
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  112 (  112),  selected  112 , name T0283TS599_4
# Molecule2: number of CA atoms  112 (  888),  selected  112 , name T0283.pdb
# PARAMETERS: T0283TS599_4.T0283.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    90         1 - 90          4.95     8.83
  LCS_AVERAGE:     76.75

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    43         1 - 43          1.83    12.26
  LCS_AVERAGE:     31.78

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    30        47 - 76          0.97     9.72
  LONGEST_CONTINUOUS_SEGMENT:    30        48 - 77          0.94     9.43
  LCS_AVERAGE:     19.40

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  112
LCS_GDT     M       1     M       1      0   43   90     0    2    3    4   10   44   49   52   55   62   70   74   80   84   87   91   95   98  101  103 
LCS_GDT     S       2     S       2      0   43   90     0    4   10   31   39   44   49   52   55   62   70   74   80   84   87   91   95   98  101  103 
LCS_GDT     F       3     F       3     26   43   90    12   25   26   37   43   46   49   52   55   62   70   74   80   84   87   91   95   98  101  103 
LCS_GDT     I       4     I       4     26   43   90    12   25   28   37   43   46   49   52   55   62   70   74   79   84   86   90   95   98  101  103 
LCS_GDT     E       5     E       5     26   43   90    12   25   26   30   43   46   48   52   55   59   67   74   76   81   84   88   93   97  101  103 
LCS_GDT     K       6     K       6     26   43   90    12   25   26   30   43   46   49   52   55   62   70   74   80   84   87   91   95   98  101  103 
LCS_GDT     M       7     M       7     26   43   90    16   25   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     I       8     I       8     26   43   90    12   25   26   30   43   46   49   52   55   62   70   74   80   84   87   91   95   98  101  103 
LCS_GDT     G       9     G       9     26   43   90    12   25   26   30   43   46   49   52   55   62   70   74   80   84   87   91   95   98  101  103 
LCS_GDT     S      10     S      10     26   43   90    15   25   26   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     L      11     L      11     26   43   90    15   25   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     N      12     N      12     26   43   90    15   25   26   34   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     D      13     D      13     26   43   90    15   25   26   36   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     K      14     K      14     26   43   90    15   25   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     R      15     R      15     26   43   90    15   25   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     E      16     E      16     26   43   90    15   25   26   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     W      17     W      17     26   43   90    15   25   26   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     K      18     K      18     26   43   90    16   25   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     A      19     A      19     26   43   90    15   25   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     M      20     M      20     26   43   90    15   25   26   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     E      21     E      21     26   43   90    15   25   27   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     A      22     A      22     26   43   90    15   25   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     R      23     R      23     26   43   90     9   25   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     A      24     A      24     26   43   90    15   25   26   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     K      25     K      25     26   43   90    15   25   26   33   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     A      26     A      26     26   43   90    12   25   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     L      27     L      27     26   43   90    16   25   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     P      28     P      28     26   43   90    16   22   28   37   43   46   49   52   55   62   70   74   80   84   87   91   95   98  101  103 
LCS_GDT     K      29     K      29     26   43   90    16   22   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     E      30     E      30     26   43   90    16   22   28   37   43   46   49   52   55   62   70   74   80   84   87   91   95   98  101  103 
LCS_GDT     Y      31     Y      31     26   43   90    16   22   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     H      32     H      32     26   43   90    16   22   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     H      33     H      33     26   43   90    16   22   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     A      34     A      34     26   43   90    16   22   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     Y      35     Y      35     26   43   90    16   22   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     K      36     K      36     26   43   90    16   22   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     A      37     A      37     26   43   90    16   22   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     I      38     I      38     26   43   90    16   22   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     Q      39     Q      39     26   43   90    16   22   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     K      40     K      40     26   43   90    16   22   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     Y      41     Y      41     26   43   90    16   22   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     M      42     M      42     26   43   90    16   22   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     W      43     W      43     26   43   90    14   22   28   35   42   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     T      44     T      44      5   40   90     3    4    6   17   18   30   38   46   51   60   68   73   79   82   86   89   95   97  100  103 
LCS_GDT     S      45     S      45      5   40   90     3    4   16   28   36   38   42   47   55   60   68   73   79   82   86   91   95   98  101  103 
LCS_GDT     G      46     G      46      5   40   90     3    4    6   25   32   33   39   45   51   60   67   73   77   81   86   89   95   98  100  103 
LCS_GDT     G      47     G      47     30   40   90     3   15   22   30   32   37   40   46   55   60   68   75   79   84   86   91   95   98  101  103 
LCS_GDT     P      48     P      48     30   40   90     4   21   28   31   36   38   42   47   55   60   68   75   80   84   87   91   95   98  101  103 
LCS_GDT     T      49     T      49     30   40   90     8   23   28   31   36   38   42   47   55   60   68   75   79   84   86   91   95   98  101  103 
LCS_GDT     D      50     D      50     30   40   90     4   10   28   31   36   38   42   47   55   60   68   75   79   84   86   91   95   98  101  103 
LCS_GDT     W      51     W      51     30   40   90     7   23   28   31   36   38   43   48   55   60   68   75   80   84   87   91   95   98  101  103 
LCS_GDT     Q      52     Q      52     30   40   90    12   23   28   31   36   38   43   48   55   60   68   75   80   84   87   91   95   98  101  103 
LCS_GDT     D      53     D      53     30   40   90    11   23   28   31   38   41   46   50   55   60   68   75   80   84   87   91   95   98  101  103 
LCS_GDT     T      54     T      54     30   40   90     6   20   28   34   41   44   48   51   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     K      55     K      55     30   40   90    12   20   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     R      56     R      56     30   40   90     9   23   28   37   42   46   49   52   55   61   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     I      57     I      57     30   40   90    11   23   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     F      58     F      58     30   40   90    11   23   28   37   43   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     G      59     G      59     30   40   90    12   23   28   31   39   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     G      60     G      60     30   40   90    12   23   28   31   39   46   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     I      61     I      61     30   40   90    11   23   28   31   36   41   49   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     L      62     L      62     30   40   90    12   23   28   31   36   38   46   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     D      63     D      63     30   40   90    12   23   28   31   36   38   42   50   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     L      64     L      64     30   40   90    12   23   28   31   36   38   42   50   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     F      65     F      65     30   40   90    12   23   28   31   36   38   42   48   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     E      66     E      66     30   40   90    12   23   28   31   36   38   42   47   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     E      67     E      67     30   40   90    12   23   28   31   36   38   42   47   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     G      68     G      68     30   40   90    12   23   28   31   36   38   42   47   55   61   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     A      69     A      69     30   40   90    12   23   28   31   36   38   42   47   55   61   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     A      70     A      70     30   40   90    12   23   28   31   36   38   42   47   55   60   68   75   80   84   87   91   95   98  101  103 
LCS_GDT     E      71     E      71     30   40   90    12   23   28   31   36   38   42   47   54   60   68   75   80   84   87   91   95   98  101  103 
LCS_GDT     G      72     G      72     30   40   90    12   23   28   31   36   38   42   47   54   60   68   75   80   84   87   91   95   98  101  103 
LCS_GDT     K      73     K      73     30   40   90    11   23   28   31   36   38   42   47   55   60   68   75   80   84   87   91   95   98  101  103 
LCS_GDT     K      74     K      74     30   40   90     6   21   28   31   36   38   42   47   55   61   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     V      75     V      75     30   40   90     6   15   28   31   36   38   42   47   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     T      76     T      76     30   40   90     6   23   28   31   36   38   42   47   55   61   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     D      77     D      77     30   40   90     6   17   26   31   36   38   42   47   55   60   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     L      78     L      78     25   40   90     6    8   13   24   36   38   42   47   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     T      79     T      79     10   40   90     6    8   17   28   35   38   42   47   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     G      80     G      80     10   40   90     6   11   22   28   35   38   42   47   55   61   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     E      81     E      81     10   40   90     6    7   25   29   34   37   40   46   52   60   67   75   80   84   87   91   95   98  101  103 
LCS_GDT     D      82     D      82     11   40   90     9   11   22   29   33   37   40   46   52   60   66   75   80   84   87   91   95   98  101  103 
LCS_GDT     V      83     V      83     11   40   90    10   11   16   29   33   37   40   46   52   60   68   75   80   84   87   91   95   98  101  103 
LCS_GDT     A      84     A      84     11   39   90    10   11   11   12   25   38   46   52   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     A      85     A      85     11   39   90    10   11   15   22   30   38   42   47   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     F      86     F      86     11   15   90    10   11   11   12   13   18   40   47   50   59   68   75   80   84   87   91   95   98  101  103 
LCS_GDT     C      87     C      87     11   15   90    10   11   15   22   30   38   42   50   55   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     D      88     D      88     11   15   90    10   11   11   12   21   26   35   45   50   58   70   74   79   82   87   91   95   98  101  103 
LCS_GDT     E      89     E      89     11   15   90    10   11   11   12   13   16   23   32   40   52   65   72   77   82   87   91   95   98  101  103 
LCS_GDT     L      90     L      90     11   15   90    10   11   11   12   13   16   23   29   40   52   66   73   78   82   87   91   95   98  101  103 
LCS_GDT     M      91     M      91     11   15   88    10   11   11   12   16   26   35   42   49   55   66   73   78   82   87   91   95   98  101  103 
LCS_GDT     K      92     K      92     11   15   86    10   11   11   12   13   18   23   25   30   45   49   68   72   76   81   88   94   98  101  103 
LCS_GDT     D      93     D      93      5   15   83     4    4    8   12   13   18   23   25   30   45   61   68   73   76   81   88   94   98  101  103 
LCS_GDT     T      94     T      94      5   15   82     4    4    8   12   13   18   24   39   47   53   66   71   77   82   87   90   95   98  101  103 
LCS_GDT     K      95     K      95      5   18   76     3    4    8   10   13   18   33   38   47   53   62   68   73   78   84   88   94   98  101  103 
LCS_GDT     T      96     T      96     15   18   76    14   15   16   17   18   18   24   38   48   55   67   73   78   82   87   91   95   98  101  103 
LCS_GDT     W      97     W      97     15   18   76    14   15   16   17   25   30   36   44   53   62   70   75   80   84   87   91   95   98  101  103 
LCS_GDT     M      98     M      98     15   18   76    14   15   16   17   30   33   39   47   50   56   63   70   77   82   87   91   95   98  101  103 
LCS_GDT     D      99     D      99     15   18   76    14   15   16   17   18   18   23   28   40   52   59   65   73   78   85   88   94   98  101  103 
LCS_GDT     K     100     K     100     15   18   76    14   15   16   17   18   25   33   41   50   58   67   74   78   82   87   91   95   98  101  103 
LCS_GDT     Y     101     Y     101     15   18   76    14   15   19   27   30   36   41   47   50   56   63   70   75   82   86   91   95   98  101  103 
LCS_GDT     R     102     R     102     15   18   76    14   15   16   17   18   18   29   39   44   49   55   59   67   72   80   87   90   95   97  100 
LCS_GDT     T     103     T     103     15   18   76    14   15   16   17   18   18   28   36   44   48   59   65   73   76   83   87   90   98  101  103 
LCS_GDT     K     104     K     104     15   18   76    14   15   16   17   26   36   39   47   50   56   63   70   75   82   86   90   95   98  101  103 
LCS_GDT     L     105     L     105     15   18   76    14   15   16   17   18   18   20   22   37   49   55   59   65   69   77   84   88   92   95   98 
LCS_GDT     N     106     N     106     15   18   62    14   15   16   17   18   18   20   22   29   40   54   59   62   65   71   77   85   89   93   96 
LCS_GDT     D     107     D     107     15   18   62    14   15   16   17   18   24   34   41   45   49   55   63   69   75   83   87   90   95   98  102 
LCS_GDT     S     108     S     108     15   18   62    14   15   16   17   18   18   35   41   45   49   55   60   67   72   80   87   89   92   96   98 
LCS_GDT     I     109     I     109     15   18   59    14   15   16   17   18   18   20   22   24   29   31   35   56   62   70   74   77   84   90   93 
LCS_GDT     G     110     G     110     15   18   36    14   15   16   17   18   18   20   22   24   37   48   54   61   65   70   77   80   84   90   95 
LCS_GDT     R     111     R     111      3   18   36     2    3    3    4    4   12   20   21   21   28   34   37   56   62   68   72   77   83   87   92 
LCS_GDT     D     112     D     112      3   18   36     2    3    3   17   18   18   20   22   24   26   29   32   34   35   37   39   42   55   59   64 
LCS_AVERAGE  LCS_A:  42.64  (  19.40   31.78   76.75 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     16     25     28     37     43     46     49     52     55     62     70     75     80     84     87     91     95     98    101    103 
GDT PERCENT_CA  14.29  22.32  25.00  33.04  38.39  41.07  43.75  46.43  49.11  55.36  62.50  66.96  71.43  75.00  77.68  81.25  84.82  87.50  90.18  91.96
GDT RMS_LOCAL    0.29   0.58   0.84   1.28   1.65   1.73   1.96   2.22   2.49   3.35   3.78   4.13   4.32   4.51   4.73   4.96   5.15   5.44   5.59   5.69
GDT RMS_ALL_CA  12.40  13.05   9.44  12.24  12.36  12.42  11.90  11.65  11.37   9.91   9.34   8.79   8.99   9.10   8.25   8.07   8.03   7.76   7.82   7.79

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          3.372
LGA    S       2      S       2          3.404
LGA    F       3      F       3          1.088
LGA    I       4      I       4          2.184
LGA    E       5      E       5          3.735
LGA    K       6      K       6          2.675
LGA    M       7      M       7          0.724
LGA    I       8      I       8          2.729
LGA    G       9      G       9          3.266
LGA    S      10      S      10          1.814
LGA    L      11      L      11          0.842
LGA    N      12      N      12          2.012
LGA    D      13      D      13          2.181
LGA    K      14      K      14          1.267
LGA    R      15      R      15          0.552
LGA    E      16      E      16          1.577
LGA    W      17      W      17          1.885
LGA    K      18      K      18          1.298
LGA    A      19      A      19          0.198
LGA    M      20      M      20          1.767
LGA    E      21      E      21          2.566
LGA    A      22      A      22          1.932
LGA    R      23      R      23          1.476
LGA    A      24      A      24          3.124
LGA    K      25      K      25          3.369
LGA    A      26      A      26          2.153
LGA    L      27      L      27          2.379
LGA    P      28      P      28          2.220
LGA    K      29      K      29          1.549
LGA    E      30      E      30          1.623
LGA    Y      31      Y      31          1.701
LGA    H      32      H      32          0.910
LGA    H      33      H      33          0.503
LGA    A      34      A      34          1.260
LGA    Y      35      Y      35          1.433
LGA    K      36      K      36          1.135
LGA    A      37      A      37          1.822
LGA    I      38      I      38          2.441
LGA    Q      39      Q      39          2.424
LGA    K      40      K      40          2.605
LGA    Y      41      Y      41          2.893
LGA    M      42      M      42          3.203
LGA    W      43      W      43          3.754
LGA    T      44      T      44          8.824
LGA    S      45      S      45          9.909
LGA    G      46      G      46         12.035
LGA    G      47      G      47          9.641
LGA    P      48      P      48          8.043
LGA    T      49      T      49          9.749
LGA    D      50      D      50          9.462
LGA    W      51      W      51          6.632
LGA    Q      52      Q      52          7.197
LGA    D      53      D      53          6.416
LGA    T      54      T      54          4.362
LGA    K      55      K      55          2.983
LGA    R      56      R      56          3.679
LGA    I      57      I      57          2.794
LGA    F      58      F      58          1.460
LGA    G      59      G      59          2.331
LGA    G      60      G      60          1.754
LGA    I      61      I      61          2.878
LGA    L      62      L      62          3.842
LGA    D      63      D      63          4.624
LGA    L      64      L      64          5.087
LGA    F      65      F      65          5.926
LGA    E      66      E      66          7.049
LGA    E      67      E      67          8.143
LGA    G      68      G      68          8.723
LGA    A      69      A      69          8.904
LGA    A      70      A      70         10.648
LGA    E      71      E      71         11.797
LGA    G      72      G      72         11.957
LGA    K      73      K      73         11.237
LGA    K      74      K      74          9.562
LGA    V      75      V      75          7.806
LGA    T      76      T      76          9.225
LGA    D      77      D      77         10.832
LGA    L      78      L      78          8.219
LGA    T      79      T      79          6.890
LGA    G      80      G      80          8.707
LGA    E      81      E      81         11.579
LGA    D      82      D      82         10.805
LGA    V      83      V      83          8.924
LGA    A      84      A      84          3.970
LGA    A      85      A      85          7.890
LGA    F      86      F      86         10.176
LGA    C      87      C      87          5.732
LGA    D      88      D      88          8.632
LGA    E      89      E      89         13.088
LGA    L      90      L      90         11.277
LGA    M      91      M      91         10.291
LGA    K      92      K      92         15.146
LGA    D      93      D      93         14.683
LGA    T      94      T      94         11.409
LGA    K      95      K      95         12.676
LGA    T      96      T      96         10.696
LGA    W      97      W      97          7.142
LGA    M      98      M      98         13.094
LGA    D      99      D      99         15.997
LGA    K     100      K     100         11.839
LGA    Y     101      Y     101         14.674
LGA    R     102      R     102         20.775
LGA    T     103      T     103         19.414
LGA    K     104      K     104         16.762
LGA    L     105      L     105         23.506
LGA    N     106      N     106         26.919
LGA    D     107      D     107         23.288
LGA    S     108      S     108         24.514
LGA    I     109      I     109         31.297
LGA    G     110      G     110         31.826
LGA    R     111      R     111         34.792
LGA    D     112      D     112         38.252

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  112  112    4.0     52    2.22    45.759    43.063     2.241

LGA_LOCAL      RMSD =  2.221  Number of atoms =   52  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 10.938  Number of atoms =  112 
Std_ALL_ATOMS  RMSD =  7.192  (standard rmsd on all 112 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.677715 * X  +   0.682122 * Y  +  -0.274611 * Z  +  23.112194
  Y_new =  -0.681749 * X  +   0.722815 * Y  +   0.112947 * Z  +  24.957251
  Z_new =   0.275536 * X  +   0.110670 * Y  +   0.954899 * Z  +   4.027484 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.115382   -3.026211  [ DEG:     6.6109   -173.3891 ]
  Theta =  -0.279147   -2.862445  [ DEG:   -15.9940   -164.0060 ]
  Phi   =  -0.788365    2.353227  [ DEG:   -45.1700    134.8300 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0283TS599_4                                  
REMARK     2: T0283.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0283TS599_4.T0283.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  112  112   4.0   52   2.22  43.063     7.19
REMARK  ---------------------------------------------------------- 
MOLECULE T0283TS599_4
PFRMAT TS                                                                       
TARGET T0283                                                                    
MODEL  4                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      24.615   6.053  19.956  1.00  0.00              
ATOM      2  CA  SER     2      28.061   7.059  19.773  1.00  0.00              
ATOM      3  CA  PHE     3      31.140   8.893  19.955  1.00  0.00              
ATOM      4  CA  ILE     4      27.421   7.981  18.650  1.00  0.00              
ATOM      5  CA  GLU     5      26.602  11.684  18.383  1.00  0.00              
ATOM      6  CA  LYS     6      29.782  12.257  16.459  1.00  0.00              
ATOM      7  CA  MET     7      29.032   9.389  14.084  1.00  0.00              
ATOM      8  CA  ILE     8      25.449  10.579  13.402  1.00  0.00              
ATOM      9  CA  GLY     9      26.622  14.069  12.677  1.00  0.00              
ATOM     10  CA  SER    10      29.263  12.926  10.261  1.00  0.00              
ATOM     11  CA  LEU    11      26.921  10.629   8.366  1.00  0.00              
ATOM     12  CA  ASN    12      23.947  12.865   7.853  1.00  0.00              
ATOM     13  CA  ASP    13      26.063  15.789   6.776  1.00  0.00              
ATOM     14  CA  LYS    14      27.895  13.615   4.269  1.00  0.00              
ATOM     15  CA  ARG    15      24.698  12.217   2.761  1.00  0.00              
ATOM     16  CA  GLU    16      23.146  15.699   2.361  1.00  0.00              
ATOM     17  CA  TRP    17      26.286  16.981   0.719  1.00  0.00              
ATOM     18  CA  LYS    18      26.250  13.993  -1.666  1.00  0.00              
ATOM     19  CA  ALA    19      22.633  14.705  -2.616  1.00  0.00              
ATOM     20  CA  MET    20      23.402  18.387  -3.289  1.00  0.00              
ATOM     21  CA  GLU    21      26.353  17.314  -5.463  1.00  0.00              
ATOM     22  CA  ALA    22      24.219  14.875  -7.425  1.00  0.00              
ATOM     23  CA  ARG    23      21.651  17.592  -8.113  1.00  0.00              
ATOM     24  CA  ALA    24      24.470  19.886  -9.197  1.00  0.00              
ATOM     25  CA  LYS    25      26.050  17.392 -11.544  1.00  0.00              
ATOM     26  CA  ALA    26      22.674  16.995 -13.320  1.00  0.00              
ATOM     27  CA  LEU    27      22.077  20.668 -13.732  1.00  0.00              
ATOM     28  CA  PRO    28      23.109  22.991 -16.398  1.00  0.00              
ATOM     29  CA  LYS    29      25.911  25.298 -15.429  1.00  0.00              
ATOM     30  CA  GLU    30      23.641  28.356 -15.110  1.00  0.00              
ATOM     31  CA  TYR    31      21.581  26.577 -12.456  1.00  0.00              
ATOM     32  CA  HIS    32      24.636  25.286 -10.549  1.00  0.00              
ATOM     33  CA  HIS    33      26.055  28.802 -10.026  1.00  0.00              
ATOM     34  CA  ALA    34      22.696  30.048  -8.773  1.00  0.00              
ATOM     35  CA  TYR    35      22.428  27.059  -6.358  1.00  0.00              
ATOM     36  CA  LYS    36      25.899  27.713  -5.016  1.00  0.00              
ATOM     37  CA  ALA    37      25.041  31.413  -4.407  1.00  0.00              
ATOM     38  CA  ILE    38      21.797  30.448  -2.586  1.00  0.00              
ATOM     39  CA  GLN    39      23.709  27.936  -0.428  1.00  0.00              
ATOM     40  CA  LYS    40      26.348  30.574   0.411  1.00  0.00              
ATOM     41  CA  TYR    41      23.618  33.110   1.315  1.00  0.00              
ATOM     42  CA  MET    42      21.776  30.505   3.501  1.00  0.00              
ATOM     43  CA  TRP    43      24.670  29.093   5.453  1.00  0.00              
ATOM     44  CA  THR    44      23.184  26.942   8.118  1.00  0.00              
ATOM     45  CA  SER    45      25.580  25.518  10.745  1.00  0.00              
ATOM     46  CA  GLY    46      23.255  25.414  13.728  1.00  0.00              
ATOM     47  CA  GLY    47      20.035  24.302  12.150  1.00  0.00              
ATOM     48  CA  PRO    48      19.840  21.304   9.790  1.00  0.00              
ATOM     49  CA  THR    49      19.787  18.489  12.274  1.00  0.00              
ATOM     50  CA  ASP    50      17.525  15.939  10.718  1.00  0.00              
ATOM     51  CA  TRP    51      18.784  15.946   7.095  1.00  0.00              
ATOM     52  CA  GLN    52      15.304  15.965   5.694  1.00  0.00              
ATOM     53  CA  ASP    53      14.408  19.204   7.481  1.00  0.00              
ATOM     54  CA  THR    54      17.579  21.000   6.263  1.00  0.00              
ATOM     55  CA  LYS    55      17.183  19.843   2.699  1.00  0.00              
ATOM     56  CA  ARG    56      13.504  20.896   2.491  1.00  0.00              
ATOM     57  CA  ILE    57      14.460  24.384   3.621  1.00  0.00              
ATOM     58  CA  PHE    58      17.265  24.650   1.048  1.00  0.00              
ATOM     59  CA  GLY    59      15.002  23.405  -1.673  1.00  0.00              
ATOM     60  CA  GLY    60      12.381  26.093  -0.879  1.00  0.00              
ATOM     61  CA  ILE    61      15.138  28.752  -0.980  1.00  0.00              
ATOM     62  CA  LEU    62      16.309  27.366  -4.344  1.00  0.00              
ATOM     63  CA  ASP    63      12.755  27.510  -5.700  1.00  0.00              
ATOM     64  CA  LEU    64      12.667  31.224  -4.861  1.00  0.00              
ATOM     65  CA  PHE    65      15.896  31.687  -6.682  1.00  0.00              
ATOM     66  CA  GLU    66      14.530  29.873  -9.781  1.00  0.00              
ATOM     67  CA  GLU    67      11.532  32.207  -9.792  1.00  0.00              
ATOM     68  CA  GLY    68      13.792  35.279  -9.467  1.00  0.00              
ATOM     69  CA  ALA    69      16.004  34.043 -12.370  1.00  0.00              
ATOM     70  CA  ALA    70      12.832  33.703 -14.419  1.00  0.00              
ATOM     71  CA  GLU    71      11.752  37.300 -13.617  1.00  0.00              
ATOM     72  CA  GLY    72      15.175  38.718 -14.472  1.00  0.00              
ATOM     73  CA  LYS    73      16.096  40.012 -11.095  1.00  0.00              
ATOM     74  CA  LYS    74      18.977  38.980  -8.908  1.00  0.00              
ATOM     75  CA  VAL    75      17.946  37.127  -5.659  1.00  0.00              
ATOM     76  CA  THR    76      19.180  39.927  -3.415  1.00  0.00              
ATOM     77  CA  ASP    77      17.279  42.499  -5.554  1.00  0.00              
ATOM     78  CA  LEU    78      14.029  40.498  -5.563  1.00  0.00              
ATOM     79  CA  THR    79      13.976  40.021  -1.821  1.00  0.00              
ATOM     80  CA  GLY    80      15.000  43.597  -1.073  1.00  0.00              
ATOM     81  CA  GLU    81      17.353  44.712   1.628  1.00  0.00              
ATOM     82  CA  ASP    82      15.810  43.418   4.885  1.00  0.00              
ATOM     83  CA  VAL    83      16.011  39.788   3.651  1.00  0.00              
ATOM     84  CA  ALA    84      19.644  40.272   2.599  1.00  0.00              
ATOM     85  CA  ALA    85      20.636  41.653   6.017  1.00  0.00              
ATOM     86  CA  PHE    86      18.920  38.682   7.668  1.00  0.00              
ATOM     87  CA  CYS    87      20.778  36.226   5.387  1.00  0.00              
ATOM     88  CA  ASP    88      24.126  37.864   6.223  1.00  0.00              
ATOM     89  CA  GLU    89      23.341  37.652   9.978  1.00  0.00              
ATOM     90  CA  LEU    90      22.352  34.028   9.818  1.00  0.00              
ATOM     91  CA  MET    91      25.461  33.046   7.943  1.00  0.00              
ATOM     92  CA  LYS    92      27.810  34.806  10.382  1.00  0.00              
ATOM     93  CA  ASP    93      26.100  33.210  13.400  1.00  0.00              
ATOM     94  CA  THR    94      26.239  29.733  11.967  1.00  0.00              
ATOM     95  CA  LYS    95      30.028  29.564  11.694  1.00  0.00              
ATOM     96  CA  THR    96      30.564  30.498  15.375  1.00  0.00              
ATOM     97  CA  TRP    97      28.052  27.919  16.511  1.00  0.00              
ATOM     98  CA  MET    98      29.722  25.210  14.341  1.00  0.00              
ATOM     99  CA  ASP    99      33.132  25.992  15.906  1.00  0.00              
ATOM    100  CA  LYS   100      31.520  25.751  19.387  1.00  0.00              
ATOM    101  CA  TYR   101      29.907  22.410  18.547  1.00  0.00              
ATOM    102  CA  ARG   102      33.201  21.034  17.219  1.00  0.00              
ATOM    103  CA  THR   103      34.826  22.011  20.510  1.00  0.00              
ATOM    104  CA  LYS   104      32.089  20.426  22.606  1.00  0.00              
ATOM    105  CA  LEU   105      32.322  17.135  20.631  1.00  0.00              
ATOM    106  CA  ASN   106      36.112  17.129  20.922  1.00  0.00              
ATOM    107  CA  ASP   107      35.854  17.587  24.649  1.00  0.00              
ATOM    108  CA  SER   108      33.350  14.707  25.049  1.00  0.00              
ATOM    109  CA  ILE   109      35.520  12.447  22.956  1.00  0.00              
ATOM    110  CA  GLY   110      38.828  13.408  25.163  1.00  0.00              
ATOM    111  CA  ARG   111      36.836  12.229  27.916  1.00  0.00              
ATOM    112  CA  ASP   112      36.550   9.350  24.871  1.00  0.00              
TER                                                                             
END
