
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  101 (  101),  selected  101 , name T0304TS393_1-D1
# Molecule2: number of CA atoms  101 (  799),  selected  101 , name T0304_D1.pdb
# PARAMETERS: T0304TS393_1-D1.T0304_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    41        46 - 86          4.99    17.09
  LONGEST_CONTINUOUS_SEGMENT:    41        47 - 87          4.87    16.82
  LONGEST_CONTINUOUS_SEGMENT:    41        48 - 88          4.74    16.49
  LONGEST_CONTINUOUS_SEGMENT:    41        49 - 89          4.99    15.99
  LCS_AVERAGE:     28.19

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23        56 - 78          1.99    14.73
  LCS_AVERAGE:     10.86

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16        63 - 78          0.86    14.06
  LCS_AVERAGE:      6.54

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  101
LCS_GDT     R      17     R      17      3    7   12     3    4    5    6    7    8    9   10   12   15   17   20   24   27   31   31   34   35   37   39 
LCS_GDT     P      18     P      18      4    7   12     3    3    4    6    7    8    9   10   11   15   17   20   24   27   31   31   34   35   37   39 
LCS_GDT     W      19     W      19      4    7   12     3    4    5    6    7    8    9   10   12   15   17   20   24   28   31   32   34   36   37   39 
LCS_GDT     W      20     W      20      4    7   12     3    4    4    6    7    8    9   10   11   15   17   20   24   28   31   31   34   35   37   39 
LCS_GDT     G      21     G      21      4    7   12     3    4    5    6    7    8    9   10   11   12   15   21   24   28   31   32   34   36   37   39 
LCS_GDT     L      22     L      22      5    7   12     3    4    5    6    7    8    9   10   15   19   19   22   24   28   31   32   34   36   38   44 
LCS_GDT     P      23     P      23      5    7   12     3    4    5    6    7    7   11   12   14   17   22   23   25   28   32   35   38   41   45   47 
LCS_GDT     C      24     C      24      5    7   13     3    4    5    6    7    8   11   12   14   17   22   23   25   27   31   35   38   41   45   47 
LCS_GDT     T      25     T      25      5    7   13     3    4    5    6    6    8    9   11   13   14   14   20   22   27   30   32   38   41   43   46 
LCS_GDT     V      26     V      26      5    7   13     3    4    5    6    6    7    8   10   10   14   15   15   18   27   30   32   36   41   43   46 
LCS_GDT     T      27     T      27      5    7   13     2    4    5    6    6    7    8    9   10   10   12   14   16   19   21   28   30   34   35   36 
LCS_GDT     P      28     P      28      5    7   13     3    3    5    6    6    7    8    9   10   10   12   14   16   19   22   28   30   34   35   36 
LCS_GDT     C      29     C      29      3    5   13     3    3    4    5    6    7    8    9   10   13   13   15   18   20   26   31   33   37   40   46 
LCS_GDT     F      30     F      30      3    5   13     3    3    4    5    6    9   10   11   12   13   13   14   18   25   32   35   38   42   46   49 
LCS_GDT     G      31     G      31      3    5   13     0    3    4    4    5    6    7    8   11   19   23   27   31   34   40   42   45   46   47   49 
LCS_GDT     A      32     A      32      3    4   13     3    3    4    4    6    6   10   22   29   31   35   36   37   40   43   44   45   47   48   49 
LCS_GDT     R      33     R      33      3    3   13     3    4    6   12   19   24   26   28   31   33   35   36   37   40   43   44   45   47   50   54 
LCS_GDT     L      34     L      34      3    3   13     3    3    4    7   17   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     V      35     V      35      3    3   13     3    3    3    4    5    9   12   15   19   21   28   30   34   37   40   43   46   47   52   54 
LCS_GDT     Q      36     Q      36      3    4   15     3    3    3    4    5    7    8   10   14   17   19   26   31   35   40   43   46   47   52   54 
LCS_GDT     E      37     E      37      3    5   15     3    4    4    4    5    7    7    8   10   15   16   22   24   25   31   33   42   46   50   54 
LCS_GDT     G      38     G      38      3    5   15     3    3    4    4    5    7    7    8    9   12   12   17   18   25   30   31   36   39   42   47 
LCS_GDT     N      39     N      39      3    5   15     3    4    4    4    5    5    6    7   10   12   13   14   17   22   25   29   31   38   41   47 
LCS_GDT     R      40     R      40      3    5   15     3    4    4    5    6    6    6    7   10   11   14   20   20   23   26   30   35   41   43   48 
LCS_GDT     L      41     L      41      3    5   15     1    4    4    5    6    6    7   10   12   16   19   22   26   29   34   38   42   45   48   54 
LCS_GDT     H      42     H      42      3    3   39     0    3    4    5    6    6    8   13   14   17   19   23   26   29   31   37   42   45   50   54 
LCS_GDT     Y      43     Y      43      3    7   40     1    3    3    4    4    8   11   13   19   22   27   33   35   36   40   43   46   48   52   54 
LCS_GDT     L      44     L      44      5    7   40     4    4    5    5    6    7    7   13   21   27   30   35   35   37   40   42   46   48   52   54 
LCS_GDT     A      45     A      45      5    7   40     4    4    5    5    6    8   11   13   16   19   29   35   35   37   40   43   46   48   52   54 
LCS_GDT     D      46     D      46      5    7   41     4    4    5    5    6    8   11   13   16   19   27   33   35   37   40   43   46   48   52   54 
LCS_GDT     R      47     R      47      5    7   41     4    4    5    5    9    9   11   16   21   26   29   33   35   37   40   43   46   48   52   54 
LCS_GDT     A      48     A      48      5    8   41     3    4    5    5    9   15   17   22   25   28   30   35   35   37   40   43   46   48   52   54 
LCS_GDT     G      49     G      49      4    8   41     3    4    6   10   15   20   23   25   29   31   32   35   36   37   41   43   46   48   52   54 
LCS_GDT     I      50     I      50      4    8   41     3    5    7   11   17   21   23   26   29   31   32   35   37   40   41   43   46   48   52   54 
LCS_GDT     R      51     R      51      4    8   41     3    4    6    7    7   13   15   17   26   29   32   35   35   37   41   43   46   48   52   54 
LCS_GDT     G      52     G      52      4    8   41     4    4    5    7    7   13   15   20   27   31   32   35   36   40   41   43   46   48   52   54 
LCS_GDT     L      53     L      53      4   15   41     4    4    6    8   16   20   23   25   28   33   34   35   37   40   41   43   46   48   52   54 
LCS_GDT     F      54     F      54      4   19   41     4    9   12   16   20   24   26   28   31   33   35   36   37   40   43   44   45   48   52   54 
LCS_GDT     S      55     S      55      4   19   41     4    4    6    7    9   13   13   26   31   31   35   36   37   40   43   44   45   47   48   50 
LCS_GDT     D      56     D      56     13   23   41     9   11   12   16   19   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     A      57     A      57     13   23   41     9   11   12   16   18   22   24   26   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     D      58     D      58     13   23   41     9   11   12   16   18   22   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     A      59     A      59     13   23   41     9   11   12   16   20   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     Y      60     Y      60     13   23   41     9   11   12   16   20   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     H      61     H      61     13   23   41     9   11   12   18   20   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     L      62     L      62     13   23   41     9   11   13   18   20   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     D      63     D      63     16   23   41     9   11   15   18   20   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     Q      64     Q      64     16   23   41     9   11   12   18   20   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     A      65     A      65     16   23   41    14   14   15   18   20   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     F      66     F      66     16   23   41    14   14   15   18   20   22   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     P      67     P      67     16   23   41    14   14   15   18   20   22   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     L      68     L      68     16   23   41    14   14   15   18   20   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     L      69     L      69     16   23   41    14   14   15   18   20   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     M      70     M      70     16   23   41    14   14   15   18   20   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     K      71     K      71     16   23   41    14   14   15   18   20   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     Q      72     Q      72     16   23   41    14   14   15   18   20   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     L      73     L      73     16   23   41    14   14   15   18   20   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     E      74     E      74     16   23   41    14   14   15   18   20   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     L      75     L      75     16   23   41    14   14   15   18   20   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     M      76     M      76     16   23   41    14   14   15   18   20   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     L      77     L      77     16   23   41    14   14   15   18   20   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     T      78     T      78     16   23   41    14   14   15   18   20   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     S      79     S      79     15   22   41     3    7   14   15   19   21   26   28   30   33   34   36   37   40   43   44   46   48   52   54 
LCS_GDT     G      80     G      80      3   20   41     3    4    4    6    8   13   21   26   29   31   32   35   37   40   43   44   45   48   52   53 
LCS_GDT     E      81     E      81      3   18   41     3    3    4    6   15   20   21   26   29   31   32   35   37   40   43   44   45   48   52   53 
LCS_GDT     L      82     L      82      3    7   41     3    3    4    6    8   10   15   18   23   27   31   34   37   39   43   44   45   48   52   53 
LCS_GDT     N      83     N      83      3    7   41     3    3    5    5    6    8   15   18   23   26   31   32   34   37   41   43   45   46   47   50 
LCS_GDT     P      84     P      84      4    7   41     3    4    5    6    7    9   11   12   18   20   24   26   30   33   36   36   38   42   44   45 
LCS_GDT     R      85     R      85      4    7   41     3    4    5    6   11   16   21   26   29   31   32   33   34   37   38   41   42   43   45   48 
LCS_GDT     H      86     H      86      4    8   41     4    4    5    6    8    9   15   26   29   31   32   35   36   37   39   42   43   48   52   53 
LCS_GDT     Q      87     Q      87      4    8   41     4    4    5    6    8    9   11   20   23   27   32   34   37   39   41   43   45   48   52   53 
LCS_GDT     H      88     H      88      4    8   41     4    4    5    6    8   17   22   25   29   33   34   35   37   40   43   44   46   48   52   54 
LCS_GDT     T      89     T      89      4    8   41     4    4    7    8   12   18   25   28   29   33   34   35   37   40   43   44   46   47   52   54 
LCS_GDT     V      90     V      90      4    8   23     3    3    4    6    8    9   16   24   29   31   35   36   37   40   43   44   45   47   50   54 
LCS_GDT     T      91     T      91      4    8   23     3    3    5    6    8    9   11   16   17   20   23   30   33   35   38   42   42   46   49   54 
LCS_GDT     L      92     L      92      4    8   23     3    3    4    6    8    9   11   16   17   20   23   26   28   30   34   42   42   45   49   54 
LCS_GDT     Y      93     Y      93      3    8   23     3    3    4    6    8    9   11   13   15   19   19   21   24   28   31   32   34   39   42   46 
LCS_GDT     A      94     A      94      5    7   23     3    4    5    6    8    9   11   13   15   18   19   22   26   28   31   32   38   41   43   46 
LCS_GDT     K      95     K      95      5    7   23     3    4    5    6    8    9   10   13   15   18   19   20   24   28   31   32   34   39   42   46 
LCS_GDT     G      96     G      96      5    7   23     3    3    5    6    8    9   10   16   17   20   23   24   28   30   33   38   40   43   46   49 
LCS_GDT     L      97     L      97      5    7   22     3    3    4    6    8    9   12   16   23   27   28   31   34   38   40   44   45   47   49   54 
LCS_GDT     T      98     T      98      5    7   20     3    4    5    6    9   11   18   22   29   31   35   36   37   40   43   44   45   47   50   54 
LCS_GDT     C      99     C      99      3    6   20     0    3    4    5    9   14   18   22   29   31   35   36   37   40   43   44   45   47   50   54 
LCS_GDT     K     100     K     100      3    5   20     3    3    4    5    7    9   16   19   22   29   32   34   37   38   40   43   45   47   49   54 
LCS_GDT     A     101     A     101      3    5   20     3    3    4    5    9    9   11   13   14   18   19   24   27   31   38   42   42   46   50   54 
LCS_GDT     D     102     D     102      3    5   20     3    3    4    5    9    9   10   13   14   18   19   24   27   31   37   41   42   46   49   54 
LCS_GDT     T     103     T     103      3    6   20     3    3    4    5    9    9   10   13   14   18   19   21   22   26   31   36   39   46   49   54 
LCS_GDT     L     104     L     104      3    6   20     3    3    4    5    6    7   10   12   14   16   18   23   25   29   37   41   42   46   49   54 
LCS_GDT     S     105     S     105      3    6   20     3    3    4    5    6    9   10   12   14   16   18   23   25   29   33   36   39   44   49   54 
LCS_GDT     S     106     S     106      3    6   20     3    3    4    5    6    9   10   12   14   16   18   23   25   30   37   41   42   46   49   54 
LCS_GDT     C     107     C     107      3    6   20     3    3    4    5    6    8    9   11   14   17   19   23   26   30   37   41   44   46   50   54 
LCS_GDT     D     108     D     108      3    6   20     1    3    4    5    5    8   16   21   25   28   31   33   36   40   41   43   46   48   52   54 
LCS_GDT     Y     109     Y     109      6    7   20     1    3   11   16   20   24   26   28   31   33   35   36   37   40   43   44   46   47   52   54 
LCS_GDT     V     110     V     110      6    7   20     3    4   11   16   20   24   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     Y     111     Y     111      6    7   20     4    5    6    7   11   21   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     L     112     L     112      6    7   20     4    5    6    9   15   22   26   28   31   33   35   36   37   40   43   44   46   48   52   54 
LCS_GDT     A     113     A     113      6    7   20     4    5    6    7    8    9   11   17   25   29   32   34   37   40   43   44   46   48   52   54 
LCS_GDT     V     114     V     114      6    7   20     4    5    6    7    8    9   10   14   21   26   31   33   35   39   43   44   45   47   51   54 
LCS_GDT     Y     115     Y     115      5    7   20     2    5    5    7    7    9   10   12   14   17   19   23   27   30   36   38   41   45   49   54 
LCS_GDT     P     116     P     116      3    7   20     0    3    3    4    6    9    9   10   14   19   23   24   27   30   35   38   41   45   49   54 
LCS_GDT     T     117     T     117      3    7   20     0    3    3    6    6    8   12   13   16   21   23   27   29   32   35   39   41   45   49   54 
LCS_AVERAGE  LCS_A:  15.20  (   6.54   10.86   28.19 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     14     15     18     20     24     26     28     31     33     35     36     37     40     43     44     46     48     52     54 
GDT PERCENT_CA  13.86  13.86  14.85  17.82  19.80  23.76  25.74  27.72  30.69  32.67  34.65  35.64  36.63  39.60  42.57  43.56  45.54  47.52  51.49  53.47
GDT RMS_LOCAL    0.17   0.17   0.68   1.22   1.52   2.01   2.21   2.36   2.64   3.12   3.20   3.35   3.48   4.05   4.50   4.68   5.81   5.82   6.18   6.72
GDT RMS_ALL_CA  14.19  14.19  13.98  14.41  14.31  14.25  14.03  14.19  14.37  13.86  14.58  14.45  14.32  14.00  13.81  13.82  14.63  15.26  14.81  14.12

#      Molecule1      Molecule2       DISTANCE
LGA    R      17      R      17         34.104
LGA    P      18      P      18         30.275
LGA    W      19      W      19         26.512
LGA    W      20      W      20         24.715
LGA    G      21      G      21         25.465
LGA    L      22      L      22         19.922
LGA    P      23      P      23         20.322
LGA    C      24      C      24         20.531
LGA    T      25      T      25         24.818
LGA    V      26      V      26         23.311
LGA    T      27      T      27         27.780
LGA    P      28      P      28         26.566
LGA    C      29      C      29         20.066
LGA    F      30      F      30         16.872
LGA    G      31      G      31         13.045
LGA    A      32      A      32          7.404
LGA    R      33      R      33          2.802
LGA    L      34      L      34          2.858
LGA    V      35      V      35          8.424
LGA    Q      36      Q      36         11.760
LGA    E      37      E      37         15.215
LGA    G      38      G      38         19.596
LGA    N      39      N      39         21.072
LGA    R      40      R      40         19.478
LGA    L      41      L      41         16.059
LGA    H      42      H      42         17.334
LGA    Y      43      Y      43         16.260
LGA    L      44      L      44         18.123
LGA    A      45      A      45         17.170
LGA    D      46      D      46         18.618
LGA    R      47      R      47         19.113
LGA    A      48      A      48         17.559
LGA    G      49      G      49         16.912
LGA    I      50      I      50         13.241
LGA    R      51      R      51         14.493
LGA    G      52      G      52         11.808
LGA    L      53      L      53          7.341
LGA    F      54      F      54          1.519
LGA    S      55      S      55          5.381
LGA    D      56      D      56          2.842
LGA    A      57      A      57          5.076
LGA    D      58      D      58          3.912
LGA    A      59      A      59          0.996
LGA    Y      60      Y      60          2.120
LGA    H      61      H      61          1.836
LGA    L      62      L      62          2.009
LGA    D      63      D      63          2.838
LGA    Q      64      Q      64          2.506
LGA    A      65      A      65          1.701
LGA    F      66      F      66          3.834
LGA    P      67      P      67          3.803
LGA    L      68      L      68          1.523
LGA    L      69      L      69          1.782
LGA    M      70      M      70          2.791
LGA    K      71      K      71          1.864
LGA    Q      72      Q      72          0.728
LGA    L      73      L      73          1.386
LGA    E      74      E      74          1.010
LGA    L      75      L      75          1.862
LGA    M      76      M      76          2.204
LGA    L      77      L      77          0.867
LGA    T      78      T      78          1.705
LGA    S      79      S      79          6.508
LGA    G      80      G      80         10.003
LGA    E      81      E      81         10.767
LGA    L      82      L      82         10.801
LGA    N      83      N      83         14.069
LGA    P      84      P      84         19.805
LGA    R      85      R      85         20.078
LGA    H      86      H      86         16.606
LGA    Q      87      Q      87         14.596
LGA    H      88      H      88          8.881
LGA    T      89      T      89          7.022
LGA    V      90      V      90          6.476
LGA    T      91      T      91         12.004
LGA    L      92      L      92         12.219
LGA    Y      93      Y      93         18.103
LGA    A      94      A      94         18.002
LGA    K      95      K      95         22.233
LGA    G      96      G      96         16.946
LGA    L      97      L      97         10.380
LGA    T      98      T      98          6.683
LGA    C      99      C      99          6.785
LGA    K     100      K     100          8.295
LGA    A     101      A     101          8.823
LGA    D     102      D     102         10.147
LGA    T     103      T     103         14.574
LGA    L     104      L     104         13.937
LGA    S     105      S     105         17.502
LGA    S     106      S     106         14.716
LGA    C     107      C     107         13.975
LGA    D     108      D     108          8.012
LGA    Y     109      Y     109          2.536
LGA    V     110      V     110          1.760
LGA    Y     111      Y     111          4.054
LGA    L     112      L     112          3.834
LGA    A     113      A     113          8.816
LGA    V     114      V     114         10.079
LGA    Y     115      Y     115         14.578
LGA    P     116      P     116         16.156
LGA    T     117      T     117         16.107

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  101  101    4.0     28    2.36    25.743    22.496     1.137

LGA_LOCAL      RMSD =  2.363  Number of atoms =   28  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 14.189  Number of atoms =  101 
Std_ALL_ATOMS  RMSD = 12.985  (standard rmsd on all 101 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.233318 * X  +  -0.285264 * Y  +   0.929617 * Z  +  44.478058
  Y_new =  -0.809959 * X  +   0.471993 * Y  +   0.348123 * Z  +  30.373600
  Z_new =  -0.538079 * X  +  -0.834175 * Y  +  -0.120928 * Z  +  44.492050 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.714760    1.426832  [ DEG:   -98.2485     81.7515 ]
  Theta =   0.568157    2.573436  [ DEG:    32.5530    147.4470 ]
  Phi   =  -1.290327    1.851265  [ DEG:   -73.9303    106.0697 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0304TS393_1-D1                               
REMARK     2: T0304_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0304TS393_1-D1.T0304_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  101  101   4.0   28   2.36  22.496    12.98
REMARK  ---------------------------------------------------------- 
MOLECULE T0304TS393_1-D1
PFRMAT TS
TARGET T0304
MODEL 1
PARENT N/A
ATOM     17  CA  ARG    17      29.829  47.625  55.866  1.00 25.00           C
ATOM     18  CA  PRO    18      33.125  48.327  54.148  1.00 25.00           C
ATOM     19  CA  TRP    19      36.151  46.198  55.059  1.00 25.00           C
ATOM     20  CA  TRP    20      39.746  46.269  53.748  1.00 25.00           C
ATOM     21  CA  GLY    21      42.860  47.717  55.372  1.00 25.00           C
ATOM     22  CA  LEU    22      45.188  45.072  53.843  1.00 25.00           C
ATOM     23  CA  PRO    23      45.769  42.064  56.121  1.00 25.00           C
ATOM     24  CA  CYS    24      46.446  39.047  53.911  1.00 25.00           C
ATOM     25  CA  THR    25      45.924  36.323  56.446  1.00 25.00           C
ATOM     26  CA  VAL    26      45.417  33.759  53.734  1.00 25.00           C
ATOM     27  CA  THR    27      48.103  31.814  55.600  1.00 25.00           C
ATOM     28  CA  PRO    28      49.246  28.231  55.022  1.00 25.00           C
ATOM     29  CA  CYS    29      49.904  26.195  51.935  1.00 25.00           C
ATOM     30  CA  PHE    30      50.054  22.370  52.304  1.00 25.00           C
ATOM     31  CA  GLY    31      49.806  19.119  50.294  1.00 25.00           C
ATOM     32  CA  ALA    32      45.985  19.236  50.527  1.00 25.00           C
ATOM     33  CA  ARG    33      45.999  22.874  49.330  1.00 25.00           C
ATOM     34  CA  LEU    34      48.254  21.921  46.385  1.00 25.00           C
ATOM     35  CA  VAL    35      45.897  19.042  45.479  1.00 25.00           C
ATOM     36  CA  GLN    36      42.899  21.422  45.611  1.00 25.00           C
ATOM     37  CA  GLU    37      44.737  23.902  43.344  1.00 25.00           C
ATOM     38  CA  GLY    38      45.536  21.089  40.872  1.00 25.00           C
ATOM     39  CA  ASN    39      41.860  20.014  40.870  1.00 25.00           C
ATOM     40  CA  ARG    40      40.778  23.628  40.216  1.00 25.00           C
ATOM     41  CA  LEU    41      43.269  23.876  37.317  1.00 25.00           C
ATOM     42  CA  HIS    42      41.926  20.603  35.851  1.00 25.00           C
ATOM     43  CA  TYR    43      38.341  21.921  36.132  1.00 25.00           C
ATOM     44  CA  LEU    44      39.369  25.163  34.373  1.00 25.00           C
ATOM     45  CA  ALA    45      41.036  23.148  31.577  1.00 25.00           C
ATOM     46  CA  ASP    46      37.869  21.033  31.179  1.00 25.00           C
ATOM     47  CA  ARG    47      35.741  24.210  30.987  1.00 25.00           C
ATOM     48  CA  ALA    48      37.068  27.716  30.200  1.00 25.00           C
ATOM     49  CA  GLY    49      40.426  28.450  28.470  1.00 25.00           C
ATOM     50  CA  ILE    50      43.408  26.150  28.193  1.00 25.00           C
ATOM     51  CA  ARG    51      46.348  23.833  27.251  1.00 25.00           C
ATOM     52  CA  GLY    52      43.693  21.772  25.403  1.00 25.00           C
ATOM     53  CA  LEU    53      42.568  18.200  25.562  1.00 25.00           C
ATOM     54  CA  PHE    54      41.127  16.612  28.756  1.00 25.00           C
ATOM     55  CA  SER    55      42.315  13.112  29.651  1.00 25.00           C
ATOM     56  CA  ASP    56      45.413  12.132  27.672  1.00 25.00           C
ATOM     57  CA  ALA    57      49.150  12.816  27.184  1.00 25.00           C
ATOM     58  CA  ASP    58      48.415  16.522  26.561  1.00 25.00           C
ATOM     59  CA  ALA    59      46.284  16.660  29.740  1.00 25.00           C
ATOM     60  CA  TYR    60      49.109  15.015  31.734  1.00 25.00           C
ATOM     61  CA  HIS    61      51.609  17.557  30.337  1.00 25.00           C
ATOM     62  CA  LEU    62      49.266  20.429  31.303  1.00 25.00           C
ATOM     63  CA  ASP    63      48.930  18.998  34.840  1.00 25.00           C
ATOM     64  CA  GLN    64      52.740  18.732  35.121  1.00 25.00           C
ATOM     65  CA  ALA    65      53.103  22.365  33.962  1.00 25.00           C
ATOM     66  CA  PHE    66      50.517  23.477  36.558  1.00 25.00           C
ATOM     67  CA  PRO    67      52.403  21.568  39.291  1.00 25.00           C
ATOM     68  CA  LEU    68      55.684  23.228  38.221  1.00 25.00           C
ATOM     69  CA  LEU    69      54.010  26.670  38.335  1.00 25.00           C
ATOM     70  CA  MET    70      52.660  25.924  41.840  1.00 25.00           C
ATOM     71  CA  LYS    71      56.153  24.850  42.983  1.00 25.00           C
ATOM     72  CA  GLN    72      57.640  28.078  41.556  1.00 25.00           C
ATOM     73  CA  LEU    73      54.980  30.140  43.383  1.00 25.00           C
ATOM     74  CA  GLU    74      55.768  28.305  46.651  1.00 25.00           C
ATOM     75  CA  LEU    75      59.505  28.989  46.163  1.00 25.00           C
ATOM     76  CA  MET    76      58.769  32.695  45.540  1.00 25.00           C
ATOM     77  CA  LEU    77      56.638  32.833  48.719  1.00 25.00           C
ATOM     78  CA  THR    78      59.464  31.188  50.713  1.00 25.00           C
ATOM     79  CA  SER    79      62.929  30.353  49.562  1.00 25.00           C
ATOM     80  CA  GLY    80      64.715  31.883  46.596  1.00 25.00           C
ATOM     81  CA  GLU    81      65.097  35.455  47.927  1.00 25.00           C
ATOM     82  CA  LEU    82      62.485  38.160  48.610  1.00 25.00           C
ATOM     83  CA  ASN    83      64.050  41.585  49.461  1.00 25.00           C
ATOM     84  CA  PRO    84      65.273  42.622  46.001  1.00 25.00           C
ATOM     85  CA  ARG    85      62.615  42.858  43.288  1.00 25.00           C
ATOM     86  CA  HIS    86      60.792  39.545  43.403  1.00 25.00           C
ATOM     87  CA  GLN    87      58.078  40.629  45.861  1.00 25.00           C
ATOM     88  CA  HIS    88      54.882  38.770  45.030  1.00 25.00           C
ATOM     89  CA  THR    89      51.702  37.139  46.381  1.00 25.00           C
ATOM     90  CA  VAL    90      48.040  36.253  47.185  1.00 25.00           C
ATOM     91  CA  THR    91      47.541  32.991  49.144  1.00 25.00           C
ATOM     92  CA  LEU    92      45.132  32.242  46.284  1.00 25.00           C
ATOM     93  CA  TYR    93      41.413  32.022  47.224  1.00 25.00           C
ATOM     94  CA  ALA    94      40.783  32.123  43.474  1.00 25.00           C
ATOM     95  CA  LYS    95      37.830  33.969  41.926  1.00 25.00           C
ATOM     96  CA  GLY    96      39.630  33.814  38.610  1.00 25.00           C
ATOM     97  CA  LEU    97      42.453  31.557  37.563  1.00 25.00           C
ATOM     98  CA  THR    98      45.547  30.006  39.105  1.00 25.00           C
ATOM     99  CA  CYS    99      43.471  28.541  41.891  1.00 25.00           C
ATOM    100  CA  LYS   100      41.984  27.168  45.159  1.00 25.00           C
ATOM    101  CA  ALA   101      38.548  27.560  43.494  1.00 25.00           C
ATOM    102  CA  ASP   102      36.101  29.763  45.401  1.00 25.00           C
ATOM    103  CA  THR   103      33.212  27.329  44.758  1.00 25.00           C
ATOM    104  CA  LEU   104      34.876  23.929  44.324  1.00 25.00           C
ATOM    105  CA  SER   105      34.134  22.190  47.594  1.00 25.00           C
ATOM    106  CA  SER   106      37.615  20.542  47.458  1.00 25.00           C
ATOM    107  CA  CYS   107      38.787  24.123  47.932  1.00 25.00           C
ATOM    108  CA  ASP   108      41.228  25.943  50.219  1.00 25.00           C
ATOM    109  CA  TYR   109      44.218  26.258  52.632  1.00 25.00           C
ATOM    110  CA  VAL   110      45.799  27.867  49.561  1.00 25.00           C
ATOM    111  CA  TYR   111      48.022  26.972  46.629  1.00 25.00           C
ATOM    112  CA  LEU   112      48.117  28.753  43.285  1.00 25.00           C
ATOM    113  CA  ALA   113      50.235  31.213  41.325  1.00 25.00           C
ATOM    114  CA  VAL   114      49.352  33.932  38.850  1.00 25.00           C
ATOM    115  CA  TYR   115      50.193  37.257  37.181  1.00 25.00           C
ATOM    116  CA  PRO   116      46.764  38.645  37.942  1.00 25.00           C
ATOM    117  CA  THR   117      44.590  41.826  37.916  1.00 25.00           C
TER
END
