
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  112 (  112),  selected  112 , name T0283TS599_2
# Molecule2: number of CA atoms  112 (  888),  selected  112 , name T0283.pdb
# PARAMETERS: T0283TS599_2.T0283.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    79        32 - 110         4.95     9.16
  LONGEST_CONTINUOUS_SEGMENT:    79        33 - 111         4.98     9.39
  LCS_AVERAGE:     67.04

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    44         1 - 44          1.73    11.96
  LCS_AVERAGE:     31.70

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38         6 - 43          1.00    12.31
  LCS_AVERAGE:     22.69

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  112
LCS_GDT     M       1     M       1      0   44   65     4    4   13   30   38   41   45   46   48   50   54   58   66   73   82   89   95  101  102  103 
LCS_GDT     S       2     S       2      0   44   65     0    8   20   31   36   41   45   46   48   50   54   58   66   73   82   89   95  101  102  103 
LCS_GDT     F       3     F       3     28   44   65    15   24   37   41   41   41   45   46   48   50   54   58   65   73   81   86   94  101  102  103 
LCS_GDT     I       4     I       4     28   44   65    15   24   38   41   41   41   45   46   48   50   54   58   65   73   81   86   94  101  102  103 
LCS_GDT     E       5     E       5     28   44   65    15   24   38   41   41   41   45   46   48   50   54   58   65   72   79   86   94  101  102  103 
LCS_GDT     K       6     K       6     38   44   65    15   24   37   41   41   41   45   46   48   50   54   58   66   73   81   88   95  101  102  103 
LCS_GDT     M       7     M       7     38   44   65    15   24   38   41   41   41   45   46   48   50   54   58   66   73   82   89   95  101  102  103 
LCS_GDT     I       8     I       8     38   44   65    15   24   38   41   41   41   45   46   48   50   54   58   66   73   81   88   95  101  102  103 
LCS_GDT     G       9     G       9     38   44   65    15   24   38   41   41   41   45   46   48   50   54   58   66   73   82   89   95  101  102  103 
LCS_GDT     S      10     S      10     38   44   65    15   25   38   41   41   41   45   46   48   50   54   58   66   73   82   89   95  101  102  103 
LCS_GDT     L      11     L      11     38   44   65    15   24   38   41   41   41   45   46   48   50   54   58   66   73   82   89   95  101  102  103 
LCS_GDT     N      12     N      12     38   44   65    15   24   38   41   41   41   45   46   48   50   54   58   66   73   82   89   95  101  102  103 
LCS_GDT     D      13     D      13     38   44   65    15   25   38   41   41   41   45   46   48   50   54   58   66   74   82   89   95  101  102  103 
LCS_GDT     K      14     K      14     38   44   65    15   25   38   41   41   41   45   46   48   50   54   58   66   74   82   89   95  101  102  103 
LCS_GDT     R      15     R      15     38   44   65    15   24   38   41   41   41   45   46   48   50   54   58   66   74   82   89   95  101  102  103 
LCS_GDT     E      16     E      16     38   44   65    15   25   38   41   41   41   45   46   48   50   54   58   66   74   82   89   95  101  102  103 
LCS_GDT     W      17     W      17     38   44   65    15   25   38   41   41   41   45   46   48   50   54   59   66   74   82   89   95  101  102  103 
LCS_GDT     K      18     K      18     38   44   65    14   25   38   41   41   41   45   46   48   50   54   58   66   74   82   89   95  101  102  103 
LCS_GDT     A      19     A      19     38   44   65    14   25   38   41   41   41   45   46   48   50   54   58   66   74   82   89   95  101  102  103 
LCS_GDT     M      20     M      20     38   44   65    15   25   38   41   41   41   45   46   48   50   54   59   66   74   82   89   95  101  102  103 
LCS_GDT     E      21     E      21     38   44   67    15   25   38   41   41   41   45   46   48   50   54   59   66   74   82   89   95  101  102  103 
LCS_GDT     A      22     A      22     38   44   67    13   25   38   41   41   41   45   46   48   50   54   58   66   74   82   89   95  101  102  103 
LCS_GDT     R      23     R      23     38   44   67    13   25   38   41   41   41   45   46   48   50   54   58   66   74   82   89   95  101  102  103 
LCS_GDT     A      24     A      24     38   44   67    15   24   38   41   41   41   45   46   48   50   54   58   66   74   82   89   95  101  102  103 
LCS_GDT     K      25     K      25     38   44   67     7   24   38   41   41   41   45   46   48   50   54   58   66   74   82   89   95  101  102  103 
LCS_GDT     A      26     A      26     38   44   67    12   25   38   41   41   41   45   46   48   50   54   57   65   73   82   89   95  101  102  103 
LCS_GDT     L      27     L      27     38   44   67    15   25   38   41   41   41   45   46   48   50   54   57   65   73   82   89   95  101  102  103 
LCS_GDT     P      28     P      28     38   44   67    15   25   38   41   41   41   45   46   48   50   54   58   66   73   82   89   95  101  102  103 
LCS_GDT     K      29     K      29     38   44   67    15   25   38   41   41   41   45   46   48   50   54   58   66   74   82   89   95  101  102  103 
LCS_GDT     E      30     E      30     38   44   75    11   24   38   41   41   41   45   46   48   50   54   58   66   74   82   89   95  101  102  103 
LCS_GDT     Y      31     Y      31     38   44   78    15   25   38   41   41   41   45   46   48   50   54   58   66   74   82   89   95  101  102  103 
LCS_GDT     H      32     H      32     38   44   79    15   25   38   41   41   41   45   46   48   53   57   60   66   74   82   89   95  101  102  103 
LCS_GDT     H      33     H      33     38   44   79    15   24   38   41   41   41   45   46   50   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     A      34     A      34     38   44   79    15   25   38   41   41   41   45   46   50   53   57   63   68   74   82   89   95  101  102  103 
LCS_GDT     Y      35     Y      35     38   44   79    15   25   38   41   41   41   45   46   50   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     K      36     K      36     38   44   79    15   24   38   41   41   41   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     A      37     A      37     38   44   79    15   25   38   41   41   41   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     I      38     I      38     38   44   79    15   25   38   41   41   41   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     Q      39     Q      39     38   44   79    15   25   38   41   41   41   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     K      40     K      40     38   44   79    15   25   38   41   41   41   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     Y      41     Y      41     38   44   79    15   25   38   41   41   41   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     M      42     M      42     38   44   79    15   25   38   41   41   41   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     W      43     W      43     38   44   79    12   25   38   41   41   41   45   49   51   53   57   62   68   74   82   89   95  101  102  103 
LCS_GDT     T      44     T      44      4   44   79     3    3   14   31   36   40   45   49   51   53   57   63   68   74   82   89   95  101  102  103 
LCS_GDT     S      45     S      45      4    8   79     3   13   25   31   36   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     G      46     G      46      5    8   79     3    4    5    6    9   10   14   21   30   40   47   51   63   68   74   84   90   98   99  102 
LCS_GDT     G      47     G      47      5   35   79     3    4    5    6    7   13   17   27   37   50   55   61   67   72   80   87   95  101  102  103 
LCS_GDT     P      48     P      48      5   39   79     3    4    5    7   30   37   43   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     T      49     T      49     30   39   79    14   25   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     D      50     D      50     30   39   79    10   20   31   34   39   40   45   49   51   53   58   63   68   74   81   89   95  101  102  103 
LCS_GDT     W      51     W      51     30   39   79    11   25   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     Q      52     Q      52     30   39   79    14   25   31   34   39   40   45   49   51   53   58   63   68   73   80   87   94   99  102  103 
LCS_GDT     D      53     D      53     30   39   79    14   25   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     T      54     T      54     30   39   79    11   25   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     K      55     K      55     30   39   79    10   25   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     R      56     R      56     30   39   79    13   25   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     I      57     I      57     30   39   79    14   25   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     F      58     F      58     30   39   79    14   25   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     G      59     G      59     30   39   79    14   25   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     G      60     G      60     30   39   79    14   25   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     I      61     I      61     30   39   79    14   25   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     L      62     L      62     30   39   79    14   25   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     D      63     D      63     30   39   79    14   25   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     L      64     L      64     30   39   79    14   25   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     F      65     F      65     30   39   79    14   25   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     E      66     E      66     30   39   79    14   25   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     E      67     E      67     30   39   79    14   25   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     G      68     G      68     30   39   79    14   25   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     A      69     A      69     30   39   79    14   25   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     A      70     A      70     30   39   79    14   25   31   34   39   40   45   49   51   53   58   63   68   73   80   89   95  101  102  103 
LCS_GDT     E      71     E      71     30   39   79    14   25   31   34   39   40   45   49   51   53   58   63   68   74   81   89   95  101  102  103 
LCS_GDT     G      72     G      72     30   39   79    14   25   31   34   39   40   45   49   51   53   58   63   68   73   80   89   95  101  102  103 
LCS_GDT     K      73     K      73     30   39   79    11   25   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     K      74     K      74     30   39   79     5   19   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     V      75     V      75     30   39   79     5    8   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     T      76     T      76     30   39   79    11   23   31   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     D      77     D      77     30   39   79     5   15   27   32   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     L      78     L      78     30   39   79     4    8   12   23   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     T      79     T      79     10   39   79     4    8   12   23   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     G      80     G      80      9   39   79     4    8   22   34   39   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     E      81     E      81      9   39   79     4   25   30   34   39   40   45   49   51   53   57   63   68   73   82   89   95  101  102  103 
LCS_GDT     D      82     D      82     11   39   79     6   11   11   12   30   40   41   46   49   52   55   59   65   73   82   89   95  101  102  103 
LCS_GDT     V      83     V      83     11   39   79    10   11   11   34   39   40   45   49   51   53   57   63   68   74   82   89   95  101  102  103 
LCS_GDT     A      84     A      84     11   39   79    10   11   11   12   25   38   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     A      85     A      85     11   39   79    10   11   22   29   36   40   45   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     F      86     F      86     11   39   79    10   11   11   23   34   39   44   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     C      87     C      87     11   39   79    10   11   15   22   29   37   42   49   51   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     D      88     D      88     11   15   79    10   11   19   24   28   31   35   42   50   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     E      89     E      89     11   15   79    10   11   11   12   15   24   27   39   50   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     L      90     L      90     11   15   79    10   11   11   12   18   24   30   38   45   50   57   63   68   74   82   89   95  101  102  103 
LCS_GDT     M      91     M      91     11   15   79    10   11   22   25   28   31   34   38   42   46   50   59   63   72   81   89   95  101  102  103 
LCS_GDT     K      92     K      92     11   15   79    10   11   11   12   13   24   26   38   41   46   50   56   63   68   78   85   95  101  102  103 
LCS_GDT     D      93     D      93      5   15   79     4    5    6   14   18   24   34   38   42   46   48   56   63   68   78   88   95  101  102  103 
LCS_GDT     T      94     T      94      5   15   79     4    5    7   14   28   31   34   38   42   46   48   53   61   70   81   89   95  101  102  103 
LCS_GDT     K      95     K      95      5   18   79     3    5    6   14   28   31   34   38   42   46   48   52   58   70   78   82   95  101  102  103 
LCS_GDT     T      96     T      96     15   18   79     8   15   15   17   19   26   35   41   45   50   54   58   66   74   82   89   95  101  102  103 
LCS_GDT     W      97     W      97     15   18   79    13   15   15   17   18   33   45   46   49   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     M      98     M      98     15   18   79    13   15   15   17   26   37   42   45   50   53   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     D      99     D      99     15   18   79    13   15   15   17   18   19   20   28   35   47   55   61   68   73   81   89   95  101  102  103 
LCS_GDT     K     100     K     100     15   18   79    13   15   15   17   18   19   25   35   45   52   58   63   68   74   82   89   95  101  102  103 
LCS_GDT     Y     101     Y     101     15   18   79    13   15   15   25   34   39   44   49   51   53   58   63   68   74   81   89   95  101  102  103 
LCS_GDT     R     102     R     102     15   18   79    13   15   15   17   18   19   34   44   50   53   58   63   68   71   80   87   92   98  101  102 
LCS_GDT     T     103     T     103     15   18   79    13   15   15   17   18   21   26   32   43   53   58   63   68   73   81   89   95  101  102  103 
LCS_GDT     K     104     K     104     15   18   79    13   15   15   17   28   38   42   47   51   53   58   63   68   74   81   89   95  101  102  103 
LCS_GDT     L     105     L     105     15   18   79    13   15   15   17   25   29   41   44   50   53   57   63   68   70   76   81   89   92   96   97 
LCS_GDT     N     106     N     106     15   18   79    13   15   15   17   18   19   20   35   46   53   57   63   68   70   73   79   89   91   96  100 
LCS_GDT     D     107     D     107     15   18   79    13   15   15   17   21   26   34   44   50   53   58   63   68   72   80   87   93   98  101  103 
LCS_GDT     S     108     S     108     15   18   79    13   15   15   17   24   38   42   47   51   53   58   63   68   70   76   81   89   92   96   97 
LCS_GDT     I     109     I     109     15   18   79    13   15   15   17   18   19   31   36   39   50   55   63   67   70   72   76   80   83   87   93 
LCS_GDT     G     110     G     110     15   18   79    13   15   15   17   18   19   20   25   45   52   57   63   68   70   73   76   82   89   93   97 
LCS_GDT     R     111     R     111      3   18   79     1    3    4    4    7   15   19   22   24   36   47   56   62   65   72   75   78   80   81   85 
LCS_GDT     D     112     D     112      3   18   34     0    3    4   10   16   18   19   21   24   25   27   33   39   44   51   60   72   73   75   76 
LCS_AVERAGE  LCS_A:  40.48  (  22.69   31.70   67.04 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     25     38     41     41     41     45     49     51     53     58     63     68     74     82     89     95    101    102    103 
GDT PERCENT_CA  13.39  22.32  33.93  36.61  36.61  36.61  40.18  43.75  45.54  47.32  51.79  56.25  60.71  66.07  73.21  79.46  84.82  90.18  91.07  91.96
GDT RMS_LOCAL    0.30   0.56   0.95   1.05   1.05   1.05   1.84   2.21   2.39   2.57   3.44   3.67   4.02   5.28   5.53   5.84   6.04   6.23   6.28   6.35
GDT RMS_ALL_CA  10.91  11.07  12.46  12.22  12.22  12.22  10.69  10.33  10.12  10.05   9.31   9.87   9.38   8.03   8.47   8.04   7.99   8.11   8.09   8.00

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         20.286
LGA    S       2      S       2         19.686
LGA    F       3      F       3         21.911
LGA    I       4      I       4         22.428
LGA    E       5      E       5         21.875
LGA    K       6      K       6         19.378
LGA    M       7      M       7         18.929
LGA    I       8      I       8         19.814
LGA    G       9      G       9         17.850
LGA    S      10      S      10         16.134
LGA    L      11      L      11         17.186
LGA    N      12      N      12         16.483
LGA    D      13      D      13         13.824
LGA    K      14      K      14         13.757
LGA    R      15      R      15         15.063
LGA    E      16      E      16         13.226
LGA    W      17      W      17         11.453
LGA    K      18      K      18         13.268
LGA    A      19      A      19         13.819
LGA    M      20      M      20         11.199
LGA    E      21      E      21         11.318
LGA    A      22      A      22         13.980
LGA    R      23      R      23         13.027
LGA    A      24      A      24         11.594
LGA    K      25      K      25         13.216
LGA    A      26      A      26         15.139
LGA    L      27      L      27         14.175
LGA    P      28      P      28         14.633
LGA    K      29      K      29         12.040
LGA    E      30      E      30         11.974
LGA    Y      31      Y      31         11.058
LGA    H      32      H      32          8.942
LGA    H      33      H      33          6.978
LGA    A      34      A      34          7.328
LGA    Y      35      Y      35          6.281
LGA    K      36      K      36          3.978
LGA    A      37      A      37          3.716
LGA    I      38      I      38          3.780
LGA    Q      39      Q      39          2.585
LGA    K      40      K      40          2.214
LGA    Y      41      Y      41          3.143
LGA    M      42      M      42          2.350
LGA    W      43      W      43          3.990
LGA    T      44      T      44          3.915
LGA    S      45      S      45          2.960
LGA    G      46      G      46          9.681
LGA    G      47      G      47          7.965
LGA    P      48      P      48          4.227
LGA    T      49      T      49          1.892
LGA    D      50      D      50          2.560
LGA    W      51      W      51          0.918
LGA    Q      52      Q      52          1.317
LGA    D      53      D      53          1.965
LGA    T      54      T      54          1.449
LGA    K      55      K      55          0.736
LGA    R      56      R      56          1.826
LGA    I      57      I      57          1.724
LGA    F      58      F      58          0.715
LGA    G      59      G      59          0.571
LGA    G      60      G      60          1.160
LGA    I      61      I      61          0.828
LGA    L      62      L      62          0.817
LGA    D      63      D      63          1.184
LGA    L      64      L      64          0.533
LGA    F      65      F      65          0.475
LGA    E      66      E      66          1.180
LGA    E      67      E      67          0.966
LGA    G      68      G      68          0.513
LGA    A      69      A      69          0.622
LGA    A      70      A      70          0.681
LGA    E      71      E      71          0.307
LGA    G      72      G      72          0.413
LGA    K      73      K      73          0.833
LGA    K      74      K      74          1.607
LGA    V      75      V      75          1.902
LGA    T      76      T      76          1.102
LGA    D      77      D      77          1.288
LGA    L      78      L      78          2.732
LGA    T      79      T      79          3.658
LGA    G      80      G      80          3.214
LGA    E      81      E      81          3.865
LGA    D      82      D      82          5.735
LGA    V      83      V      83          3.556
LGA    A      84      A      84          3.387
LGA    A      85      A      85          1.824
LGA    F      86      F      86          3.358
LGA    C      87      C      87          3.819
LGA    D      88      D      88          7.410
LGA    E      89      E      89          8.888
LGA    L      90      L      90          9.290
LGA    M      91      M      91         10.911
LGA    K      92      K      92         13.463
LGA    D      93      D      93         13.594
LGA    T      94      T      94         12.451
LGA    K      95      K      95         14.065
LGA    T      96      T      96         10.670
LGA    W      97      W      97          5.900
LGA    M      98      M      98          5.597
LGA    D      99      D      99         10.937
LGA    K     100      K     100          8.365
LGA    Y     101      Y     101          3.518
LGA    R     102      R     102          9.758
LGA    T     103      T     103         10.526
LGA    K     104      K     104          4.624
LGA    L     105      L     105          7.579
LGA    N     106      N     106         12.127
LGA    D     107      D     107          9.204
LGA    S     108      S     108          5.604
LGA    I     109      I     109         11.528
LGA    G     110      G     110         13.463
LGA    R     111      R     111         14.601
LGA    D     112      D     112         16.362

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  112  112    4.0     49    2.21    45.536    41.234     2.121

LGA_LOCAL      RMSD =  2.210  Number of atoms =   49  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 10.028  Number of atoms =  112 
Std_ALL_ATOMS  RMSD =  7.557  (standard rmsd on all 112 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.898348 * X  +  -0.124313 * Y  +  -0.421328 * Z  +  23.913977
  Y_new =  -0.425239 * X  +  -0.486688 * Y  +  -0.763090 * Z  +  28.602314
  Z_new =  -0.110194 * X  +   0.864685 * Y  +  -0.490078 * Z  +   6.552220 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.086424   -1.055169  [ DEG:   119.5433    -60.4567 ]
  Theta =   0.110418    3.031175  [ DEG:     6.3265    173.6735 ]
  Phi   =  -0.442107    2.699486  [ DEG:   -25.3309    154.6691 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0283TS599_2                                  
REMARK     2: T0283.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0283TS599_2.T0283.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  112  112   4.0   49   2.21  41.234     7.56
REMARK  ---------------------------------------------------------- 
MOLECULE T0283TS599_2
PFRMAT TS                                                                       
TARGET T0283                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      31.307  22.111  33.579  1.00  0.00              
ATOM      2  CA  SER     2      33.178  24.807  32.120  1.00  0.00              
ATOM      3  CA  PHE     3      34.324  27.945  30.806  1.00  0.00              
ATOM      4  CA  ILE     4      32.333  24.427  30.997  1.00  0.00              
ATOM      5  CA  GLU     5      29.396  26.183  29.260  1.00  0.00              
ATOM      6  CA  LYS     6      31.697  27.559  26.593  1.00  0.00              
ATOM      7  CA  MET     7      33.225  24.100  25.992  1.00  0.00              
ATOM      8  CA  ILE     8      29.794  22.450  25.746  1.00  0.00              
ATOM      9  CA  GLY     9      28.625  25.071  23.264  1.00  0.00              
ATOM     10  CA  SER    10      31.708  24.619  21.104  1.00  0.00              
ATOM     11  CA  LEU    11      31.240  20.837  21.075  1.00  0.00              
ATOM     12  CA  ASN    12      27.570  20.657  20.091  1.00  0.00              
ATOM     13  CA  ASP    13      28.275  23.144  17.291  1.00  0.00              
ATOM     14  CA  LYS    14      31.264  21.213  15.959  1.00  0.00              
ATOM     15  CA  ARG    15      29.425  17.882  15.756  1.00  0.00              
ATOM     16  CA  GLU    16      26.494  19.311  13.893  1.00  0.00              
ATOM     17  CA  TRP    17      28.867  21.053  11.484  1.00  0.00              
ATOM     18  CA  LYS    18      30.871  17.862  10.814  1.00  0.00              
ATOM     19  CA  ALA    19      27.730  15.853  10.062  1.00  0.00              
ATOM     20  CA  MET    20      26.516  18.563   7.633  1.00  0.00              
ATOM     21  CA  GLU    21      29.936  18.572   5.945  1.00  0.00              
ATOM     22  CA  ALA    22      29.854  14.806   5.530  1.00  0.00              
ATOM     23  CA  ARG    23      26.448  15.099   3.805  1.00  0.00              
ATOM     24  CA  ALA    24      27.783  17.848   1.557  1.00  0.00              
ATOM     25  CA  LYS    25      30.888  15.917   0.534  1.00  0.00              
ATOM     26  CA  ALA    26      28.775  12.829  -0.309  1.00  0.00              
ATOM     27  CA  LEU    27      26.334  14.766  -2.415  1.00  0.00              
ATOM     28  CA  PRO    28      26.325  14.732  -6.063  1.00  0.00              
ATOM     29  CA  LYS    29      27.919  17.655  -7.804  1.00  0.00              
ATOM     30  CA  GLU    30      24.579  19.245  -8.774  1.00  0.00              
ATOM     31  CA  TYR    31      23.544  19.443  -5.170  1.00  0.00              
ATOM     32  CA  HIS    32      26.942  20.621  -3.833  1.00  0.00              
ATOM     33  CA  HIS    33      26.980  23.688  -6.086  1.00  0.00              
ATOM     34  CA  ALA    34      23.457  24.599  -5.014  1.00  0.00              
ATOM     35  CA  TYR    35      24.409  24.119  -1.354  1.00  0.00              
ATOM     36  CA  LYS    36      27.347  26.464  -1.720  1.00  0.00              
ATOM     37  CA  ALA    37      25.156  29.132  -3.344  1.00  0.00              
ATOM     38  CA  ILE    38      22.573  28.761  -0.590  1.00  0.00              
ATOM     39  CA  GLN    39      25.291  29.098   2.095  1.00  0.00              
ATOM     40  CA  LYS    40      26.605  32.255   0.477  1.00  0.00              
ATOM     41  CA  TYR    41      23.171  33.931   0.469  1.00  0.00              
ATOM     42  CA  MET    42      22.440  32.767   4.050  1.00  0.00              
ATOM     43  CA  TRP    43      25.668  33.859   5.783  1.00  0.00              
ATOM     44  CA  THR    44      25.887  31.878   8.960  1.00  0.00              
ATOM     45  CA  SER    45      27.559  33.554  11.867  1.00  0.00              
ATOM     46  CA  GLY    46      28.504  30.752  14.139  1.00  0.00              
ATOM     47  CA  GLY    47      27.338  27.724  12.382  1.00  0.00              
ATOM     48  CA  PRO    48      24.322  26.460  10.614  1.00  0.00              
ATOM     49  CA  THR    49      21.461  26.844  12.998  1.00  0.00              
ATOM     50  CA  ASP    50      20.218  23.318  13.559  1.00  0.00              
ATOM     51  CA  TRP    51      21.751  21.408  10.604  1.00  0.00              
ATOM     52  CA  GLN    52      18.489  19.659   9.859  1.00  0.00              
ATOM     53  CA  ASP    53      16.575  22.951   9.533  1.00  0.00              
ATOM     54  CA  THR    54      19.175  24.474   7.196  1.00  0.00              
ATOM     55  CA  LYS    55      19.302  21.503   4.918  1.00  0.00              
ATOM     56  CA  ARG    56      15.518  21.314   4.506  1.00  0.00              
ATOM     57  CA  ILE    57      15.359  25.020   3.657  1.00  0.00              
ATOM     58  CA  PHE    58      18.182  24.693   1.137  1.00  0.00              
ATOM     59  CA  GLY    59      16.463  21.708  -0.450  1.00  0.00              
ATOM     60  CA  GLY    60      13.251  23.728  -0.879  1.00  0.00              
ATOM     61  CA  ILE    61      15.208  26.610  -2.505  1.00  0.00              
ATOM     62  CA  LEU    62      16.989  24.159  -4.811  1.00  0.00              
ATOM     63  CA  ASP    63      13.636  22.588  -5.822  1.00  0.00              
ATOM     64  CA  LEU    64      12.342  26.006  -6.780  1.00  0.00              
ATOM     65  CA  PHE    65      15.463  26.596  -8.850  1.00  0.00              
ATOM     66  CA  GLU    66      15.110  23.254 -10.609  1.00  0.00              
ATOM     67  CA  GLU    67      11.501  24.081 -11.527  1.00  0.00              
ATOM     68  CA  GLY    68      12.586  27.504 -12.856  1.00  0.00              
ATOM     69  CA  ALA    69      15.320  25.775 -14.934  1.00  0.00              
ATOM     70  CA  ALA    70      12.700  23.382 -16.278  1.00  0.00              
ATOM     71  CA  GLU    71      10.469  26.294 -17.323  1.00  0.00              
ATOM     72  CA  GLY    72      13.374  28.175 -18.920  1.00  0.00              
ATOM     73  CA  LYS    73      13.700  30.945 -16.547  1.00  0.00              
ATOM     74  CA  LYS    74      16.518  32.020 -14.340  1.00  0.00              
ATOM     75  CA  VAL    75      15.777  32.167 -10.580  1.00  0.00              
ATOM     76  CA  THR    76      16.038  35.932 -10.314  1.00  0.00              
ATOM     77  CA  ASP    77      13.668  36.377 -13.263  1.00  0.00              
ATOM     78  CA  LEU    78      10.995  33.990 -11.958  1.00  0.00              
ATOM     79  CA  THR    79      10.900  35.593  -8.520  1.00  0.00              
ATOM     80  CA  GLY    80      11.093  39.384  -9.262  1.00  0.00              
ATOM     81  CA  GLU    81      14.092  40.573  -7.177  1.00  0.00              
ATOM     82  CA  ASP    82      13.008  38.870  -3.937  1.00  0.00              
ATOM     83  CA  VAL    83      15.789  36.247  -3.742  1.00  0.00              
ATOM     84  CA  ALA    84      18.630  38.732  -4.330  1.00  0.00              
ATOM     85  CA  ALA    85      17.303  41.136  -1.755  1.00  0.00              
ATOM     86  CA  PHE    86      16.957  38.346   0.769  1.00  0.00              
ATOM     87  CA  CYS    87      20.538  37.158   0.140  1.00  0.00              
ATOM     88  CA  ASP    88      21.878  40.704   0.588  1.00  0.00              
ATOM     89  CA  GLU    89      19.907  41.067   3.837  1.00  0.00              
ATOM     90  CA  LEU    90      21.121  37.790   5.225  1.00  0.00              
ATOM     91  CA  MET    91      24.735  38.511   4.526  1.00  0.00              
ATOM     92  CA  LYS    92      24.568  41.905   6.159  1.00  0.00              
ATOM     93  CA  ASP    93      22.815  40.593   9.325  1.00  0.00              
ATOM     94  CA  THR    94      25.338  37.760   9.689  1.00  0.00              
ATOM     95  CA  LYS    95      28.372  40.045  10.078  1.00  0.00              
ATOM     96  CA  THR    96      26.670  41.969  12.879  1.00  0.00              
ATOM     97  CA  TRP    97      25.806  38.693  14.584  1.00  0.00              
ATOM     98  CA  MET    98      29.354  37.326  14.347  1.00  0.00              
ATOM     99  CA  ASP    99      30.747  40.529  15.893  1.00  0.00              
ATOM    100  CA  LYS   100      28.197  40.331  18.720  1.00  0.00              
ATOM    101  CA  TYR   101      29.064  36.668  19.437  1.00  0.00              
ATOM    102  CA  ARG   102      32.821  37.423  19.545  1.00  0.00              
ATOM    103  CA  THR   103      32.162  40.190  22.008  1.00  0.00              
ATOM    104  CA  LYS   104      29.970  37.976  24.205  1.00  0.00              
ATOM    105  CA  LEU   105      32.623  35.225  24.270  1.00  0.00              
ATOM    106  CA  ASN   106      35.346  37.752  25.093  1.00  0.00              
ATOM    107  CA  ASP   107      33.227  39.132  27.967  1.00  0.00              
ATOM    108  CA  SER   108      32.599  35.665  29.412  1.00  0.00              
ATOM    109  CA  ILE   109      36.345  34.929  29.169  1.00  0.00              
ATOM    110  CA  GLY   110      37.326  38.350  30.980  1.00  0.00              
ATOM    111  CA  ARG   111      35.659  36.147  33.279  1.00  0.00              
ATOM    112  CA  ASP   112      36.398  32.036  32.766  1.00  0.00              
TER                                                                             
END
