16   17   17   18   20   20   22   24   26   29   32   35   39 
LCS_GDT     I      52     I      52      3   16   23     3    3    5    9   14   15   16   16   17   17   20   21   24   26   29   34   36   37   40   44 
LCS_GDT     L      53     L      53     13   16   23     5   10   13   15   16   16   16   18   19   20   21   23   24   26   29   34   36   37   40   44 
LCS_GDT     Q      54     Q      54     13   16   23     5   10   13   15   16   16   16   18   19   20   21   23   24   25   25   27   29   37   40   44 
LCS_GDT     D      55     D      55     13   16   23     5    9   13   15   16   16   16   18   19   20   21   23   24   25   25   27   29   33   35   44 
LCS_GDT     Q      56     Q      56     13   16   23     8   12   13   15   16   16   16   18   19   20   21   23   25   26   29   34   36   37   40   44 
LCS_GDT     V      57     V      57     13   16   23     8   12   13   15   16   16   16   18   19   20   21   23   25   26   30   34   36   37   40   44 
LCS_GDT     D      58     D      58     13   16   23     8   12   13   15   16   16   16   18   19   20   21   23   25   26   30   35   36   37   40   44 
LCS_GDT     L      59     L      59     13   16   23     8   12   13   15   16   16   16   18   19   20   21   23   25   26   30   31   36   37   40   44 
LCS_GDT     L      60     L      60     13   16   23     8   12   13   15   16   16   16   18   19   22   24   26   28   30   33   35   36   39   41   45 
LCS_GDT     L      61     L      61     13   16   23     8   12   13   15   16   16   16   18   21   23   24   26   28   30   33   35   36   39   41   45 
LCS_GDT     K      62     K      62     13   16   23     8   12   13   15   16   16   16   18   23   25   27   28   28   30   33   35   36   38   41   45 
LCS_GDT     A      63     A      63     13   16   23     8   12   13   15   16   16   16   18   23   25   27   28   28   29   31   32   36   39   41   45 
LCS_GDT     S      64     S      64     13   16   23     8   12   13   15   17   18   19   22   23   25   27   28   28   30   34   35   39   41   45   48 
LCS_GDT     D      65     D      65     13   16   23     3   12   13   15   16   16   19   22   22   22   26   28   28   29   31   35   39   41   45   48 
LCS_GDT     S      66     S      66     13   16   23     3   12   12   15   16   16   16   18   19   20   21   23   28   29   30   32   34   38   41   45 
LCS_GDT     I      67     I      67     13   16   23     3   12   12   15   16   16   16   18   19   20   21   23   24   25   26   30   40   43   45   48 
LCS_GDT     E      68     E      68     13   16   23    10   12   12   12   16   16   16   18   19   20   24   26   28   32   34   38   41   44   46   48 
LCS_GDT     A      69     A      69     12   14   23    10   12   12   12   13   13   15   17   19   21   24   26   28   32   34   38   41   44   46   48 
LCS_GDT     S      70     S      70     12   14   23    10   12   12   12   13   13   14   15   17   20   24   26   28   32   33   38   41   44   46   48 
LCS_GDT     Q      71     Q      71     12   14   23    10   12   12   12   13   13   16   17   19   20   21   24   25   30   33   38   40   44   46   48 
LCS_GDT     A      72     A      72     12   14   23    10   12   12   12   13   13   14   15   17   17   19   21   22   25   33   38   41   44   46   48 
LCS_GDT     V      73     V      73     12   14   23    10   12   12   12   13   13   14   15   17   17   19   19   21   24   28   33   35   44   46   47 
LCS_GDT     A      74     A      74     12   14   23    10   12   12   12   13   13   14   15   17   18   19   21   22   26   28   31   33   39   43   45 
LCS_GDT     L      75     L      75     12   14   23    10   12   12   12   13   13   14   15   17   17   19   19   21   22   23   25   30   33   38   43 
LCS_GDT     I      76     I      76     12   14   24    10   12   12   12   13   13   14   15   17   17   19   19   21   22   23   25   25   28   29   34 
LCS_GDT     A      77     A      77     12   14   24    10   12   12   12   13   13   14   15   17   17   19   21   21   22   23   25   25   28   29   31 
LCS_GDT     R      78     R      78     12   14   24    10   12   12   12   13   13   14   15   17   18   19   21   21   22   23   25   25   28   29   31 
LCS_GDT     M      79     M      79     12   18   24     5   12   12   12   13   13   17   18   19   19   19   21   21   22   23   25   25   27   28   29 
LCS_GDT     D      80     D      80     17   18   24     9   16   17   17   17   17   17   18   19   19   19   21   21   22   23   25   25   27   28   29 
LCS_GDT     E      81     E      81     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   25   25   27   28   29 
LCS_GDT     E      82     E      82     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   25   25   27   28   29 
LCS_GDT     R      83     R      83     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   22   23   25   25   27   28   29 
LCS_GDT     K      84     K      84     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   25   25   27   28   29 
LCS_GDT     K      85     K      85     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   27   28   29 
LCS_GDT     Y      86     Y      86     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     V      87     V      87     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     A      88     A      88     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     S      89     S      89     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     Y      90     Y      90     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     L      91     L      91     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     G      92     G      92     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     V      93     V      93     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     I      94     I      94     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     M      95     M      95     17   18   24     4   15   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     A      96     A      96     17   18   24    14   16   17   17   17   17   17   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     S      97     S      97      3   18   24     0    3    3    5    6    6   13   18   19   19   19   21   21   21   23   24   25   25   28   29 
LCS_GDT     D      98     D      98      3    7   24     0    2    3    5    6    7    7    7   10   10   13   16   20   21   23   24   25   25   31   34 
LCS_GDT     G      99     G      99      4    7   24     0    3    6    6    6    7    7    8   10   12   17   17   20   21   22   24   25   30   33   37 
LCS_GDT     D     100     D     100      4    7   23     0    3    6    6    6    7    7    8   10   14   15   16   18   23   26   32   35   38   40   42 
LCS_GDT     I     101     I     101      4    7   19     1    3    6    6    6    7    7    8   12   14   15   17   21   24   27   33   35   38   42   47 
LCS_GDT     D     102     D     102      4   16   20     0    3    6   13   14   16   19   22   22   22   24   26   28   30   34   37   39   44   46   48 
LCS_GDT     D     103     D     103     14   16   25    13   13   13   14   17   18   19   22   22   22   24   26   28   30   34   37   40   44   46   48 
LCS_GDT     N     104     N     104     14   16   25    13   13   13   14   17   18   19   22   22   22   24   26   28   30   34   38   41   44   46   48 
LCS_GDT     E     105     E     105     14   16   25    13   13   13   14   17   18   19   22   22   22   24   26   28   30   34   38   41   44   46   48 
LCS_GDT     L     106     L     106     14   16   25    13   13   13   14   17   18   19   22   22   22   24   26   28   32   34   38   41   44   46   48 
LCS_GDT     A     107     A     107     14   16   25    13   13   13   14   17   18   19   22   22   22   24   26   28   32   34   38   41   44   46   48 
LCS_GDT     L     108     L     108     14   16   25    13   13   13   14   17   18   19   22   22   22   24   26   28   32   34   38   41   44   46   48 
LCS_GDT     W     109     W     109     14   16   25    13   13   13   14   17   18   19   22   22   22   24   26   28   32   34   38   41   44   46   48 
LCS_GDT     T     110     T     110     14   16   25    13   13   13   14   17   18   19   22   22   22   24   26   28   32   34   38   41   44   46   48 
LCS_GDT     L     111     L     111     14   16   25    13   13   13   14   17   18   19   22   22   22   24   26   28   32   34   38   41   44   46   48 
LCS_GDT     I     112     I     112     14   16   25    13   13   13   14   17   18   19   22   22   22   24   26   28   32   34   38   41   44   46   48 
LCS_GDT     S     113     S     113     14   16   25    13   13   13   14   17   18   19   22   22   22   24   26   28   32   34   38   41   44   46   48 
LCS_GDT     T     114     T     114     14   16   25    13   13   13   14   17   18   19   22   22   22   24   26   28   32   34   38   41   44   46   48 
LCS_GDT     L     115     L     115     14   16   25    13   13   13   14   17   18   19   22   22   22   24   26   28   32   34   38   41   44   46   48 
LCS_GDT     C     116     C     116     14   16   25     3    4    8   14   17   18   19   22   22   22   24   26   28   32   34   38   41   44   46   48 
LCS_GDT     G     117     G     117      4   16   25     3    4    7   14   15   16   16   18   21   22   23   26   28   32   34   38   41   44   46   48 
LCS_GDT     L     118     L     118      4   12   25     3    4    5    6    9   15   17   19   21   21   22   24   27   28   31   35   40   43   46   48 
LCS_GDT     P     119     P     119      4   14   25     3    4    6   15   17   19   19   20   21   21   23   24   27   32   33   34   41   44   46   48 
LCS_GDT     T     120     T     120      5   14   25     3   16   17   17   17   18   19   20   21   21   23   24   27   32   33   34   41   44   46   48 
LCS_GDT     M     121     M     121     12   14   25     3    4   11   12   12   13   14   20   21   21   22   24   27   32   33   38   41   44   46   48 
LCS_GDT     T     122     T     122     12   14   25     8   10   11   12   12   13   14   15   16   17   21   23   24   28   33   35   36   39   43   45 
LCS_GDT     V     123     V     123     12   14   25     9   10   11   12   12   13   14   15   16   19   22   24   28   30   33   35   36   41   44   47 
LCS_GDT     M     124     M     124     12   14   25     9   10   11   12   12   13   14   15   16   18   22   24   27   30   31   34   36   39   43   47 
LCS_GDT     E     125     E     125     12   14   25     9   10   11   12   12   13   14   15   16   16   21   24   26   28   33   35   41   44   46   48 
LCS_GDT     A     126     A     126     12   14   25     9   10   11   12   12   13   14   15   19   20   22   25   28   32   34   38   41   44   46   48 
LCS_GDT     I     127     I     127     12   14   25     9   10   11   12   12   13   14   15   19   20   22   25   28   32   34   38   41   44   46   48 
LCS_GDT     N     128     N     128     12   14   24     9   10   11   12   12   13   14   15   16   17   20   24   28   30   34   38   41   44   46   48 
LCS_GDT     N     129     N     129     12   14   20     9   10   11   12   12   13   14   15   16   16   16   21   28   30   34   38   41   44   46   48 
LCS_GDT     M     130     M     130     12   14   20     9   10   11   12   12   13   14   15   16   19   22   24   28   30   34   38   41   44   46   48 
LCS_GDT     K     131     K     131     12   14   20     9   10   11   12   12   13   14   15   16   19   22   24   28   30   34   38   41   44   46   48 
LCS_GDT     N     132     N     132     12   14   20     0    3    3   11   12   13   14   15   16   16   22   24   28   30   33   35   37   39   43   48 
LCS_AVERAGE  LCS_A:  12.91  (   9.23   11.77   17.74 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     16     17     17     17     19     19     22     23     25     27     28     28     32     34     38     41     44     46     48 
GDT PERCENT_CA  11.36  12.12  12.88  12.88  12.88  14.39  14.39  16.67  17.42  18.94  20.45  21.21  21.21  24.24  25.76  28.79  31.06  33.33  34.85  36.36
GDT RMS_LOCAL    0.29   0.32   0.51   0.51   0.51   1.49   1.49   2.55   3.46   3.54   3.83   3.95   3.96   4.99   5.24   5.78   6.01   6.24   6.42   6.65
GDT RMS_ALL_CA  28.25  28.20  45.70  45.70  45.70  28.57  28.57  25.34  31.88  31.76  31.98  32.01  24.45  28.07  26.10  27.80  27.67  27.55  27.58  27.21

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         42.582
LGA    G       2      G       2         36.327
LGA    L       3      L       3         29.898
LGA    G       4      G       4         26.108
LGA    R       5      R       5         18.535
LGA    Q       6      Q       6         13.331
LGA    S       7      S       7          8.094
LGA    L       8      L       8          3.833
LGA    N       9      N       9          1.131
LGA    I      10      I      10          3.281
LGA    M      11      M      11          3.958
LGA    T      12      T      12          7.752
LGA    F      13      F      13          9.020
LGA    S      14      S      14         11.322
LGA    G      15      G      15          7.795
LGA    Q      16      Q      16          9.569
LGA    E      17      E      17          5.468
LGA    L      18      L      18          0.926
LGA    T      19      T      19          6.313
LGA    A      20      A      20          9.148
LGA    I      21      I      21          7.682
LGA    I      22      I      22         11.047
LGA    K      23      K      23         15.082
LGA    M      24      M      24         16.040
LGA    A      25      A      25         17.895
LGA    K      26      K      26         21.338
LGA    S      27      S      27         24.165
LGA    M      28      M      28         25.035
LGA    V      29      V      29         28.363
LGA    M      30      M      30         31.618
LGA    A      31      A      31         35.084
LGA    D      32      D      32         42.272
LGA    G      33      G      33         45.213
LGA    K      34      K      34         50.844
LGA    I      35      I      35         53.497
LGA    K      36      K      36         58.219
LGA    P      37      P      37         59.407
LGA    A      38      A      38         58.689
LGA    E      39      E      39         54.523
LGA    I      40      I      40         50.632
LGA    A      41      A      41         50.496
LGA    V      42      V      42         48.161
LGA    M      43      M      43         43.676
LGA    T      44      T      44         41.605
LGA    R      45      R      45         41.862
LGA    E      46      E      46         38.898
LGA    F      47      F      47         35.082
LGA    M      48      M      48         34.650
LGA    R      49      R      49         32.710
LGA    F      50      F      50         28.576
LGA    G      51      G      51         29.209
LGA    I      52      I      52         25.744
LGA    L      53      L      53         24.281
LGA    Q      54      Q      54         25.934
LGA    D      55      D      55         25.540
LGA    Q      56      Q      56         19.368
LGA    V      57      V      57         17.088
LGA    D      58      D      58         17.908
LGA    L      59      L      59         15.722
LGA    L      60      L      60          9.928
LGA    L      61      L      61          9.652
LGA    K      62      K      62         10.936
LGA    A      63      A      63          8.541
LGA    S      64      S      64          2.335
LGA    D      65      D      65          3.508
LGA    S      66      S      66          8.648
LGA    I      67      I      67          8.223
LGA    E      68      E      68          9.261
LGA    A      69      A      69          7.076
LGA    S      70      S      70         10.292
LGA    Q      71      Q      71         15.055
LGA    A      72      A      72         15.045
LGA    V      73      V      73         15.327
LGA    A      74      A      74         19.550
LGA    L      75      L      75         22.639
LGA    I      76      I      76         22.996
LGA    A      77      A      77         23.509
LGA    R      78      R      78         28.338
LGA    M      79      M      79         31.076
LGA    D      80      D      80         34.081
LGA    E      81      E      81         31.077
LGA    E      82      E      82         32.974
LGA    R      83      R      83         34.418
LGA    K      84      K      84         31.907
LGA    K      85      K      85         30.481
LGA    Y      86      Y      86         32.904
LGA    V      87      V      87         33.316
LGA    A      88      A      88         30.442
LGA    S      89      S      89         30.712
LGA    Y      90      Y      90         33.208
LGA    L      91      L      91         32.124
LGA    G      92      G      92         29.920
LGA    V      93      V      93         31.316
LGA    I      94      I      94         33.139
LGA    M      95      M      95         30.435
LGA    A      96      A      96         29.945
LGA    S      97      S      97         24.573
LGA    D      98      D      98         21.422
LGA    G      99      G      99         19.774
LGA    D     100      D     100         13.518
LGA    I     101      I     101          9.759
LGA    D     102      D     102          3.402
LGA    D     103      D     103          1.325
LGA    N     104      N     104          3.173
LGA    E     105      E     105          2.931
LGA    L     106      L     106          0.843
LGA    A     107      A     107          1.677
LGA    L     108      L     108          2.564
LGA    W     109      W     109          1.881
LGA    T     110      T     110          1.341
LGA    L     111      L     111          2.203
LGA    I     112      I     112          2.016
LGA    S     113      S     113          1.865
LGA    T     114      T     114          2.646
LGA    L     115      L     115          2.233
LGA    C     116      C     116          3.151
LGA    G     117      G     117          6.714
LGA    L     118      L     118         13.242
LGA    P     119      P     119         15.098
LGA    T     120      T     120         15.075
LGA    M     121      M     121         14.975
LGA    T     122      T     122         18.061
LGA    V     123      V     123         17.321
LGA    M     124      M     124         17.149
LGA    E     125      E     125         14.113
LGA    A     126      A     126         11.307
LGA    I     127      I     127         12.350
LGA    N     128      N     128         10.943
LGA    N     129      N     129         10.359
LGA    M     130      M     130         11.109
LGA    K     131      K     131         10.567
LGA    N     132      N     132         10.428

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  133  132    4.0     22    2.55    17.614    15.627     0.831

LGA_LOCAL      RMSD =  2.547  Number of atoms =   22  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 25.343  Number of atoms =  132 
Std_ALL_ATOMS  RMSD = 22.943  (standard rmsd on all 132 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.393054 * X  +  -0.851490 * Y  +  -0.347092 * Z  +  23.581903
  Y_new =  -0.890114 * X  +  -0.257647 * Y  +  -0.375920 * Z  +   7.758282
  Z_new =   0.230665 * X  +   0.456708 * Y  +  -0.859192 * Z  +  33.076431 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.653021   -0.488572  [ DEG:   152.0069    -27.9931 ]
  Theta =  -0.232762   -2.908831  [ DEG:   -13.3363   -166.6637 ]
  Phi   =  -1.154969    1.986624  [ DEG:   -66.1748    113.8252 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0307TS393_4                                  
REMARK     2: T0307.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0307TS393_4.T0307.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  133  132   4.0   22   2.55  15.627    22.94
REMARK  ---------------------------------------------------------- 
MOLECULE T0307TS393_4
PFRMAT TS
TARGET T0307
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1      18.836  19.555  61.544  1.00 25.00           C
ATOM      2  CA  GLY     2      15.836  17.288  60.976  1.00 25.00           C
ATOM      3  CA  LEU     3      12.642  17.097  58.972  1.00 25.00           C
ATOM      4  CA  GLY     4      12.660  19.433  55.927  1.00 25.00           C
ATOM      5  CA  ARG     5       9.427  18.840  53.906  1.00 25.00           C
ATOM      6  CA  GLN     6       6.446  19.583  51.595  1.00 25.00           C
ATOM      7  CA  SER     7       4.930  18.224  48.347  1.00 25.00           C
ATOM      8  CA  LEU     8       4.612  17.178  44.726  1.00 25.00           C
ATOM      9  CA  ASN     9       4.637  15.880  41.145  1.00 25.00           C
ATOM     10  CA  ILE    10       6.154  16.462  37.679  1.00 25.00           C
ATOM     11  CA  MET    11       8.883  15.615  35.175  1.00 25.00           C
ATOM     12  CA  THR    12      11.016  18.287  33.425  1.00 25.00           C
ATOM     13  CA  PHE    13      13.989  17.196  31.293  1.00 25.00           C
ATOM     14  CA  SER    14      16.279  20.172  31.883  1.00 25.00           C
ATOM     15  CA  GLY    15      18.919  17.796  33.104  1.00 25.00           C
ATOM     16  CA  GLN    16      16.866  17.565  36.329  1.00 25.00           C
ATOM     17  CA  GLU    17      17.038  13.741  36.193  1.00 25.00           C
ATOM     18  CA  LEU    18      20.832  13.905  35.700  1.00 25.00           C
ATOM     19  CA  THR    19      21.143  16.276  38.692  1.00 25.00           C
ATOM     20  CA  ALA    20      19.041  13.893  40.830  1.00 25.00           C
ATOM     21  CA  ILE    21      21.261  10.953  39.780  1.00 25.00           C
ATOM     22  CA  ILE    22      24.392  12.961  40.691  1.00 25.00           C
ATOM     23  CA  LYS    23      22.886  13.807  44.108  1.00 25.00           C
ATOM     24  CA  MET    24      22.078  10.110  44.695  1.00 25.00           C
ATOM     25  CA  ALA    25      25.666   9.152  43.758  1.00 25.00           C
ATOM     26  CA  LYS    26      27.029  11.787  46.181  1.00 25.00           C
ATOM     27  CA  SER    27      24.769  10.434  48.961  1.00 25.00           C
ATOM     28  CA  MET    28      25.992   6.874  48.257  1.00 25.00           C
ATOM     29  CA  VAL    29      29.627   8.066  48.406  1.00 25.00           C
ATOM     30  CA  MET    30      28.943   9.817  51.743  1.00 25.00           C
ATOM     31  CA  ALA    31      31.112   8.954  54.699  1.00 25.00           C
ATOM     32  CA  ASP    32      33.064   9.467  57.925  1.00 25.00           C
ATOM     33  CA  GLY    33      35.183  10.199  61.000  1.00 25.00           C
ATOM     34  CA  LYS    34      36.795  11.520  64.125  1.00 25.00           C
ATOM     35  CA  ILE    35      38.854  13.010  67.011  1.00 25.00           C
ATOM     36  CA  LYS    36      40.356  15.470  69.533  1.00 25.00           C
ATOM     37  CA  PRO    37      41.010  18.800  71.346  1.00 25.00           C
ATOM     38  CA  ALA    38      37.339  19.406  70.439  1.00 25.00           C
ATOM     39  CA  GLU    39      38.387  22.008  67.832  1.00 25.00           C
ATOM     40  CA  ILE    40      40.912  19.540  66.348  1.00 25.00           C
ATOM     41  CA  ALA    41      38.205  16.837  66.173  1.00 25.00           C
ATOM     42  CA  VAL    42      35.838  19.286  64.422  1.00 25.00           C
ATOM     43  CA  MET    43      38.585  20.181  61.908  1.00 25.00           C
ATOM     44  CA  THR    44      39.216  16.463  61.237  1.00 25.00           C
ATOM     45  CA  ARG    45      35.468  15.902  60.686  1.00 25.00           C
ATOM     46  CA  GLU    46      35.356  18.856  58.253  1.00 25.00           C
ATOM     47  CA  PHE    47      38.361  17.434  56.350  1.00 25.00           C
ATOM     48  CA  MET    48      36.648  14.015  56.149  1.00 25.00           C
ATOM     49  CA  ARG    49      33.456  15.667  54.824  1.00 25.00           C
ATOM     50  CA  PHE    50      35.496  17.555  52.190  1.00 25.00           C
ATOM     51  CA  GLY    51      37.198  14.290  51.133  1.00 25.00           C
ATOM     52  CA  ILE    52      33.784  12.579  50.837  1.00 25.00           C
ATOM     53  CA  LEU    53      32.486  15.480  48.700  1.00 25.00           C
ATOM     54  CA  GLN    54      35.569  15.225  46.441  1.00 25.00           C
ATOM     55  CA  ASP    55      35.013  11.455  46.066  1.00 25.00           C
ATOM     56  CA  GLN    56      31.342  12.060  45.159  1.00 25.00           C
ATOM     57  CA  VAL    57      32.391  14.663  42.552  1.00 25.00           C
ATOM     58  CA  ASP    58      34.916  12.195  41.068  1.00 25.00           C
ATOM     59  CA  LEU    59      32.209   9.492  40.893  1.00 25.00           C
ATOM     60  CA  LEU    60      29.841  11.940  39.142  1.00 25.00           C
ATOM     61  CA  LEU    61      32.588  12.835  36.628  1.00 25.00           C
ATOM     62  CA  LYS    62      33.219   9.118  35.956  1.00 25.00           C
ATOM     63  CA  ALA    63      29.471   8.556  35.406  1.00 25.00           C
ATOM     64  CA  SER    64      29.361  11.511  32.972  1.00 25.00           C
ATOM     65  CA  ASP    65      32.365  10.089  31.070  1.00 25.00           C
ATOM     66  CA  SER    66      30.650   6.669  30.869  1.00 25.00           C
ATOM     67  CA  ILE    67      27.459   8.321  29.544  1.00 25.00           C
ATOM     68  CA  GLU    68      29.500  10.208  26.909  1.00 25.00           C
ATOM     69  CA  ALA    69      31.200   6.944  25.852  1.00 25.00           C
ATOM     70  CA  SER    70      27.787   5.233  25.557  1.00 25.00           C
ATOM     71  CA  GLN    71      26.490   8.134  23.420  1.00 25.00           C
ATOM     72  CA  ALA    72      29.572   7.880  21.161  1.00 25.00           C
ATOM     73  CA  VAL    73      29.017   4.108  20.787  1.00 25.00           C
ATOM     74  CA  ALA    74      25.346   4.715  19.879  1.00 25.00           C
ATOM     75  CA  LEU    75      26.394   7.318  17.272  1.00 25.00           C
ATOM     76  CA  ILE    76      28.919   4.850  15.788  1.00 25.00           C
ATOM     77  CA  ALA    77      26.211   2.146  15.614  1.00 25.00           C
ATOM     78  CA  ARG    78      23.845   4.595  13.862  1.00 25.00           C
ATOM     79  CA  MET    79      26.592   5.490  11.348  1.00 25.00           C
ATOM     80  CA  ASP    80      27.222   1.772  10.676  1.00 25.00           C
ATOM     81  CA  GLU    81      23.474   1.211  10.127  1.00 25.00           C
ATOM     82  CA  GLU    82      23.364   4.166   7.692  1.00 25.00           C
ATOM     83  CA  ARG    83      26.368   2.743   5.791  1.00 25.00           C
ATOM     84  CA  LYS    84      24.653  -0.676   5.589  1.00 25.00           C
ATOM     85  CA  LYS    85      21.463   0.976   4.264  1.00 25.00           C
ATOM     86  CA  TYR    86      23.503   2.863   1.629  1.00 25.00           C
ATOM     87  CA  VAL    87      25.204  -0.403   0.573  1.00 25.00           C
ATOM     88  CA  ALA    88      21.790  -2.112   0.277  1.00 25.00           C
ATOM     89  CA  SER    89      20.493   0.789  -1.860  1.00 25.00           C
ATOM     90  CA  TYR    90      23.576   0.534  -4.119  1.00 25.00           C
ATOM     91  CA  LEU    91      23.020  -3.237  -4.494  1.00 25.00           C
ATOM     92  CA  GLY    92      19.349  -2.631  -5.402  1.00 25.00           C
ATOM     93  CA  VAL    93      20.398  -0.029  -8.008  1.00 25.00           C
ATOM     94  CA  ILE    94      22.922  -2.497  -9.491  1.00 25.00           C
ATOM     95  CA  MET    95      20.214  -5.199  -9.666  1.00 25.00           C
ATOM     96  CA  ALA    96      17.848  -2.751 -11.419  1.00 25.00           C
ATOM     97  CA  SER    97      16.044  -2.669  -8.103  1.00 25.00           C
ATOM     98  CA  ASP    98      14.965  -2.518  -4.401  1.00 25.00           C
ATOM     99  CA  GLY    99      14.970  -2.681  -0.569  1.00 25.00           C
ATOM    100  CA  ASP   100      15.256  -2.308   3.150  1.00 25.00           C
ATOM    101  CA  ILE   101      15.670  -2.122   6.970  1.00 25.00           C
ATOM    102  CA  ASP   102      16.249  -1.811  10.715  1.00 25.00           C
ATOM    103  CA  ASP   103      17.239  -1.416  14.367  1.00 25.00           C
ATOM    104  CA  ASN   104      19.626   1.196  15.833  1.00 25.00           C
ATOM    105  CA  GLU   105      16.860   2.454  18.163  1.00 25.00           C
ATOM    106  CA  LEU   106      16.145  -1.134  19.294  1.00 25.00           C
ATOM    107  CA  ALA   107      19.873  -1.687  19.977  1.00 25.00           C
ATOM    108  CA  LEU   108      20.004   1.553  22.014  1.00 25.00           C
ATOM    109  CA  TRP   109      16.943   0.440  24.029  1.00 25.00           C
ATOM    110  CA  THR   110      18.588  -2.955  24.697  1.00 25.00           C
ATOM    111  CA  LEU   111      21.789  -1.204  25.856  1.00 25.00           C
ATOM    112  CA  ILE   112      19.746   1.042  28.191  1.00 25.00           C
ATOM    113  CA  SER   113      17.965  -2.030  29.627  1.00 25.00           C
ATOM    114  CA  THR   114      21.339  -3.749  30.199  1.00 25.00           C
ATOM    115  CA  LEU   115      22.661  -0.622  31.970  1.00 25.00           C
ATOM    116  CA  CYS   116      22.467  -0.911  35.700  1.00 25.00           C
ATOM    117  CA  GLY   117      22.887  -4.579  36.535  1.00 25.00           C
ATOM    118  CA  LEU   118      25.044  -3.925  39.633  1.00 25.00           C
ATOM    119  CA  PRO   119      21.814  -4.527  41.587  1.00 25.00           C
ATOM    120  CA  THR   120      18.044  -4.718  40.773  1.00 25.00           C
ATOM    121  CA  MET   121      16.769  -2.616  37.860  1.00 25.00           C
ATOM    122  CA  THR   122      14.299   0.133  38.770  1.00 25.00           C
ATOM    123  CA  VAL   123      11.268  -1.017  36.732  1.00 25.00           C
ATOM    124  CA  MET   124      10.110   2.614  36.360  1.00 25.00           C
ATOM    125  CA  GLU   125      13.611   3.638  35.194  1.00 25.00           C
ATOM    126  CA  ALA   126      13.621   0.785  32.638  1.00 25.00           C
ATOM    127  CA  ILE   127      10.184   1.886  31.360  1.00 25.00           C
ATOM    128  CA  ASN   128      11.436   5.490  31.026  1.00 25.00           C
ATOM    129  CA  ASN   129      14.506   4.271  29.089  1.00 25.00           C
ATOM    130  CA  MET   130      12.256   2.224  26.762  1.00 25.00           C
ATOM    131  CA  LYS   131      10.348   5.426  26.117  1.00 25.00           C
ATOM    132  CA  ASN   132      11.363   8.516  24.116  1.00 25.00           C
ATOM    133  CA  LEU   133      14.764   8.702  25.731  1.00 25.00           C
TER
END
