
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  101 (  101),  selected  101 , name T0304TS168_4-D1
# Molecule2: number of CA atoms  101 (  799),  selected  101 , name T0304_D1.pdb
# PARAMETERS: T0304TS168_4-D1.T0304_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    45        43 - 87          4.93    17.06
  LONGEST_CONTINUOUS_SEGMENT:    45        44 - 88          4.95    16.82
  LCS_AVERAGE:     30.15

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    23        54 - 76          1.96    14.88
  LONGEST_CONTINUOUS_SEGMENT:    23        56 - 78          1.99    14.65
  LONGEST_CONTINUOUS_SEGMENT:    23        57 - 79          1.91    14.64
  LCS_AVERAGE:     11.11

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    17        63 - 79          0.87    14.01
  LCS_AVERAGE:      7.09

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  101
LCS_GDT     R      17     R      17      4    8   12     0    4    6    6    8   11   13   16   19   21   22   24   26   27   30   31   31   31   32   33 
LCS_GDT     P      18     P      18      4    8   12     3    4    6    6    8   11   13   16   19   21   22   24   26   28   30   31   31   31   34   35 
LCS_GDT     W      19     W      19      4    8   12     3    4    6    7    9   11   13   16   19   21   22   24   26   28   30   32   33   33   34   35 
LCS_GDT     W      20     W      20      4    8   12     3    4    4    5    6   11   12   16   19   21   22   24   26   28   30   32   33   33   34   36 
LCS_GDT     G      21     G      21      4    8   12     3    4    6    6    7    8    9   10   17   21   22   23   26   28   29   32   33   33   34   36 
LCS_GDT     L      22     L      22      3    8   12     3    4    6    6    7    8    8    9   10   10   15   23   24   27   29   32   33   35   36   39 
LCS_GDT     P      23     P      23      4    8   12     3    4    6    6   10   10   11   12   14   17   19   23   24   28   30   34   35   37   42   43 
LCS_GDT     C      24     C      24      4    8   12     3    3    4    5    7    9   11   12   13   15   17   23   24   27   30   32   35   37   42   43 
LCS_GDT     T      25     T      25      4    6   12     3    3    4    6    7    8    9   10   13   14   16   19   22   24   29   31   34   37   42   43 
LCS_GDT     V      26     V      26      4    6   12     3    3    4    6    7    8    9   10   13   14   16   19   22   24   29   31   33   37   42   43 
LCS_GDT     T      27     T      27      4    6   12     3    4    4    6    7    8    9   10   13   14   15   19   22   23   26   28   33   37   40   42 
LCS_GDT     P      28     P      28      4    6   12     3    4    4    6    7    8    9   10   13   14   15   19   22   24   29   31   33   37   40   42 
LCS_GDT     C      29     C      29      4    6   12     3    4    4    5    7    8    9   10   13   14   15   19   22   24   29   31   33   37   40   42 
LCS_GDT     F      30     F      30      4    6   12     3    4    4    5    6    8    9   10   13   14   15   19   22   24   29   31   33   37   42   43 
LCS_GDT     G      31     G      31      4    5   12     3    3    4    4    5    8    9   10   11   12   14   17   22   31   34   35   38   39   43   45 
LCS_GDT     A      32     A      32      3    3   12     3    4    4    5    6   11   16   20   22   25   28   31   34   38   41   41   41   43   44   46 
LCS_GDT     R      33     R      33      3    3   12     3    3    3    4   11   15   22   25   27   29   33   36   38   39   41   44   47   49   52   55 
LCS_GDT     L      34     L      34      3    3   12     3    3    3    9   12   20   23   29   32   32   33   36   39   41   45   47   49   52   54   55 
LCS_GDT     V      35     V      35      3    3   12     3    4    4    4    8   16   21   24   29   31   33   36   39   42   45   47   49   52   54   55 
LCS_GDT     Q      36     Q      36      3    4   15     3    4    4    5    5    7   15   19   25   30   32   36   39   42   45   47   49   52   54   55 
LCS_GDT     E      37     E      37      3    5   15     3    4    4    5    5    6    7    7   11   17   20   24   29   31   37   45   49   52   54   55 
LCS_GDT     G      38     G      38      3    5   15     3    3    4    5    5    6    7   10   12   12   14   21   22   30   37   37   41   42   46   52 
LCS_GDT     N      39     N      39      3    5   15     3    4    4    4    5    5    5    6   12   12   14   15   22   29   33   36   40   45   47   53 
LCS_GDT     R      40     R      40      3    5   15     3    4    4    4    5    5    7   10   12   13   19   21   22   29   33   36   40   50   52   55 
LCS_GDT     L      41     L      41      3    5   42     0    4    4    4    6    8    9   12   16   19   23   27   29   34   37   45   49   52   54   55 
LCS_GDT     H      42     H      42      3    3   42     0    3    3    5    6    8   15   21   22   25   28   29   31   38   43   46   49   52   54   55 
LCS_GDT     Y      43     Y      43      3    3   45     1    3    4    5    7    9   12   16   22   29   30   34   38   42   45   47   49   52   54   55 
LCS_GDT     L      44     L      44      4    6   45     4    4    4    5    5    7   11   16   22   25   28   34   38   41   44   47   49   52   54   55 
LCS_GDT     A      45     A      45      4    6   45     4    4    4    5    6   11   18   21   22   25   28   33   38   42   45   47   49   52   54   55 
LCS_GDT     D      46     D      46      4    6   45     4    4    4    5    6   10   18   21   22   25   28   33   36   42   45   47   49   52   54   55 
LCS_GDT     R      47     R      47      4    6   45     4    4    4    5    6   11   18   21   22   25   30   33   36   41   44   47   49   52   54   55 
LCS_GDT     A      48     A      48      4    6   45     3    4    5    7   12   17   24   26   29   32   35   36   39   42   45   47   49   52   54   55 
LCS_GDT     G      49     G      49      4    7   45     3    4    5   11   16   22   26   28   30   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     I      50     I      50      6    7   45     3    4    7   11   18   22   26   28   31   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     R      51     R      51      6    7   45     3    5    6    7    8   10   12   19   22   25   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     G      52     G      52      6    7   45     3    5    6    7    8   10   15   28   30   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     L      53     L      53      6   18   45     3    5    6    7   18   22   26   28   31   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     F      54     F      54     13   23   45     3   10   13   16   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     S      55     S      55     13   23   45     3    5   12   16   19   23   28   29   32   32   34   37   39   40   44   46   49   50   54   55 
LCS_GDT     D      56     D      56     13   23   45     9   11   13   16   19   24   28   29   32   34   36   37   39   41   45   47   49   52   54   55 
LCS_GDT     A      57     A      57     13   23   45     9   11   13   16   19   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     D      58     D      58     13   23   45     9   11   13   16   19   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     A      59     A      59     13   23   45     9   11   13   19   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     Y      60     Y      60     13   23   45     9   11   13   16   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     H      61     H      61     13   23   45     9   11   13   19   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     L      62     L      62     13   23   45     9   11   15   19   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     D      63     D      63     17   23   45     9   12   16   19   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     Q      64     Q      64     17   23   45     9   11   13   19   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     A      65     A      65     17   23   45    14   15   16   19   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     F      66     F      66     17   23   45    14   15   16   19   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     P      67     P      67     17   23   45    14   15   16   19   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     L      68     L      68     17   23   45    14   15   16   19   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     L      69     L      69     17   23   45    14   15   16   19   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     M      70     M      70     17   23   45    14   15   16   19   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     K      71     K      71     17   23   45    14   15   16   19   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     Q      72     Q      72     17   23   45    14   15   16   19   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     L      73     L      73     17   23   45    14   15   16   19   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     E      74     E      74     17   23   45    14   15   16   19   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     L      75     L      75     17   23   45    14   15   16   19   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     M      76     M      76     17   23   45    14   15   16   19   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     L      77     L      77     17   23   45    14   15   16   19   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     T      78     T      78     17   23   45    14   15   16   19   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     S      79     S      79     17   23   45     4   15   16   19   22   24   28   29   32   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     G      80     G      80      3   21   45     3    3    3    7   14   21   26   28   31   34   36   37   39   41   45   47   49   52   54   55 
LCS_GDT     E      81     E      81      4   21   45     3    5    7   14   19   22   26   28   31   34   36   37   39   42   45   47   49   52   54   55 
LCS_GDT     L      82     L      82      6   19   45     3    4    7    7    8   12   18   23   27   32   36   37   39   41   44   47   49   51   54   55 
LCS_GDT     N      83     N      83      6    8   45     4    5    7    7    8   14   21   27   31   34   36   37   39   39   42   43   45   50   54   54 
LCS_GDT     P      84     P      84      6    8   45     4    5    7    7    8   11   13   21   24   26   29   34   37   39   40   41   43   45   46   49 
LCS_GDT     R      85     R      85      6    9   45     4    5    7    7   13   21   26   28   31   34   36   37   39   39   42   43   45   50   54   54 
LCS_GDT     H      86     H      86      6    9   45     4    5    7    8   10   21   26   28   31   34   36   37   39   41   44   47   49   52   54   55 
LCS_GDT     Q      87     Q      87      7    9   45     3    6    7    8   10   10   19   22   28   32   33   36   39   42   45   47   49   52   54   55 
LCS_GDT     H      88     H      88      7    9   45     3    6    8   14   21   22   26   29   32   32   33   36   39   42   45   47   49   52   54   55 
LCS_GDT     T      89     T      89      7    9   43     3    7   11   18   19   22   25   29   32   32   33   36   38   42   45   47   49   52   54   55 
LCS_GDT     V      90     V      90      7    9   43     3    5    7    8   10   18   24   26   29   31   32   34   36   38   41   44   47   49   52   55 
LCS_GDT     T      91     T      91      7    9   24     3    6    7    8   10   11   13   17   22   24   28   28   31   34   36   39   42   47   51   53 
LCS_GDT     L      92     L      92      7    9   24     3    6    7    8   10   11   13   16   19   21   22   24   26   29   33   38   41   46   48   53 
LCS_GDT     Y      93     Y      93      7    9   24     3    6    7    8   10   11   13   16   19   21   22   24   26   28   30   32   33   35   39   42 
LCS_GDT     A      94     A      94      3    6   24     3    3    3    4    5    7   10   15   19   21   22   24   26   28   30   32   33   35   39   41 
LCS_GDT     K      95     K      95      4    6   24     3    3    4    4    5    7    7    8   10   12   17   24   26   28   30   32   33   33   39   39 
LCS_GDT     G      96     G      96      4    6   24     3    3    4    4    5    7    9    9   10   17   22   24   26   28   30   32   34   37   42   43 
LCS_GDT     L      97     L      97      4    6   24     3    3    4    4    5    7    9   11   14   18   21   24   27   32   34   38   41   44   47   53 
LCS_GDT     T      98     T      98      4    6   24     3    3    4    7   10   15   18   21   26   27   30   33   35   38   41   41   42   47   51   53 
LCS_GDT     C      99     C      99      3    6   17     3    3    4    4    5    6    7    7   15   16   21   25   30   32   37   40   42   46   51   53 
LCS_GDT     K     100     K     100      3    5   18     0    3    4    4    5    9   13   14   15   16   17   17   21   24   28   31   39   44   47   52 
LCS_GDT     A     101     A     101      3    5   18     0    3    4    4    5    9   13   14   15   16   19   22   26   31   36   40   42   47   51   53 
LCS_GDT     D     102     D     102      4    5   18     0    3    4    6    7    9   13   14   15   17   19   23   28   34   36   42   46   47   51   53 
LCS_GDT     T     103     T     103      4    5   18     3    3    4    5    5    9   13   14   15   17   28   28   29   34   37   42   46   48   51   53 
LCS_GDT     L     104     L     104      4    6   18     3    4    4    5    7   11   18   21   22   24   28   28   31   34   36   42   46   48   51   53 
LCS_GDT     S     105     S     105      4    6   18     3    4    4    7    8    9   15   17   22   24   28   28   31   34   36   38   42   47   51   53 
LCS_GDT     S     106     S     106      4    6   18     3    4    4    7    8   10   18   21   22   24   28   28   31   34   36   42   45   47   51   53 
LCS_GDT     C     107     C     107      4    7   18     3    3    4    5    7    9   10   11   13   16   28   28   29   34   36   37   39   44   47   52 
LCS_GDT     D     108     D     108      4    7   18     3    3    4    5    7   10   18   21   22   24   28   29   31   34   39   44   46   48   51   53 
LCS_GDT     Y     109     Y     109      4    7   18     1    3    4    6   10   12   18   21   25   29   32   34   36   38   41   46   48   51   54   55 
LCS_GDT     V     110     V     110      3    7   18     3    4    5    7   10   12   18   21   25   29   32   34   36   38   41   46   49   52   54   55 
LCS_GDT     Y     111     Y     111      3    7   18     3    3    6   14   21   24   28   29   32   32   33   36   39   42   45   47   49   52   54   55 
LCS_GDT     L     112     L     112      3    7   18     3   13   16   19   21   24   28   29   32   32   33   36   39   42   45   47   49   52   54   55 
LCS_GDT     A     113     A     113      3    7   18     2    3    4    5    7   18   23   29   32   32   33   36   39   42   45   47   49   52   54   55 
LCS_GDT     V     114     V     114      4    7   18     3    4    4    7    8   12   19   23   27   29   32   36   38   39   41   43   48   50   52   55 
LCS_GDT     Y     115     Y     115      4    7   18     3    4    4    7    8   11   18   21   22   24   28   29   31   34   36   39   42   46   49   54 
LCS_GDT     P     116     P     116      4    6   18     3    4    4    5    6    7   10   14   21   21   22   25   27   34   36   39   41   44   47   53 
LCS_GDT     T     117     T     117      4    6   18     3    4    4    5    7    9   13   15   18   21   23   25   31   32   36   39   41   46   51   53 
LCS_AVERAGE  LCS_A:  16.12  (   7.09   11.11   30.15 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     14     15     16     19     22     24     28     29     32     34     36     37     39     42     45     47     49     52     54     55 
GDT PERCENT_CA  13.86  14.85  15.84  18.81  21.78  23.76  27.72  28.71  31.68  33.66  35.64  36.63  38.61  41.58  44.55  46.53  48.51  51.49  53.47  54.46
GDT RMS_LOCAL    0.17   0.32   0.65   1.10   1.64   1.76   2.16   2.26   2.60   3.09   3.27   3.38   3.66   4.70   4.87   5.06   5.24   5.71   5.85   5.95
GDT RMS_ALL_CA  14.02  14.01  13.82  13.94  14.33  14.29  14.55  14.51  14.41  17.24  17.27  17.23  16.91  15.15  15.13  15.56  15.38  15.55  15.54  15.16

#      Molecule1      Molecule2       DISTANCE
LGA    R      17      R      17         37.855
LGA    P      18      P      18         32.036
LGA    W      19      W      19         28.581
LGA    W      20      W      20         24.960
LGA    G      21      G      21         25.351
LGA    L      22      L      22         21.622
LGA    P      23      P      23         19.249
LGA    C      24      C      24         19.755
LGA    T      25      T      25         25.314
LGA    V      26      V      26         24.001
LGA    T      27      T      27         28.103
LGA    P      28      P      28         26.069
LGA    C      29      C      29         22.858
LGA    F      30      F      30         19.649
LGA    G      31      G      31         16.603
LGA    A      32      A      32         10.665
LGA    R      33      R      33          6.718
LGA    L      34      L      34          4.985
LGA    V      35      V      35          6.237
LGA    Q      36      Q      36          8.334
LGA    E      37      E      37         13.078
LGA    G      38      G      38         17.325
LGA    N      39      N      39         18.019
LGA    R      40      R      40         16.409
LGA    L      41      L      41         13.701
LGA    H      42      H      42         13.905
LGA    Y      43      Y      43         12.169
LGA    L      44      L      44         14.378
LGA    A      45      A      45         12.852
LGA    D      46      D      46         13.752
LGA    R      47      R      47         15.047
LGA    A      48      A      48         11.705
LGA    G      49      G      49         11.995
LGA    I      50      I      50         10.008
LGA    R      51      R      51         13.337
LGA    G      52      G      52         12.616
LGA    L      53      L      53          7.633
LGA    F      54      F      54          1.935
LGA    S      55      S      55          3.496
LGA    D      56      D      56          2.991
LGA    A      57      A      57          3.646
LGA    D      58      D      58          2.797
LGA    A      59      A      59          0.847
LGA    Y      60      Y      60          1.089
LGA    H      61      H      61          0.548
LGA    L      62      L      62          1.888
LGA    D      63      D      63          2.180
LGA    Q      64      Q      64          2.509
LGA    A      65      A      65          3.207
LGA    F      66      F      66          3.629
LGA    P      67      P      67          3.281
LGA    L      68      L      68          2.452
LGA    L      69      L      69          2.318
LGA    M      70      M      70          2.139
LGA    K      71      K      71          1.561
LGA    Q      72      Q      72          0.800
LGA    L      73      L      73          0.761
LGA    E      74      E      74          0.616
LGA    L      75      L      75          0.710
LGA    M      76      M      76          0.836
LGA    L      77      L      77          0.649
LGA    T      78      T      78          1.507
LGA    S      79      S      79          1.940
LGA    G      80      G      80          7.417
LGA    E      81      E      81          7.359
LGA    L      82      L      82          8.742
LGA    N      83      N      83         12.944
LGA    P      84      P      84         15.968
LGA    R      85      R      85         16.328
LGA    H      86      H      86         13.025
LGA    Q      87      Q      87          9.961
LGA    H      88      H      88          3.761
LGA    T      89      T      89          4.482
LGA    V      90      V      90          7.531
LGA    T      91      T      91         13.354
LGA    L      92      L      92         16.615
LGA    Y      93      Y      93         22.820
LGA    A      94      A      94         22.938
LGA    K      95      K      95         25.841
LGA    G      96      G      96         22.076
LGA    L      97      L      97         14.804
LGA    T      98      T      98         10.560
LGA    C      99      C      99         12.029
LGA    K     100      K     100         15.139
LGA    A     101      A     101         14.583
LGA    D     102      D     102         14.010
LGA    T     103      T     103         14.180
LGA    L     104      L     104         14.106
LGA    S     105      S     105         19.671
LGA    S     106      S     106         17.705
LGA    C     107      C     107         21.476
LGA    D     108      D     108         15.544
LGA    Y     109      Y     109          9.617
LGA    V     110      V     110          8.502
LGA    Y     111      Y     111          3.238
LGA    L     112      L     112          2.202
LGA    A     113      A     113          4.512
LGA    V     114      V     114          7.744
LGA    Y     115      Y     115         12.309
LGA    P     116      P     116         16.639
LGA    T     117      T     117         15.465

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  101  101    4.0     29    2.26    27.228    23.530     1.226

LGA_LOCAL      RMSD =  2.265  Number of atoms =   29  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 14.403  Number of atoms =  101 
Std_ALL_ATOMS  RMSD = 13.619  (standard rmsd on all 101 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.331781 * X  +  -0.531801 * Y  +   0.779172 * Z  +  43.777138
  Y_new =  -0.204661 * X  +   0.846862 * Y  +   0.490854 * Z  +  29.280602
  Z_new =  -0.920888 * X  +   0.003390 * Y  +  -0.389811 * Z  +  45.625000 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   3.132896   -0.008697  [ DEG:   179.5017     -0.4983 ]
  Theta =   1.170353    1.971239  [ DEG:    67.0563    112.9437 ]
  Phi   =  -2.588872    0.552721  [ DEG:  -148.3314     31.6686 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0304TS168_4-D1                               
REMARK     2: T0304_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0304TS168_4-D1.T0304_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  101  101   4.0   29   2.26  23.530    13.62
REMARK  ---------------------------------------------------------- 
MOLECULE T0304TS168_4-D1
PFRMAT TS
TARGET T0304
MODEL 4
PARENT N/A
ATOM     17  CA  ARG    17      32.068  50.995  57.951  1.00 25.00           C
ATOM     18  CA  PRO    18      35.200  49.298  56.666  1.00 25.00           C
ATOM     19  CA  TRP    19      38.570  47.534  56.715  1.00 25.00           C
ATOM     20  CA  TRP    20      39.719  44.455  58.561  1.00 25.00           C
ATOM     21  CA  GLY    21      43.176  44.426  60.105  1.00 25.00           C
ATOM     22  CA  LEU    22      45.035  41.164  60.504  1.00 25.00           C
ATOM     23  CA  PRO    23      43.940  40.495  56.886  1.00 25.00           C
ATOM     24  CA  CYS    24      45.053  37.690  54.480  1.00 25.00           C
ATOM     25  CA  THR    25      45.826  35.315  57.402  1.00 25.00           C
ATOM     26  CA  VAL    26      45.520  32.563  54.751  1.00 25.00           C
ATOM     27  CA  THR    27      47.075  29.921  56.966  1.00 25.00           C
ATOM     28  CA  PRO    28      47.944  26.531  55.460  1.00 25.00           C
ATOM     29  CA  CYS    29      51.555  26.263  54.220  1.00 25.00           C
ATOM     30  CA  PHE    30      54.507  25.014  52.179  1.00 25.00           C
ATOM     31  CA  GLY    31      54.230  21.268  51.434  1.00 25.00           C
ATOM     32  CA  ALA    32      50.466  21.382  52.131  1.00 25.00           C
ATOM     33  CA  ARG    33      50.099  24.388  49.787  1.00 25.00           C
ATOM     34  CA  LEU    34      52.041  22.529  47.058  1.00 25.00           C
ATOM     35  CA  VAL    35      49.783  19.468  47.503  1.00 25.00           C
ATOM     36  CA  GLN    36      46.675  21.690  47.231  1.00 25.00           C
ATOM     37  CA  GLU    37      48.061  23.279  44.034  1.00 25.00           C
ATOM     38  CA  GLY    38      48.737  19.806  42.571  1.00 25.00           C
ATOM     39  CA  ASN    39      45.165  18.722  43.429  1.00 25.00           C
ATOM     40  CA  ARG    40      43.780  21.872  41.748  1.00 25.00           C
ATOM     41  CA  LEU    41      45.882  21.160  38.627  1.00 25.00           C
ATOM     42  CA  HIS    42      44.587  17.557  38.546  1.00 25.00           C
ATOM     43  CA  TYR    43      40.984  18.819  38.849  1.00 25.00           C
ATOM     44  CA  LEU    44      41.580  21.284  35.978  1.00 25.00           C
ATOM     45  CA  ALA    45      43.025  18.465  33.825  1.00 25.00           C
ATOM     46  CA  ASP    46      39.977  16.279  34.597  1.00 25.00           C
ATOM     47  CA  ARG    47      37.639  19.157  33.636  1.00 25.00           C
ATOM     48  CA  ALA    48      36.947  22.801  34.632  1.00 25.00           C
ATOM     49  CA  GLY    49      38.307  23.743  31.191  1.00 25.00           C
ATOM     50  CA  ILE    50      41.996  24.294  30.457  1.00 25.00           C
ATOM     51  CA  ARG    51      44.879  25.797  28.575  1.00 25.00           C
ATOM     52  CA  GLY    52      43.910  23.879  25.482  1.00 25.00           C
ATOM     53  CA  LEU    53      42.177  20.518  25.907  1.00 25.00           C
ATOM     54  CA  PHE    54      41.737  17.334  27.945  1.00 25.00           C
ATOM     55  CA  SER    55      42.750  13.828  27.058  1.00 25.00           C
ATOM     56  CA  ASP    56      46.132  11.998  27.105  1.00 25.00           C
ATOM     57  CA  ALA    57      49.135  14.056  25.918  1.00 25.00           C
ATOM     58  CA  ASP    58      47.147  17.292  26.418  1.00 25.00           C
ATOM     59  CA  ALA    59      46.172  16.174  29.950  1.00 25.00           C
ATOM     60  CA  TYR    60      49.837  15.393  30.741  1.00 25.00           C
ATOM     61  CA  HIS    61      50.876  18.847  29.454  1.00 25.00           C
ATOM     62  CA  LEU    62      48.189  20.494  31.628  1.00 25.00           C
ATOM     63  CA  ASP    63      49.420  18.534  34.678  1.00 25.00           C
ATOM     64  CA  GLN    64      53.019  19.632  33.963  1.00 25.00           C
ATOM     65  CA  ALA    65      51.875  23.276  33.679  1.00 25.00           C
ATOM     66  CA  PHE    66      50.012  22.977  37.011  1.00 25.00           C
ATOM     67  CA  PRO    67      53.140  21.502  38.656  1.00 25.00           C
ATOM     68  CA  LEU    68      55.255  24.379  37.271  1.00 25.00           C
ATOM     69  CA  LEU    69      52.730  26.920  38.626  1.00 25.00           C
ATOM     70  CA  MET    70      52.830  25.226  42.059  1.00 25.00           C
ATOM     71  CA  LYS    71      56.658  25.338  42.030  1.00 25.00           C
ATOM     72  CA  GLN    72      56.567  29.058  41.125  1.00 25.00           C
ATOM     73  CA  LEU    73      54.109  29.720  43.987  1.00 25.00           C
ATOM     74  CA  GLU    74      56.392  27.835  46.416  1.00 25.00           C
ATOM     75  CA  LEU    75      59.395  29.893  45.230  1.00 25.00           C
ATOM     76  CA  MET    76      57.406  33.128  45.730  1.00 25.00           C
ATOM     77  CA  LEU    77      56.432  32.011  49.261  1.00 25.00           C
ATOM     78  CA  THR    78      60.097  31.230  50.053  1.00 25.00           C
ATOM     79  CA  SER    79      60.709  34.957  49.414  1.00 25.00           C
ATOM     80  CA  GLY    80      63.318  35.250  46.602  1.00 25.00           C
ATOM     81  CA  GLU    81      61.904  38.296  44.874  1.00 25.00           C
ATOM     82  CA  LEU    82      59.409  40.023  47.258  1.00 25.00           C
ATOM     83  CA  ASN    83      60.393  43.127  45.232  1.00 25.00           C
ATOM     84  CA  PRO    84      58.156  45.479  47.105  1.00 25.00           C
ATOM     85  CA  ARG    85      56.017  45.317  43.913  1.00 25.00           C
ATOM     86  CA  HIS    86      55.450  41.723  42.809  1.00 25.00           C
ATOM     87  CA  GLN    87      53.073  39.981  45.215  1.00 25.00           C
ATOM     88  CA  HIS    88      49.647  38.548  44.716  1.00 25.00           C
ATOM     89  CA  THR    89      47.730  35.934  46.671  1.00 25.00           C
ATOM     90  CA  VAL    90      44.971  33.280  46.816  1.00 25.00           C
ATOM     91  CA  THR    91      43.608  30.355  48.864  1.00 25.00           C
ATOM     92  CA  LEU    92      44.351  26.789  50.144  1.00 25.00           C
ATOM     93  CA  TYR    93      41.718  25.576  52.619  1.00 25.00           C
ATOM     94  CA  ALA    94      39.282  26.546  49.860  1.00 25.00           C
ATOM     95  CA  LYS    95      37.565  29.589  48.411  1.00 25.00           C
ATOM     96  CA  GLY    96      36.499  29.138  44.773  1.00 25.00           C
ATOM     97  CA  LEU    97      39.305  28.606  42.283  1.00 25.00           C
ATOM     98  CA  THR    98      39.436  26.036  39.458  1.00 25.00           C
ATOM     99  CA  CYS    99      38.058  22.975  41.347  1.00 25.00           C
ATOM    100  CA  LYS   100      36.404  19.706  42.493  1.00 25.00           C
ATOM    101  CA  ALA   101      36.611  20.907  46.108  1.00 25.00           C
ATOM    102  CA  ASP   102      34.697  24.221  45.775  1.00 25.00           C
ATOM    103  CA  THR   103      34.439  24.165  49.569  1.00 25.00           C
ATOM    104  CA  LEU   104      36.565  21.532  51.322  1.00 25.00           C
ATOM    105  CA  SER   105      34.092  18.680  51.328  1.00 25.00           C
ATOM    106  CA  SER   106      36.560  16.581  49.414  1.00 25.00           C
ATOM    107  CA  CYS   107      37.011  15.921  45.710  1.00 25.00           C
ATOM    108  CA  ASP   108      40.503  17.179  46.375  1.00 25.00           C
ATOM    109  CA  TYR   109      42.358  19.144  49.108  1.00 25.00           C
ATOM    110  CA  VAL   110      41.705  22.033  46.667  1.00 25.00           C
ATOM    111  CA  TYR   111      42.229  25.399  44.975  1.00 25.00           C
ATOM    112  CA  LEU   112      45.225  27.763  44.627  1.00 25.00           C
ATOM    113  CA  ALA   113      46.856  27.871  41.185  1.00 25.00           C
ATOM    114  CA  VAL   114      45.624  31.436  40.993  1.00 25.00           C
ATOM    115  CA  TYR   115      44.674  35.104  40.299  1.00 25.00           C
ATOM    116  CA  PRO   116      41.313  36.228  41.664  1.00 25.00           C
ATOM    117  CA  THR   117      39.029  38.212  39.351  1.00 25.00           C
TER
END
