
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  147 (  147),  selected  147 , name T0303TS393_3-D1
# Molecule2: number of CA atoms  147 ( 1151),  selected  147 , name T0303_D1.pdb
# PARAMETERS: T0303TS393_3-D1.T0303_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   147         1 - 224         4.53     4.53
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    51       144 - 194         1.94     4.69
  LCS_AVERAGE:     21.80

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       175 - 190         0.97     5.46
  LONGEST_CONTINUOUS_SEGMENT:    16       176 - 191         0.99     5.43
  LONGEST_CONTINUOUS_SEGMENT:    16       177 - 192         1.00     5.32
  LONGEST_CONTINUOUS_SEGMENT:    16       178 - 193         0.98     5.29
  LCS_AVERAGE:      5.56

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  147
LCS_GDT     M       1     M       1      3    4  147     0    7   10   33   48   76   98  110  118  129  131  135  137  140  141  141  142  143  143  144 
LCS_GDT     T       2     T       2      5    6  147     0    4   10   29   45   77   98  110  123  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     Q       3     Q       3      5    6  147     2   13   34   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     F       4     F       4      5    8  147     3    9   31   59   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     K       5     K       5      5    8  147     3    6   12   23   38   66   90  105  116  127  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     L       6     L       6      5   11  147     3   10   23   47   75   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     I       7     I       7      4   11  147     5   18   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     G       8     G       8      4   11  147     3    7   11   21   40   61   94  112  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     F       9     F       9      6   11  147     4   18   33   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     D      10     D      10      6   11  147     3   13   38   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     L      11     L      11      6   11  147     3   16   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     D      12     D      12      6   11  147     3    7   18   46   73   94  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     G      13     G      13      6   11  147     3    7   23   50   74   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     T      14     T      14      6   11  147     3    7   22   51   76   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     L      15     L      15      6   18  147     3    9   32   56   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     V      16     V      16      6   18  147     4    9   30   55   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     N      17     N      17      3   20  147     2    4   14   44   69   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     R      95     R      95      4   23  147     3   10   13   38   66   92  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     L      96     L      96      4   23  147     3   10   13   30   66   92  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     Y      97     Y      97      4   23  147     3    8   17   38   67   92  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     P      98     P      98      4   23  147     3    4   14   24   55   83  104  115  123  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     N      99     N      99     11   37  147     3   13   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     V     100     V     100     11   37  147    11   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     K     101     K     101     11   37  147    11   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     E     102     E     102     11   37  147    11   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     T     103     T     103     11   37  147    10   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     L     104     L     104     11   37  147    10   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     E     105     E     105     11   37  147    11   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     A     106     A     106     11   37  147    10   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     L     107     L     107     11   37  147    10   20   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     K     108     K     108     11   37  147    10   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     A     109     A     109     11   37  147    11   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     Q     110     Q     110      4   37  147     3    5   17   38   63   88  106  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     G     111     G     111      4   37  147     5   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     Y     112     Y     112      4   37  147    11   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     I     113     I     113      4   37  147     3    6   32   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     L     114     L     114      4   37  147     4    6   11   29   50   84  105  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     A     115     A     115      4   37  147     4    4   19   44   70   94  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     V     116     V     116      4   37  147     4   13   23   47   77   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     V     117     V     117      4   37  147     8   18   33   55   79   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     T     118     T     118     10   37  147     3   15   36   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     N     119     N     119     10   37  147     3   12   32   55   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     K     120     K     120     10   37  147     3   13   32   55   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     P     121     P     121     11   37  147     3    9   21   48   74   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     T     122     T     122     11   37  147     4   12   33   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     K     123     K     123     11   37  147     4   12   33   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     H     124     H     124     11   37  147     4    9   31   53   78   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     V     125     V     125     11   37  147     7   12   33   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     Q     126     Q     126     11   37  147     7   16   33   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     P     127     P     127     11   37  147     7   16   33   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     I     128     I     128     11   37  147     7    9   18   47   78   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     L     129     L     129     11   37  147     7   10   19   49   74   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     T     130     T     130     11   37  147     7   15   31   57   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     A     131     A     131     11   37  147     7    9   31   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     F     132     F     132      3   37  147     9   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     G     133     G     133      6   37  147     4   15   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     I     134     I     134      6   37  147     3   14   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     D     135     D     135      6   37  147     4   12   33   59   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     H     136     H     136      6   20  147     4    5    7   12   37   56   83  105  117  128  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     L     137     L     137      6    8  147     4    5    7    7   10   42   59   78  109  123  130  135  138  140  141  141  142  143  143  144 
LCS_GDT     F     138     F     138      6    8  147     4    8   20   46   77   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     S     139     S     139      4    8  147     3    6   22   43   74   93  106  117  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     E     140     E     140      4    6  147     3    4    5    5   22   36   69   94  113  122  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     M     141     M     141      4    6  147     3    5    7    8   13   26   45   62   94  120  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     L     142     L     142      4   11  147     3    7   10   23   45   65   90  113  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     G     143     G     143      6   11  147     3    5   12   29   48   65   93  115  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     G     144     G     144      6   51  147     3    6   16   31   48   78  105  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     Q     145     Q     145      6   51  147     3   10   31   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     S     146     S     146      6   51  147     3   11   21   48   75   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     L     147     L     147      6   51  147     3   12   21   50   77   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     P     148     P     148      6   51  147    11   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     E     149     E     149      6   51  147     3    9   27   54   72   94  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     I     150     I     150      5   51  147     3    4   27   53   74   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     K     151     K     151      5   51  147     3    9   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     P     152     P     152      5   51  147     3   10   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     H     153     H     153      5   51  147     5   16   36   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     P     154     P     154     13   51  147    11   16   40   57   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     A     155     A     155     13   51  147    11   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     P     156     P     156     13   51  147    11   20   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     F     157     F     157     13   51  147    11   19   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     Y     158     Y     158     13   51  147    11   17   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     Y     159     Y     159     13   51  147    11   18   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     L     160     L     160     13   51  147    11   19   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     C     161     C     161     13   51  147    11   12   31   58   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     G     162     G     162     13   51  147    11   12   32   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     K     163     K     163     13   51  147    11   12   33   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     F     164     F     164     13   51  147    11   12   30   58   79   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     G     165     G     165     13   51  147     3   10   30   54   79   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     L     166     L     166     13   51  147     3    9   25   53   79   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     Y     167     Y     167      3   51  147     4   18   38   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     P     168     P     168      4   51  147     4   11   29   57   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     K     169     K     169      4   51  147     3    6   25   53   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     Q     170     Q     170      7   51  147     3   10   30   56   79   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     I     171     I     171      7   51  147     4   18   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     L     172     L     172      7   51  147     5   18   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     F     173     F     173      7   51  147     8   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     V     174     V     174      7   51  147     3   11   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     G     175     G     175     16   51  147     4   12   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     D     176     D     176     16   51  147     4   20   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     S     177     S     177     16   51  147     5   14   37   57   79   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     Q     178     Q     178     16   51  147     6   20   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     N     179     N     179     16   51  147     6   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     D     180     D     180     16   51  147     8   18   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     I     181     I     181     16   51  147     8   18   39   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     F     182     F     182     16   51  147     8   18   35   57   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     A     183     A     183     16   51  147     8   18   33   57   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     A     184     A     184     16   51  147     8   18   33   57   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     H     185     H     185     16   51  147     8   18   33   57   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     S     186     S     186     16   51  147     8   14   30   50   71   92  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     A     187     A     187     16   51  147     4   18   33   55   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     G     188     G     188     16   51  147     5   18   40   59   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     C     189     C     189     16   51  147     5   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     A     190     A     190     16   51  147    11   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     V     191     V     191     16   51  147    11   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     V     192     V     192     16   51  147     7   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     G     193     G     193     16   51  147     3   11   32   59   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     L     194     L     194     15   51  147    11   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     T     195     T     195      4   49  147     3    4    9   23   34   74  106  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     Y     196     Y     196      4   49  147     3    7   13   26   45   74  106  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     G     197     G     197      4   46  147     3    4   11   37   64   89  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     Y     198     Y     198      4   22  147     3    4   12   32   51   68   95  110  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     N     199     N     199      4   22  147     2    8   25   40   69   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     Y     200     Y     200      4    8  147     1    3    7   13   25   40   63   91  109  124  131  134  138  140  141  141  142  143  143  144 
LCS_GDT     N     201     N     201      3    8  147     2    3    7   15   21   32   54   70   95  117  125  134  137  140  141  141  142  143  143  144 
LCS_GDT     I     202     I     202      3    8  147     3    3    3   20   27   36   59   80  109  121  129  134  138  140  141  141  142  143  143  144 
LCS_GDT     P     203     P     203      4    7  147     4   12   18   36   70   89  106  117  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     I     204     I     204      5    7  147     4   16   32   56   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     A     205     A     205      5    7  147     4    6   25   53   76   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     Q     206     Q     206      5    7  147     4    5   20   36   66   86  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     S     207     S     207      5    7  147     3    9   30   55   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     K     208     K     208      5    7  147     8   13   21   37   68   89  106  117  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     P     209     P     209      4    7  147    11   22   40   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     D     210     D     210      4    7  147     2   12   33   60   80   95  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     W     211     W     211      4    7  147     3    4   17   34   61   85  106  117  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     I     212     I     212      4    7  147     3    7   23   47   74   94  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     F     213     F     213      4    7  147     3    9   23   47   74   94  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     D     214     D     214      4    7  147     3    3    5   17   21   38   59   79  114  118  129  134  137  140  141  141  142  143  143  144 
LCS_GDT     D     215     D     215      3    7  147     3    5   11   23   43   74   97  110  123  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     F     216     F     216      5    9  147     3    4    7   33   58   91  107  118  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     A     217     A     217      7    9  147     3    4   20   40   67   91  106  117  125  129  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     D     218     D     218      7    9  147     3    7   10   18   31   48   70   97  113  127  131  135  138  140  141  141  142  143  143  144 
LCS_GDT     I     219     I     219      7    9  147     5    6    8   15   28   36   43   66   86  108  118  130  134  136  138  140  142  143  143  144 
LCS_GDT     L     220     L     220      7    9  147     5    6    7   11   19   34   55   75   91  107  118  124  129  135  137  139  141  143  143  144 
LCS_GDT     K     221     K     221      7    9  147     5    6    7   13   22   36   42   55   80   90  106  119  125  131  136  137  138  140  142  144 
LCS_GDT     I     222     I     222      7    9  147     5    6    7   11   11   14   19   28   38   42   53   63   80   93  105  115  121  125  134  137 
LCS_GDT     T     223     T     223      7    9  147     5    6    7   11   11   11   12   13   18   29   38   46   63   79   89   98  108  117  124  129 
LCS_GDT     Q     224     Q     224      3    9  147     3    3    3    5    9   11   12   13   14   15   16   18   18   32   37   42   48   62   78   83 
LCS_AVERAGE  LCS_A:  42.45  (   5.56   21.80  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     22     40     60     80     95    107    118    125    129    131    135    138    140    141    141    142    143    143    144 
GDT PERCENT_CA   7.48  14.97  27.21  40.82  54.42  64.63  72.79  80.27  85.03  87.76  89.12  91.84  93.88  95.24  95.92  95.92  96.60  97.28  97.28  97.96
GDT RMS_LOCAL    0.29   0.65   1.05   1.46   1.73   1.95   2.17   2.42   2.56   2.69   2.75   2.93   3.09   3.20   3.26   3.26   3.33   3.44   3.44   3.58
GDT RMS_ALL_CA   7.16   4.74   4.70   4.60   4.58   4.57   4.57   4.60   4.59   4.61   4.61   4.60   4.59   4.62   4.64   4.64   4.62   4.60   4.60   4.58

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          6.638
LGA    T       2      T       2          5.900
LGA    Q       3      Q       3          1.633
LGA    F       4      F       4          1.613
LGA    K       5      K       5          6.534
LGA    L       6      L       6          3.710
LGA    I       7      I       7          1.299
LGA    G       8      G       8          4.738
LGA    F       9      F       9          1.592
LGA    D      10      D      10          0.689
LGA    L      11      L      11          1.484
LGA    D      12      D      12          3.034
LGA    G      13      G      13          2.726
LGA    T      14      T      14          2.595
LGA    L      15      L      15          2.064
LGA    V      16      V      16          2.097
LGA    N      17      N      17          3.398
LGA    R      95      R      95          3.879
LGA    L      96      L      96          3.493
LGA    Y      97      Y      97          3.446
LGA    P      98      P      98          4.524
LGA    N      99      N      99          2.696
LGA    V     100      V     100          1.237
LGA    K     101      K     101          1.113
LGA    E     102      E     102          1.743
LGA    T     103      T     103          1.943
LGA    L     104      L     104          1.150
LGA    E     105      E     105          1.060
LGA    A     106      A     106          1.888
LGA    L     107      L     107          1.899
LGA    K     108      K     108          0.889
LGA    A     109      A     109          1.368
LGA    Q     110      Q     110          3.846
LGA    G     111      G     111          1.359
LGA    Y     112      Y     112          0.804
LGA    I     113      I     113          2.332
LGA    L     114      L     114          3.990
LGA    A     115      A     115          3.034
LGA    V     116      V     116          2.833
LGA    V     117      V     117          2.764
LGA    T     118      T     118          0.809
LGA    N     119      N     119          2.024
LGA    K     120      K     120          2.012
LGA    P     121      P     121          2.775
LGA    T     122      T     122          1.724
LGA    K     123      K     123          1.559
LGA    H     124      H     124          2.317
LGA    V     125      V     125          1.786
LGA    Q     126      Q     126          1.695
LGA    P     127      P     127          1.750
LGA    I     128      I     128          2.588
LGA    L     129      L     129          2.949
LGA    T     130      T     130          2.070
LGA    A     131      A     131          1.882
LGA    F     132      F     132          0.405
LGA    G     133      G     133          2.191
LGA    I     134      I     134          1.253
LGA    D     135      D     135          2.143
LGA    H     136      H     136          5.990
LGA    L     137      L     137          6.364
LGA    F     138      F     138          2.799
LGA    S     139      S     139          4.089
LGA    E     140      E     140          6.515
LGA    M     141      M     141          6.847
LGA    L     142      L     142          4.733
LGA    G     143      G     143          4.499
LGA    G     144      G     144          3.983
LGA    Q     145      Q     145          2.273
LGA    S     146      S     146          3.103
LGA    L     147      L     147          2.781
LGA    P     148      P     148          1.786
LGA    E     149      E     149          3.464
LGA    I     150      I     150          3.138
LGA    K     151      K     151          2.743
LGA    P     152      P     152          2.332
LGA    H     153      H     153          0.683
LGA    P     154      P     154          2.963
LGA    A     155      A     155          2.273
LGA    P     156      P     156          2.195
LGA    F     157      F     157          2.103
LGA    Y     158      Y     158          1.269
LGA    Y     159      Y     159          0.950
LGA    L     160      L     160          1.409
LGA    C     161      C     161          2.243
LGA    G     162      G     162          2.052
LGA    K     163      K     163          2.376
LGA    F     164      F     164          2.859
LGA    G     165      G     165          3.557
LGA    L     166      L     166          3.262
LGA    Y     167      Y     167          1.600
LGA    P     168      P     168          1.993
LGA    K     169      K     169          2.126
LGA    Q     170      Q     170          3.176
LGA    I     171      I     171          1.428
LGA    L     172      L     172          1.367
LGA    F     173      F     173          0.914
LGA    V     174      V     174          2.884
LGA    G     175      G     175          2.001
LGA    D     176      D     176          2.409
LGA    S     177      S     177          3.440
LGA    Q     178      Q     178          2.302
LGA    N     179      N     179          1.948
LGA    D     180      D     180          2.384
LGA    I     181      I     181          2.328
LGA    F     182      F     182          2.694
LGA    A     183      A     183          2.769
LGA    A     184      A     184          2.536
LGA    H     185      H     185          2.736
LGA    S     186      S     186          3.512
LGA    A     187      A     187          2.714
LGA    G     188      G     188          2.106
LGA    C     189      C     189          1.358
LGA    A     190      A     190          1.525
LGA    V     191      V     191          1.944
LGA    V     192      V     192          1.579
LGA    G     193      G     193          0.972
LGA    L     194      L     194          1.848
LGA    T     195      T     195          3.962
LGA    Y     196      Y     196          3.889
LGA    G     197      G     197          3.567
LGA    Y     198      Y     198          5.053
LGA    N     199      N     199          2.894
LGA    Y     200      Y     200          6.987
LGA    N     201      N     201          8.803
LGA    I     202      I     202          7.585
LGA    P     203      P     203          4.598
LGA    I     204      I     204          2.213
LGA    A     205      A     205          2.395
LGA    Q     206      Q     206          3.967
LGA    S     207      S     207          2.754
LGA    K     208      K     208          4.628
LGA    P     209      P     209          2.472
LGA    D     210      D     210          3.213
LGA    W     211      W     211          4.583
LGA    I     212      I     212          3.411
LGA    F     213      F     213          3.566
LGA    D     214      D     214          8.117
LGA    D     215      D     215          5.686
LGA    F     216      F     216          3.553
LGA    A     217      A     217          4.355
LGA    D     218      D     218          6.162
LGA    I     219      I     219          8.675
LGA    L     220      L     220         10.672
LGA    K     221      K     221         12.471
LGA    I     222      I     222         17.228
LGA    T     223      T     223         19.077
LGA    Q     224      Q     224         24.607

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  147  147    4.0    118    2.42    57.993    53.866     4.676

LGA_LOCAL      RMSD =  2.424  Number of atoms =  118  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  4.623  Number of atoms =  147 
Std_ALL_ATOMS  RMSD =  4.533  (standard rmsd on all 147 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.381144 * X  +  -0.900159 * Y  +  -0.210816 * Z  + -10.128923
  Y_new =  -0.267278 * X  +   0.325578 * Y  +  -0.906952 * Z  +  80.214943
  Z_new =   0.885037 * X  +  -0.289333 * Y  +  -0.364685 * Z  +  16.689503 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.470903    0.670690  [ DEG:  -141.5723     38.4277 ]
  Theta =  -1.086574   -2.055018  [ DEG:   -62.2561   -117.7439 ]
  Phi   =  -2.530027    0.611566  [ DEG:  -144.9599     35.0401 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0303TS393_3-D1                               
REMARK     2: T0303_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0303TS393_3-D1.T0303_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  147  147   4.0  118   2.42  53.866     4.53
REMARK  ---------------------------------------------------------- 
MOLECULE T0303TS393_3-D1
PFRMAT TS
TARGET T0303
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1     -18.447  52.640   3.688  1.00 25.00           C
ATOM      2  CA  THR     2     -15.663  55.182   3.291  1.00 25.00           C
ATOM      3  CA  GLN     3     -17.699  57.387   5.672  1.00 25.00           C
ATOM      4  CA  PHE     4     -17.053  58.366   9.277  1.00 25.00           C
ATOM      5  CA  LYS     5     -18.266  61.961   9.261  1.00 25.00           C
ATOM      6  CA  LEU     6     -15.574  62.443  11.854  1.00 25.00           C
ATOM      7  CA  ILE     7     -14.729  65.672  13.654  1.00 25.00           C
ATOM      8  CA  GLY     8     -15.314  69.454  13.171  1.00 25.00           C
ATOM      9  CA  PHE     9     -13.517  71.191  16.078  1.00 25.00           C
ATOM     10  CA  ASP    10     -10.503  73.449  15.966  1.00 25.00           C
ATOM     11  CA  LEU    11     -10.072  76.621  18.039  1.00 25.00           C
ATOM     12  CA  ASP    12     -10.671  79.332  15.450  1.00 25.00           C
ATOM     13  CA  GLY    13     -13.841  79.760  13.349  1.00 25.00           C
ATOM     14  CA  THR    14     -14.809  76.180  12.871  1.00 25.00           C
ATOM     15  CA  LEU    15     -15.752  75.687  16.471  1.00 25.00           C
ATOM     16  CA  VAL    16     -14.800  78.080  19.248  1.00 25.00           C
ATOM     17  CA  ASN    17     -13.586  81.204  21.043  1.00 25.00           C
ATOM     95  CA  ARG    95     -19.953  83.401  26.726  1.00 25.00           C
ATOM     96  CA  LEU    96     -20.609  80.394  24.397  1.00 25.00           C
ATOM     97  CA  TYR    97     -20.958  81.184  20.659  1.00 25.00           C
ATOM     98  CA  PRO    98     -23.607  78.534  20.663  1.00 25.00           C
ATOM     99  CA  ASN    99     -23.375  78.155  16.842  1.00 25.00           C
ATOM    100  CA  VAL   100     -20.930  75.326  17.537  1.00 25.00           C
ATOM    101  CA  LYS   101     -22.495  73.633  20.595  1.00 25.00           C
ATOM    102  CA  GLU   102     -25.174  72.037  18.373  1.00 25.00           C
ATOM    103  CA  THR   103     -22.467  70.771  15.977  1.00 25.00           C
ATOM    104  CA  LEU   104     -20.516  69.294  18.922  1.00 25.00           C
ATOM    105  CA  GLU   105     -23.688  67.560  20.186  1.00 25.00           C
ATOM    106  CA  ALA   106     -24.325  66.126  16.691  1.00 25.00           C
ATOM    107  CA  LEU   107     -20.719  64.845  16.533  1.00 25.00           C
ATOM    108  CA  LYS   108     -21.123  63.211  19.973  1.00 25.00           C
ATOM    109  CA  ALA   109     -24.376  61.547  18.828  1.00 25.00           C
ATOM    110  CA  GLN   110     -23.042  58.052  19.520  1.00 25.00           C
ATOM    111  CA  GLY   111     -20.789  57.773  16.540  1.00 25.00           C
ATOM    112  CA  TYR   112     -18.046  60.313  15.937  1.00 25.00           C
ATOM    113  CA  ILE   113     -14.710  61.871  16.990  1.00 25.00           C
ATOM    114  CA  LEU   114     -11.189  62.922  18.042  1.00 25.00           C
ATOM    115  CA  ALA   115      -9.161  64.542  20.900  1.00 25.00           C
ATOM    116  CA  VAL   116      -8.943  68.166  22.063  1.00 25.00           C
ATOM    117  CA  VAL   117      -8.319  71.275  19.957  1.00 25.00           C
ATOM    118  CA  THR   118      -6.070  73.503  17.887  1.00 25.00           C
ATOM    119  CA  ASN   119      -2.554  74.696  16.995  1.00 25.00           C
ATOM    120  CA  LYS   120      -3.335  77.090  19.826  1.00 25.00           C
ATOM    121  CA  PRO   121      -2.635  74.994  22.944  1.00 25.00           C
ATOM    122  CA  THR   122      -3.082  72.054  25.392  1.00 25.00           C
ATOM    123  CA  LYS   123      -3.886  74.372  28.333  1.00 25.00           C
ATOM    124  CA  HIS   124      -6.317  76.356  26.137  1.00 25.00           C
ATOM    125  CA  VAL   125      -8.013  73.104  25.035  1.00 25.00           C
ATOM    126  CA  GLN   126      -8.336  72.004  28.689  1.00 25.00           C
ATOM    127  CA  PRO   127      -9.872  75.393  29.599  1.00 25.00           C
ATOM    128  CA  ILE   128     -12.359  75.070  26.704  1.00 25.00           C
ATOM    129  CA  LEU   129     -13.303  71.548  27.876  1.00 25.00           C
ATOM    130  CA  THR   130     -13.831  72.849  31.439  1.00 25.00           C
ATOM    131  CA  ALA   131     -16.047  75.673  30.105  1.00 25.00           C
ATOM    132  CA  PHE   132     -18.725  77.242  27.845  1.00 25.00           C
ATOM    133  CA  GLY   133     -21.667  74.816  27.771  1.00 25.00           C
ATOM    134  CA  ILE   134     -18.982  72.199  26.928  1.00 25.00           C
ATOM    135  CA  ASP   135     -17.398  68.746  26.743  1.00 25.00           C
ATOM    136  CA  HIS   136     -17.903  69.154  22.970  1.00 25.00           C
ATOM    137  CA  LEU   137     -14.377  70.607  22.629  1.00 25.00           C
ATOM    138  CA  PHE   138     -12.945  67.662  24.613  1.00 25.00           C
ATOM    139  CA  SER   139     -14.818  65.198  22.357  1.00 25.00           C
ATOM    140  CA  GLU   140     -13.449  66.967  19.248  1.00 25.00           C
ATOM    141  CA  MET   141     -10.375  67.775  17.144  1.00 25.00           C
ATOM    142  CA  LEU   142      -6.742  67.391  18.096  1.00 25.00           C
ATOM    143  CA  GLY   143      -4.111  68.279  20.636  1.00 25.00           C
ATOM    144  CA  GLY   144      -0.871  70.184  21.126  1.00 25.00           C
ATOM    145  CA  GLN   145       1.563  70.170  24.005  1.00 25.00           C
ATOM    146  CA  SER   146       2.720  66.631  23.054  1.00 25.00           C
ATOM    147  CA  LEU   147       5.269  66.086  20.237  1.00 25.00           C
ATOM    148  CA  PRO   148       7.315  69.206  20.976  1.00 25.00           C
ATOM    149  CA  GLU   149       5.941  71.882  18.602  1.00 25.00           C
ATOM    150  CA  ILE   150       2.929  73.869  17.376  1.00 25.00           C
ATOM    151  CA  LYS   151       1.905  73.241  13.797  1.00 25.00           C
ATOM    152  CA  PRO   152       2.439  73.354   9.982  1.00 25.00           C
ATOM    153  CA  HIS   153       2.631  69.563  10.102  1.00 25.00           C
ATOM    154  CA  PRO   154       0.851  67.762  12.946  1.00 25.00           C
ATOM    155  CA  ALA   155       2.114  65.256  15.553  1.00 25.00           C
ATOM    156  CA  PRO   156      -0.950  65.953  17.742  1.00 25.00           C
ATOM    157  CA  PHE   157      -3.254  65.417  14.729  1.00 25.00           C
ATOM    158  CA  TYR   158      -1.495  62.107  13.943  1.00 25.00           C
ATOM    159  CA  TYR   159      -1.908  60.993  17.583  1.00 25.00           C
ATOM    160  CA  LEU   160      -5.629  61.890  17.461  1.00 25.00           C
ATOM    161  CA  CYS   161      -6.029  59.892  14.218  1.00 25.00           C
ATOM    162  CA  GLY   162      -4.275  56.890  15.822  1.00 25.00           C
ATOM    163  CA  LYS   163      -6.589  57.131  18.864  1.00 25.00           C
ATOM    164  CA  PHE   164      -9.645  57.249  16.560  1.00 25.00           C
ATOM    165  CA  GLY   165      -9.816  54.022  14.459  1.00 25.00           C
ATOM    166  CA  LEU   166     -10.407  55.308  10.920  1.00 25.00           C
ATOM    167  CA  TYR   167      -6.646  55.597  10.588  1.00 25.00           C
ATOM    168  CA  PRO   168      -7.818  58.973   9.327  1.00 25.00           C
ATOM    169  CA  LYS   169     -10.550  57.844   6.892  1.00 25.00           C
ATOM    170  CA  GLN   170     -12.686  60.876   7.844  1.00 25.00           C
ATOM    171  CA  ILE   171     -10.751  63.026  10.296  1.00 25.00           C
ATOM    172  CA  LEU   172     -12.794  65.811   8.754  1.00 25.00           C
ATOM    173  CA  PHE   173     -10.817  68.537  10.542  1.00 25.00           C
ATOM    174  CA  VAL   174     -10.558  72.276  11.006  1.00 25.00           C
ATOM    175  CA  GLY   175     -10.198  76.068  10.427  1.00 25.00           C
ATOM    176  CA  ASP   176      -9.629  79.812  10.606  1.00 25.00           C
ATOM    177  CA  SER   177      -5.941  80.013  11.665  1.00 25.00           C
ATOM    178  CA  GLN   178      -4.517  78.696   8.345  1.00 25.00           C
ATOM    179  CA  ASN   179      -2.496  76.764  10.962  1.00 25.00           C
ATOM    180  CA  ASP   180      -5.565  74.630  11.793  1.00 25.00           C
ATOM    181  CA  ILE   181      -6.100  73.904   8.072  1.00 25.00           C
ATOM    182  CA  PHE   182      -2.423  72.891   7.717  1.00 25.00           C
ATOM    183  CA  ALA   183      -2.745  70.570  10.745  1.00 25.00           C
ATOM    184  CA  ALA   184      -5.888  68.990   9.232  1.00 25.00           C
ATOM    185  CA  HIS   185      -4.053  68.461   5.913  1.00 25.00           C
ATOM    186  CA  SER   186      -1.127  66.826   7.763  1.00 25.00           C
ATOM    187  CA  ALA   187      -2.593  63.697   9.275  1.00 25.00           C
ATOM    188  CA  GLY   188      -4.117  62.398   6.009  1.00 25.00           C
ATOM    189  CA  CYS   189      -7.237  64.102   7.265  1.00 25.00           C
ATOM    190  CA  ALA   190      -9.696  65.551   4.776  1.00 25.00           C
ATOM    191  CA  VAL   191      -9.712  69.272   5.639  1.00 25.00           C
ATOM    192  CA  VAL   192     -12.783  71.455   6.356  1.00 25.00           C
ATOM    193  CA  GLY   193     -14.154  75.019   6.654  1.00 25.00           C
ATOM    194  CA  LEU   194     -13.862  78.468   8.240  1.00 25.00           C
ATOM    195  CA  THR   195     -17.546  78.681   9.229  1.00 25.00           C
ATOM    196  CA  TYR   196     -18.612  80.761  12.302  1.00 25.00           C
ATOM    197  CA  GLY   197     -16.283  83.398  10.812  1.00 25.00           C
ATOM    198  CA  TYR   198     -13.259  83.757   8.503  1.00 25.00           C
ATOM    199  CA  ASN   199      -9.698  84.957   7.910  1.00 25.00           C
ATOM    200  CA  TYR   200     -10.215  83.506   4.433  1.00 25.00           C
ATOM    201  CA  ASN   201     -12.699  82.429   1.804  1.00 25.00           C
ATOM    202  CA  ILE   202     -11.348  81.499  -1.657  1.00 25.00           C
ATOM    203  CA  PRO   203      -7.907  80.766  -0.145  1.00 25.00           C
ATOM    204  CA  ILE   204      -9.528  78.563   2.536  1.00 25.00           C
ATOM    205  CA  ALA   205     -11.481  76.674  -0.162  1.00 25.00           C
ATOM    206  CA  GLN   206      -8.257  76.145  -2.161  1.00 25.00           C
ATOM    207  CA  SER   207      -4.638  76.235  -1.145  1.00 25.00           C
ATOM    208  CA  LYS   208      -5.238  72.873   0.637  1.00 25.00           C
ATOM    209  CA  PRO   209      -8.543  73.248   2.392  1.00 25.00           C
ATOM    210  CA  ASP   210     -10.255  70.924  -0.078  1.00 25.00           C
ATOM    211  CA  TRP   211     -13.414  72.479  -1.557  1.00 25.00           C
ATOM    212  CA  ILE   212     -15.422  72.714   1.586  1.00 25.00           C
ATOM    213  CA  PHE   213     -18.740  74.182   2.641  1.00 25.00           C
ATOM    214  CA  ASP   214     -21.217  71.904   4.363  1.00 25.00           C
ATOM    215  CA  ASP   215     -21.449  72.454   8.151  1.00 25.00           C
ATOM    216  CA  PHE   216     -24.001  73.194  10.858  1.00 25.00           C
ATOM    217  CA  ALA   217     -26.062  74.368   7.852  1.00 25.00           C
ATOM    218  CA  ASP   218     -27.036  77.558   9.733  1.00 25.00           C
ATOM    219  CA  ILE   219     -23.361  78.200  10.597  1.00 25.00           C
ATOM    220  CA  LEU   220     -22.388  77.711   6.925  1.00 25.00           C
ATOM    221  CA  LYS   221     -25.125  80.163   5.847  1.00 25.00           C
ATOM    222  CA  ILE   222     -23.873  82.724   8.404  1.00 25.00           C
ATOM    223  CA  THR   223     -20.294  82.307   7.104  1.00 25.00           C
ATOM    224  CA  GLN   224     -18.304  85.343   6.122  1.00 25.00           C
TER
END
