
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  147 (  147),  selected  147 , name T0303TS168_2-D1
# Molecule2: number of CA atoms  147 ( 1151),  selected  147 , name T0303_D1.pdb
# PARAMETERS: T0303TS168_2-D1.T0303_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   147         1 - 224         4.92     4.92
  LCS_AVERAGE:    100.00

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    44       145 - 188         2.00     5.37
  LCS_AVERAGE:     19.75

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       176 - 191         0.99     7.66
  LONGEST_CONTINUOUS_SEGMENT:    16       177 - 192         0.91     7.82
  LCS_AVERAGE:      6.07

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  147
LCS_GDT     M       1     M       1      3    6  147     3   10   21   36   75   92  102  113  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     T       2     T       2      3    6  147     3    3   11   28   53   74  102  111  121  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     Q       3     Q       3      3   10  147     4   16   40   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     F       4     F       4      3   10  147     3   11   29   51   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     K       5     K       5      5   12  147     3    4    9   28   39   57   78   95  110  119  126  131  134  136  138  139  140  141  142  142 
LCS_GDT     L       6     L       6      5   12  147     3    9   21   34   58   74   97  114  121  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     I       7     I       7      5   12  147     3   13   24   39   64   88  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     G       8     G       8      5   12  147     3   13   24   34   50   81  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     F       9     F       9      7   24  147     4    6   17   32   60   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     D      10     D      10      7   25  147     4    9   21   50   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     L      11     L      11      7   31  147     4   21   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     D      12     D      12      7   31  147     4    6   10   33   61   78   94  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     G      13     G      13      7   31  147     5   17   37   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     T      14     T      14      7   31  147     7   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     L      15     L      15      7   31  147     7   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     V      16     V      16      7   31  147    12   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     N      17     N      17      3   31  147     3    3    3    6   16   38   52   76  101  116  126  132  134  136  138  139  140  141  142  142 
LCS_GDT     R      95     R      95      9   31  147     3   16   33   53   77   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     L      96     L      96     12   31  147     3   14   30   49   67   91  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     Y      97     Y      97     12   31  147     3    5   26   44   67   91  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     P      98     P      98     12   31  147     3   11   26   49   67   91  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     N      99     N      99     12   31  147     3   16   33   53   75   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     V     100     V     100     13   31  147    10   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     K     101     K     101     13   31  147    10   16   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     E     102     E     102     13   31  147    10   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     T     103     T     103     13   31  147    10   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     L     104     L     104     13   31  147    12   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     E     105     E     105     13   31  147    12   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     A     106     A     106     13   31  147    12   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     L     107     L     107     13   31  147    12   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     K     108     K     108     13   31  147    12   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     A     109     A     109     13   31  147    12   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     Q     110     Q     110     13   31  147     3   10   31   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     G     111     G     111     13   31  147     3   23   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     Y     112     Y     112     13   31  147     4   12   31   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     I     113     I     113      6   31  147     3   10   23   42   63   83  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     L     114     L     114      6   31  147     3   14   25   52   75   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     A     115     A     115      6   31  147     3   14   34   55   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     V     116     V     116      6   31  147     5   16   31   50   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     V     117     V     117      6   31  147     3   11   23   34   59   88  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     T     118     T     118      6   31  147     3   14   31   53   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     N     119     N     119      3   22  147     0    9   17   26   48   67   85   98  118  125  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     K     120     K     120      6   18  147     1    3    9   13   21   44   73   85  101  119  126  132  134  136  138  139  140  141  142  142 
LCS_GDT     P     121     P     121     12   18  147     3   13   26   49   65   80   94  113  121  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     T     122     T     122     12   18  147     4   16   29   49   65   88  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     K     123     K     123     12   18  147     4   16   29   50   67   91  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     H     124     H     124     12   18  147     5   21   37   55   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     V     125     V     125     12   18  147     7   18   37   55   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     Q     126     Q     126     12   18  147     7   20   38   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     P     127     P     127     12   18  147     7   24   40   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     I     128     I     128     12   18  147     6   16   37   54   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     L     129     L     129     12   18  147     6   11   26   50   73   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     T     130     T     130     12   18  147     6   12   33   53   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     A     131     A     131     12   18  147     7   23   39   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     F     132     F     132     12   18  147    12   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     G     133     G     133      6   18  147     4   16   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     I     134     I     134      6   18  147     7   22   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     D     135     D     135      4   18  147     4    6   15   34   48   72   94  111  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     H     136     H     136      4   17  147     4    4   12   30   41   59   93  111  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     L     137     L     137      4   29  147     4    4    4   15   48   70   85  107  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     F     138     F     138      4   41  147     4    9   22   41   61   86  102  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     S     139     S     139      4   41  147     3    3   10   31   53   68   92  104  117  125  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     E     140     E     140      4   42  147     4    9   23   52   73   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     M     141     M     141      4   42  147     4   13   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     L     142     L     142      4   42  147     4    4    9   28   61   86  101  113  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     G     143     G     143      4   43  147     4    9   26   55   78   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     G     144     G     144      5   43  147     3    6   30   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     Q     145     Q     145      5   44  147     3    4   13   46   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     S     146     S     146      5   44  147     3   12   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     L     147     L     147      5   44  147    12   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     P     148     P     148      5   44  147     3   19   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     E     149     E     149      5   44  147     4   13   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     I     150     I     150      5   44  147     7   13   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     K     151     K     151      5   44  147     3    5   14   22   36   71   94  110  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     P     152     P     152      4   44  147    12   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     H     153     H     153     12   44  147     3   16   31   48   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     P     154     P     154     12   44  147    11   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     A     155     A     155     12   44  147    11   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     P     156     P     156     12   44  147    11   23   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     F     157     F     157     12   44  147    11   14   45   60   78   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     Y     158     Y     158     12   44  147    11   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     Y     159     Y     159     12   44  147    11   13   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     L     160     L     160     12   44  147    11   13   22   48   72   92  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     C     161     C     161     12   44  147    11   13   22   50   73   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     G     162     G     162     12   44  147    11   13   23   51   78   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     K     163     K     163     12   44  147    11   13   22   44   69   92  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     F     164     F     164     12   44  147    11   13   21   38   64   90  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     G     165     G     165     12   44  147     3    5   15   35   56   80  100  114  121  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     L     166     L     166      8   44  147     3   12   22   35   51   80  104  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     Y     167     Y     167      8   44  147     3    6   20   35   57   85  100  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     P     168     P     168      8   44  147     3    6   18   52   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     K     169     K     169      8   44  147     3    7   20   54   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     Q     170     Q     170     10   44  147     3   12   31   54   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     I     171     I     171     10   44  147     3   15   34   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     L     172     L     172     10   44  147     7   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     F     173     F     173     10   44  147     5   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     V     174     V     174     12   44  147    12   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     G     175     G     175     14   44  147     4   23   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     D     176     D     176     16   44  147    12   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     S     177     S     177     16   44  147    12   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     Q     178     Q     178     16   44  147     6   22   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     N     179     N     179     16   44  147     6   14   34   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     D     180     D     180     16   44  147     9   14   34   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     I     181     I     181     16   44  147     9   21   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     F     182     F     182     16   44  147     9   14   26   52   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     A     183     A     183     16   44  147     9   14   24   35   75   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     A     184     A     184     16   44  147     9   16   34   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     H     185     H     185     16   44  147     9   16   32   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     S     186     S     186     16   44  147     9   13   24   35   55   83  104  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     A     187     A     187     16   44  147     9   14   24   35   73   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     G     188     G     188     16   44  147     9   16   34   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     C     189     C     189     16   43  147     4   13   29   50   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     A     190     A     190     16   43  147     3   13   26   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     V     191     V     191     16   43  147     7   15   37   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     V     192     V     192     16   43  147     3   15   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     G     193     G     193     14   43  147    10   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     L     194     L     194     14   43  147     3   24   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     T     195     T     195      5   31  147     3    4    7   17   26   51   69  104  112  127  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     Y     196     Y     196      5   17  147     3    5   11   23   38   68   98  111  121  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     G     197     G     197      5   17  147     4   10   26   56   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     Y     198     Y     198      5   10  147     4   10   26   55   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     N     199     N     199      5   10  147     3    5   14   32   66   92  102  112  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     Y     200     Y     200      4    7  147     3    3    4    5   10   14   22   34   51   62   80   98  132  135  136  138  140  141  142  142 
LCS_GDT     N     201     N     201      4    7  147     3    3    4    9   13   15   32   44   86  110  125  131  134  136  137  139  140  141  142  142 
LCS_GDT     I     202     I     202      3    7  147     3    4    7    8   14   29   69   97  110  121  130  131  134  136  138  139  140  141  142  142 
LCS_GDT     P     203     P     203      4   11  147     4   14   24   52   78   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     I     204     I     204      5   11  147     4   14   31   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     A     205     A     205      5   11  147     4   12   31   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     Q     206     Q     206      5   11  147     4    9   25   55   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     S     207     S     207      5   11  147     9   15   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     K     208     K     208      5   11  147     4   16   32   49   65   88  105  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     P     209     P     209      5   11  147     4   17   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     D     210     D     210      5   11  147     4   14   45   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     W     211     W     211      5   11  147     4   14   26   53   74   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     I     212     I     212      5   11  147     4   12   35   60   80   93  106  114  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     F     213     F     213      5   11  147     4    6   16   29   53   88  102  111  121  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     D     214     D     214      4    7  147     4    4    5    7    8   27   36   48   71   81  106  120  128  135  136  138  140  141  142  142 
LCS_GDT     D     215     D     215      5   10  147     4    6   12   21   34   53   79   98  112  120  130  131  134  136  138  139  140  141  142  142 
LCS_GDT     F     216     F     216      5   10  147     3    6   18   34   63   87  103  113  122  128  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     A     217     A     217      7   10  147     3    5   22   27   45   58   76   94  112  123  128  132  134  136  138  139  140  141  142  142 
LCS_GDT     D     218     D     218      7   10  147     3    8   19   32   47   74  102  114  121  127  130  132  134  136  138  139  140  141  142  142 
LCS_GDT     I     219     I     219      7   10  147     4    6    8   15   24   34   59   81   98  115  123  128  132  136  137  138  140  140  142  142 
LCS_GDT     L     220     L     220      7   10  147     4    6    8   10   13   22   33   44   60   65   74   87  107  121  125  132  135  137  138  139 
LCS_GDT     K     221     K     221      7   10  147     4    6    8   10   13   13   26   27   30   40   69   78   95  112  126  129  135  135  137  139 
LCS_GDT     I     222     I     222      7   10  147     3    6    8   10   13   13   13   14   23   29   41   44   48   57   76   83   89  120  122  127 
LCS_GDT     T     223     T     223      7   10  147     4    6    8   10   13   13   13   14   15   19   20   24   29   33   64   69   74   79   87   95 
LCS_GDT     Q     224     Q     224      7   10  147     0    3    5    8   12   12   13   13   14   16   16   17   19   30   37   42   49   63   65   68 
LCS_AVERAGE  LCS_A:  41.94  (   6.07   19.75  100.00 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     24     45     60     80     93    106    114    122    128    130    132    134    136    138    139    140    141    142    142 
GDT PERCENT_CA   8.16  16.33  30.61  40.82  54.42  63.27  72.11  77.55  82.99  87.07  88.44  89.80  91.16  92.52  93.88  94.56  95.24  95.92  96.60  96.60
GDT RMS_LOCAL    0.36   0.65   1.07   1.36   1.75   1.96   2.22   2.42   2.58   2.73   2.80   2.87   2.99   3.10   3.21   3.28   3.35   3.47   3.54   3.54
GDT RMS_ALL_CA   5.02   5.08   5.09   5.07   5.02   5.01   4.97   4.94   4.97   4.98   4.97   4.97   5.00   4.96   4.98   4.99   4.98   5.04   5.02   5.02

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          5.886
LGA    T       2      T       2          6.909
LGA    Q       3      Q       3          3.851
LGA    F       4      F       4          1.883
LGA    K       5      K       5          6.206
LGA    L       6      L       6          3.987
LGA    I       7      I       7          2.816
LGA    G       8      G       8          3.247
LGA    F       9      F       9          3.274
LGA    D      10      D      10          2.445
LGA    L      11      L      11          1.077
LGA    D      12      D      12          3.780
LGA    G      13      G      13          1.837
LGA    T      14      T      14          0.889
LGA    L      15      L      15          0.863
LGA    V      16      V      16          0.782
LGA    N      17      N      17          7.281
LGA    R      95      R      95          2.604
LGA    L      96      L      96          3.249
LGA    Y      97      Y      97          3.644
LGA    P      98      P      98          3.290
LGA    N      99      N      99          2.376
LGA    V     100      V     100          1.703
LGA    K     101      K     101          2.094
LGA    E     102      E     102          1.989
LGA    T     103      T     103          1.875
LGA    L     104      L     104          1.755
LGA    E     105      E     105          1.678
LGA    A     106      A     106          1.712
LGA    L     107      L     107          1.761
LGA    K     108      K     108          1.537
LGA    A     109      A     109          1.619
LGA    Q     110      Q     110          3.835
LGA    G     111      G     111          2.754
LGA    Y     112      Y     112          3.634
LGA    I     113      I     113          3.021
LGA    L     114      L     114          2.668
LGA    A     115      A     115          1.697
LGA    V     116      V     116          2.539
LGA    V     117      V     117          3.143
LGA    T     118      T     118          2.022
LGA    N     119      N     119          5.123
LGA    K     120      K     120          6.871
LGA    P     121      P     121          4.030
LGA    T     122      T     122          3.336
LGA    K     123      K     123          3.088
LGA    H     124      H     124          1.755
LGA    V     125      V     125          1.751
LGA    Q     126      Q     126          1.690
LGA    P     127      P     127          1.145
LGA    I     128      I     128          2.331
LGA    L     129      L     129          3.176
LGA    T     130      T     130          2.405
LGA    A     131      A     131          1.893
LGA    F     132      F     132          0.679
LGA    G     133      G     133          1.282
LGA    I     134      I     134          1.054
LGA    D     135      D     135          4.782
LGA    H     136      H     136          4.695
LGA    L     137      L     137          4.463
LGA    F     138      F     138          4.328
LGA    S     139      S     139          6.141
LGA    E     140      E     140          3.157
LGA    M     141      M     141          1.685
LGA    L     142      L     142          4.741
LGA    G     143      G     143          3.480
LGA    G     144      G     144          2.122
LGA    Q     145      Q     145          2.745
LGA    S     146      S     146          3.349
LGA    L     147      L     147          1.756
LGA    P     148      P     148          2.309
LGA    E     149      E     149          3.349
LGA    I     150      I     150          3.204
LGA    K     151      K     151          4.929
LGA    P     152      P     152          1.158
LGA    H     153      H     153          2.575
LGA    P     154      P     154          3.051
LGA    A     155      A     155          3.251
LGA    P     156      P     156          3.197
LGA    F     157      F     157          3.305
LGA    Y     158      Y     158          3.092
LGA    Y     159      Y     159          3.097
LGA    L     160      L     160          3.745
LGA    C     161      C     161          3.440
LGA    G     162      G     162          3.309
LGA    K     163      K     163          3.678
LGA    F     164      F     164          3.532
LGA    G     165      G     165          4.273
LGA    L     166      L     166          3.578
LGA    Y     167      Y     167          4.646
LGA    P     168      P     168          3.070
LGA    K     169      K     169          3.168
LGA    Q     170      Q     170          2.194
LGA    I     171      I     171          1.844
LGA    L     172      L     172          1.731
LGA    F     173      F     173          1.521
LGA    V     174      V     174          0.692
LGA    G     175      G     175          1.261
LGA    D     176      D     176          0.787
LGA    S     177      S     177          0.990
LGA    Q     178      Q     178          0.750
LGA    N     179      N     179          1.594
LGA    D     180      D     180          1.281
LGA    I     181      I     181          0.591
LGA    F     182      F     182          2.454
LGA    A     183      A     183          2.758
LGA    A     184      A     184          1.072
LGA    H     185      H     185          2.335
LGA    S     186      S     186          3.965
LGA    A     187      A     187          2.856
LGA    G     188      G     188          1.146
LGA    C     189      C     189          1.719
LGA    A     190      A     190          2.609
LGA    V     191      V     191          1.496
LGA    V     192      V     192          1.933
LGA    G     193      G     193          1.179
LGA    L     194      L     194          0.770
LGA    T     195      T     195          6.575
LGA    Y     196      Y     196          5.637
LGA    G     197      G     197          3.585
LGA    Y     198      Y     198          3.746
LGA    N     199      N     199          5.094
LGA    Y     200      Y     200         11.659
LGA    N     201      N     201         10.093
LGA    I     202      I     202          8.831
LGA    P     203      P     203          3.306
LGA    I     204      I     204          1.873
LGA    A     205      A     205          2.721
LGA    Q     206      Q     206          3.596
LGA    S     207      S     207          1.507
LGA    K     208      K     208          3.722
LGA    P     209      P     209          2.419
LGA    D     210      D     210          2.657
LGA    W     211      W     211          2.970
LGA    I     212      I     212          2.687
LGA    F     213      F     213          5.967
LGA    D     214      D     214         11.834
LGA    D     215      D     215          8.699
LGA    F     216      F     216          4.706
LGA    A     217      A     217          6.454
LGA    D     218      D     218          3.957
LGA    I     219      I     219          7.206
LGA    L     220      L     220         11.775
LGA    K     221      K     221         13.027
LGA    I     222      I     222         16.748
LGA    T     223      T     223         19.533
LGA    Q     224      Q     224         24.703

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  147  147    4.0    114    2.42    57.313    52.966     4.520

LGA_LOCAL      RMSD =  2.422  Number of atoms =  114  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  4.941  Number of atoms =  147 
Std_ALL_ATOMS  RMSD =  4.918  (standard rmsd on all 147 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.661010 * X  +  -0.750374 * Y  +   0.002195 * Z  +  -9.677199
  Y_new =  -0.090954 * X  +   0.077219 * Y  +  -0.992857 * Z  +  79.458572
  Z_new =   0.744844 * X  +  -0.656488 * Y  +  -0.119292 * Z  +  17.768414 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.750547    1.391045  [ DEG:  -100.2990     79.7010 ]
  Theta =  -0.840302   -2.301291  [ DEG:   -48.1457   -131.8543 ]
  Phi   =  -3.004853    0.136740  [ DEG:  -172.1654      7.8346 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0303TS168_2-D1                               
REMARK     2: T0303_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0303TS168_2-D1.T0303_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  147  147   4.0  114   2.42  52.966     4.92
REMARK  ---------------------------------------------------------- 
MOLECULE T0303TS168_2-D1
PFRMAT TS
TARGET T0303
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1     -19.355  52.104   5.542  1.00 25.00           C
ATOM      2  CA  THR     2     -15.763  52.555   6.687  1.00 25.00           C
ATOM      3  CA  GLN     3     -13.263  55.091   7.920  1.00 25.00           C
ATOM      4  CA  PHE     4     -16.196  57.226   9.025  1.00 25.00           C
ATOM      5  CA  LYS     5     -17.692  60.691   8.227  1.00 25.00           C
ATOM      6  CA  LEU     6     -15.404  61.771  11.106  1.00 25.00           C
ATOM      7  CA  ILE     7     -15.958  65.415  11.894  1.00 25.00           C
ATOM      8  CA  GLY     8     -14.694  68.082  14.311  1.00 25.00           C
ATOM      9  CA  PHE     9     -14.628  70.061  17.549  1.00 25.00           C
ATOM     10  CA  ASP    10     -11.605  72.058  16.319  1.00 25.00           C
ATOM     11  CA  LEU    11     -10.928  75.012  18.513  1.00 25.00           C
ATOM     12  CA  ASP    12      -8.424  77.078  16.630  1.00 25.00           C
ATOM     13  CA  GLY    13     -11.183  79.431  15.537  1.00 25.00           C
ATOM     14  CA  THR    14     -14.408  77.445  15.864  1.00 25.00           C
ATOM     15  CA  LEU    15     -16.053  76.298  19.110  1.00 25.00           C
ATOM     16  CA  VAL    16     -14.974  79.484  20.849  1.00 25.00           C
ATOM     17  CA  ASN    17     -12.829  78.467  23.821  1.00 25.00           C
ATOM     95  CA  ARG    95     -19.608  82.862  25.475  1.00 25.00           C
ATOM     96  CA  LEU    96     -18.768  79.342  24.168  1.00 25.00           C
ATOM     97  CA  TYR    97     -20.659  79.374  20.869  1.00 25.00           C
ATOM     98  CA  PRO    98     -24.236  79.390  19.573  1.00 25.00           C
ATOM     99  CA  ASN    99     -23.709  75.792  18.671  1.00 25.00           C
ATOM    100  CA  VAL   100     -20.434  74.035  17.945  1.00 25.00           C
ATOM    101  CA  LYS   101     -21.324  72.151  21.158  1.00 25.00           C
ATOM    102  CA  GLU   102     -24.513  70.808  19.517  1.00 25.00           C
ATOM    103  CA  THR   103     -22.491  69.660  16.473  1.00 25.00           C
ATOM    104  CA  LEU   104     -19.980  67.905  18.771  1.00 25.00           C
ATOM    105  CA  GLU   105     -22.849  66.164  20.616  1.00 25.00           C
ATOM    106  CA  ALA   106     -24.339  65.026  17.277  1.00 25.00           C
ATOM    107  CA  LEU   107     -20.929  63.664  16.191  1.00 25.00           C
ATOM    108  CA  LYS   108     -20.599  61.777  19.506  1.00 25.00           C
ATOM    109  CA  ALA   109     -24.099  60.296  19.041  1.00 25.00           C
ATOM    110  CA  GLN   110     -22.915  56.731  18.290  1.00 25.00           C
ATOM    111  CA  GLY   111     -19.140  56.251  17.942  1.00 25.00           C
ATOM    112  CA  TYR   112     -16.098  58.508  18.693  1.00 25.00           C
ATOM    113  CA  ILE   113     -16.939  61.139  16.067  1.00 25.00           C
ATOM    114  CA  LEU   114     -13.941  63.426  16.579  1.00 25.00           C
ATOM    115  CA  ALA   115     -11.402  65.972  17.758  1.00 25.00           C
ATOM    116  CA  VAL   116      -8.446  68.376  18.002  1.00 25.00           C
ATOM    117  CA  VAL   117      -6.946  69.993  14.920  1.00 25.00           C
ATOM    118  CA  THR   118      -5.189  72.861  16.733  1.00 25.00           C
ATOM    119  CA  ASN   119      -3.170  70.738  19.235  1.00 25.00           C
ATOM    120  CA  LYS   120      -2.171  71.128  22.921  1.00 25.00           C
ATOM    121  CA  PRO   121      -1.577  73.127  26.114  1.00 25.00           C
ATOM    122  CA  THR   122      -4.295  70.897  27.666  1.00 25.00           C
ATOM    123  CA  LYS   123      -5.132  72.760  30.905  1.00 25.00           C
ATOM    124  CA  HIS   124      -6.936  75.481  28.903  1.00 25.00           C
ATOM    125  CA  VAL   125      -8.928  72.808  27.018  1.00 25.00           C
ATOM    126  CA  GLN   126      -9.888  71.151  30.335  1.00 25.00           C
ATOM    127  CA  PRO   127     -11.018  74.534  31.726  1.00 25.00           C
ATOM    128  CA  ILE   128     -13.121  75.152  28.586  1.00 25.00           C
ATOM    129  CA  LEU   129     -14.717  71.689  28.944  1.00 25.00           C
ATOM    130  CA  THR   130     -15.515  72.410  32.620  1.00 25.00           C
ATOM    131  CA  ALA   131     -17.098  75.757  31.645  1.00 25.00           C
ATOM    132  CA  PHE   132     -18.488  76.522  28.187  1.00 25.00           C
ATOM    133  CA  GLY   133     -20.848  73.569  27.710  1.00 25.00           C
ATOM    134  CA  ILE   134     -19.288  70.418  26.335  1.00 25.00           C
ATOM    135  CA  ASP   135     -18.783  66.804  25.417  1.00 25.00           C
ATOM    136  CA  HIS   136     -15.904  64.452  24.496  1.00 25.00           C
ATOM    137  CA  LEU   137     -15.071  66.624  21.453  1.00 25.00           C
ATOM    138  CA  PHE   138     -15.079  69.756  23.656  1.00 25.00           C
ATOM    139  CA  SER   139     -12.748  68.032  26.159  1.00 25.00           C
ATOM    140  CA  GLU   140     -10.389  67.034  23.313  1.00 25.00           C
ATOM    141  CA  MET   141      -7.356  69.283  22.988  1.00 25.00           C
ATOM    142  CA  LEU   142      -7.267  72.682  21.359  1.00 25.00           C
ATOM    143  CA  GLY   143      -4.536  75.365  21.713  1.00 25.00           C
ATOM    144  CA  GLY   144      -1.032  75.349  20.149  1.00 25.00           C
ATOM    145  CA  GLN   145       2.101  73.967  21.807  1.00 25.00           C
ATOM    146  CA  SER   146       2.897  71.308  24.448  1.00 25.00           C
ATOM    147  CA  LEU   147       3.927  68.843  21.730  1.00 25.00           C
ATOM    148  CA  PRO   148       6.236  70.906  19.570  1.00 25.00           C
ATOM    149  CA  GLU   149       6.540  72.586  16.115  1.00 25.00           C
ATOM    150  CA  ILE   150       3.172  74.335  15.958  1.00 25.00           C
ATOM    151  CA  LYS   151       2.746  76.236  12.687  1.00 25.00           C
ATOM    152  CA  PRO   152       0.858  73.930  10.243  1.00 25.00           C
ATOM    153  CA  HIS   153       2.924  71.338   8.364  1.00 25.00           C
ATOM    154  CA  PRO   154       2.372  68.789  11.110  1.00 25.00           C
ATOM    155  CA  ALA   155       3.575  67.573  14.536  1.00 25.00           C
ATOM    156  CA  PRO   156       0.278  68.705  16.122  1.00 25.00           C
ATOM    157  CA  PHE   157      -1.692  66.854  13.408  1.00 25.00           C
ATOM    158  CA  TYR   158       0.378  63.692  14.029  1.00 25.00           C
ATOM    159  CA  TYR   159      -0.283  63.968  17.791  1.00 25.00           C
ATOM    160  CA  LEU   160      -4.035  64.361  17.127  1.00 25.00           C
ATOM    161  CA  CYS   161      -3.982  61.275  14.859  1.00 25.00           C
ATOM    162  CA  GLY   162      -2.160  59.280  17.574  1.00 25.00           C
ATOM    163  CA  LYS   163      -4.758  60.386  20.162  1.00 25.00           C
ATOM    164  CA  PHE   164      -7.588  59.323  17.812  1.00 25.00           C
ATOM    165  CA  GLY   165      -8.750  55.755  18.341  1.00 25.00           C
ATOM    166  CA  LEU   166     -10.223  55.610  14.850  1.00 25.00           C
ATOM    167  CA  TYR   167      -6.638  55.551  13.647  1.00 25.00           C
ATOM    168  CA  PRO   168      -5.699  58.068  10.941  1.00 25.00           C
ATOM    169  CA  LYS   169      -8.523  57.362   8.451  1.00 25.00           C
ATOM    170  CA  GLN   170     -10.982  59.305  10.652  1.00 25.00           C
ATOM    171  CA  ILE   171     -10.091  62.889  11.438  1.00 25.00           C
ATOM    172  CA  LEU   172     -11.583  65.563   9.100  1.00 25.00           C
ATOM    173  CA  PHE   173     -10.336  68.358  11.336  1.00 25.00           C
ATOM    174  CA  VAL   174     -12.589  71.448  10.969  1.00 25.00           C
ATOM    175  CA  GLY   175     -11.338  74.879  12.172  1.00 25.00           C
ATOM    176  CA  ASP   176     -10.765  78.294  10.678  1.00 25.00           C
ATOM    177  CA  SER   177      -7.440  79.695   9.388  1.00 25.00           C
ATOM    178  CA  GLN   178      -5.272  77.552   7.170  1.00 25.00           C
ATOM    179  CA  ASN   179      -4.351  75.696  10.391  1.00 25.00           C
ATOM    180  CA  ASP   180      -7.383  73.396   9.961  1.00 25.00           C
ATOM    181  CA  ILE   181      -6.363  72.688   6.339  1.00 25.00           C
ATOM    182  CA  PHE   182      -2.798  71.872   7.476  1.00 25.00           C
ATOM    183  CA  ALA   183      -4.169  69.501  10.154  1.00 25.00           C
ATOM    184  CA  ALA   184      -6.370  67.778   7.535  1.00 25.00           C
ATOM    185  CA  HIS   185      -3.347  67.385   5.217  1.00 25.00           C
ATOM    186  CA  SER   186      -1.309  65.882   8.090  1.00 25.00           C
ATOM    187  CA  ALA   187      -3.977  63.281   8.763  1.00 25.00           C
ATOM    188  CA  GLY   188      -5.324  62.645   5.246  1.00 25.00           C
ATOM    189  CA  CYS   189      -9.111  62.596   5.855  1.00 25.00           C
ATOM    190  CA  ALA   190      -9.034  65.396   3.245  1.00 25.00           C
ATOM    191  CA  VAL   191     -11.098  68.173   4.833  1.00 25.00           C
ATOM    192  CA  VAL   192     -12.748  71.582   5.336  1.00 25.00           C
ATOM    193  CA  GLY   193     -12.387  75.125   6.828  1.00 25.00           C
ATOM    194  CA  LEU   194     -15.327  77.498   7.389  1.00 25.00           C
ATOM    195  CA  THR   195     -17.465  75.808  10.069  1.00 25.00           C
ATOM    196  CA  TYR   196     -18.466  78.439  12.626  1.00 25.00           C
ATOM    197  CA  GLY   197     -16.265  81.234  11.280  1.00 25.00           C
ATOM    198  CA  TYR   198     -12.958  83.011  10.900  1.00 25.00           C
ATOM    199  CA  ASN   199     -12.266  83.365   7.222  1.00 25.00           C
ATOM    200  CA  TYR   200     -15.914  82.551   6.287  1.00 25.00           C
ATOM    201  CA  ASN   201     -14.363  81.306   3.093  1.00 25.00           C
ATOM    202  CA  ILE   202     -13.814  81.056  -0.688  1.00 25.00           C
ATOM    203  CA  PRO   203     -10.039  81.459  -0.191  1.00 25.00           C
ATOM    204  CA  ILE   204     -10.070  78.713   2.477  1.00 25.00           C
ATOM    205  CA  ALA   205     -12.006  76.405   0.112  1.00 25.00           C
ATOM    206  CA  GLN   206      -9.475  77.096  -2.676  1.00 25.00           C
ATOM    207  CA  SER   207      -6.225  77.253  -0.713  1.00 25.00           C
ATOM    208  CA  LYS   208      -5.853  73.581   0.267  1.00 25.00           C
ATOM    209  CA  PRO   209      -8.758  71.759   1.751  1.00 25.00           C
ATOM    210  CA  ASP   210     -10.836  69.272  -0.193  1.00 25.00           C
ATOM    211  CA  TRP   211     -13.751  71.603   0.416  1.00 25.00           C
ATOM    212  CA  ILE   212     -16.771  72.982   2.334  1.00 25.00           C
ATOM    213  CA  PHE   213     -19.223  70.624   4.010  1.00 25.00           C
ATOM    214  CA  ASP   214     -22.222  68.313   3.643  1.00 25.00           C
ATOM    215  CA  ASP   215     -23.472  69.533   6.962  1.00 25.00           C
ATOM    216  CA  PHE   216     -21.578  72.597   8.026  1.00 25.00           C
ATOM    217  CA  ALA   217     -23.602  74.760   5.599  1.00 25.00           C
ATOM    218  CA  ASP   218     -25.834  75.945   8.477  1.00 25.00           C
ATOM    219  CA  ILE   219     -22.735  76.818  10.552  1.00 25.00           C
ATOM    220  CA  LEU   220     -21.280  78.778   7.601  1.00 25.00           C
ATOM    221  CA  LYS   221     -24.584  80.672   7.198  1.00 25.00           C
ATOM    222  CA  ILE   222     -24.592  81.502  10.936  1.00 25.00           C
ATOM    223  CA  THR   223     -20.986  82.768  10.687  1.00 25.00           C
ATOM    224  CA  GLN   224     -18.490  85.504   9.749  1.00 25.00           C
TER
END
