
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  112 (  112),  selected  112 , name T0283TS599_1
# Molecule2: number of CA atoms  112 (  888),  selected  112 , name T0283.pdb
# PARAMETERS: T0283TS599_1.T0283.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    65        27 - 91          5.00    10.13
  LCS_AVERAGE:     56.35

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    44         1 - 44          1.76    12.66
  LCS_AVERAGE:     31.94

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    35         9 - 43          0.99    12.97
  LONGEST_CONTINUOUS_SEGMENT:    35        49 - 83          0.96    12.32
  LCS_AVERAGE:     23.76

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  112
LCS_GDT     M       1     M       1      0   44   64     1    2    6   34   37   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     S       2     S       2      0   44   64     1   12   17   31   36   40   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     F       3     F       3     27   44   64    14   24   34   41   41   41   43   45   46   47   50   57   63   66   74   82   86   93   99  102 
LCS_GDT     I       4     I       4     27   44   64    14   27   37   41   41   41   43   45   46   47   50   57   63   66   74   82   86   93   99  102 
LCS_GDT     E       5     E       5     27   44   64    14   22   29   41   41   41   43   45   46   47   50   57   63   66   74   82   86   93   99  102 
LCS_GDT     K       6     K       6     27   44   64    14   23   29   41   41   41   43   45   46   47   50   57   63   67   74   82   87   95   99  102 
LCS_GDT     M       7     M       7     27   44   64    14   27   37   41   41   41   43   45   46   47   50   57   63   68   74   82   87   95   99  102 
LCS_GDT     I       8     I       8     27   44   64    14   22   37   41   41   41   43   45   46   47   50   57   63   67   74   82   87   95   99  102 
LCS_GDT     G       9     G       9     35   44   64    14   22   29   41   41   41   43   45   46   47   50   57   63   68   74   82   87   95   99  102 
LCS_GDT     S      10     S      10     35   44   64    14   26   37   41   41   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     L      11     L      11     35   44   64    14   27   37   41   41   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     N      12     N      12     35   44   64    14   22   37   41   41   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     D      13     D      13     35   44   64    14   26   37   41   41   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     K      14     K      14     35   44   64    14   27   37   41   41   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     R      15     R      15     35   44   64    14   22   37   41   41   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     E      16     E      16     35   44   64    12   27   37   41   41   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     W      17     W      17     35   44   64    14   27   37   41   41   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     K      18     K      18     35   44   64    12   27   37   41   41   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     A      19     A      19     35   44   64    12   27   37   41   41   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     M      20     M      20     35   44   64    13   27   37   41   41   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     E      21     E      21     35   44   64    12   22   37   41   41   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     A      22     A      22     35   44   64    12   22   37   41   41   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     R      23     R      23     35   44   64    12   27   37   41   41   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     A      24     A      24     35   44   64    12   22   37   41   41   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     K      25     K      25     35   44   64     6   20   37   41   41   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     A      26     A      26     35   44   64     6   27   37   41   41   41   43   45   46   47   50   53   62   67   74   82   88   95   99  102 
LCS_GDT     L      27     L      27     35   44   65    15   27   37   41   41   41   43   45   46   47   50   56   62   67   74   82   88   95   99  102 
LCS_GDT     P      28     P      28     35   44   65    15   27   37   41   41   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     K      29     K      29     35   44   65    15   27   37   41   41   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     E      30     E      30     35   44   65    10   27   37   41   41   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     Y      31     Y      31     35   44   65    15   27   37   41   41   41   43   45   46   47   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     H      32     H      32     35   44   65    15   27   37   41   41   41   43   45   46   48   53   57   63   68   74   82   88   95   99  102 
LCS_GDT     H      33     H      33     35   44   65    15   27   37   41   41   41   43   45   46   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     A      34     A      34     35   44   65    15   27   37   41   41   41   43   45   46   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     Y      35     Y      35     35   44   65    15   27   37   41   41   41   43   45   46   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     K      36     K      36     35   44   65    15   27   37   41   41   41   43   46   49   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     A      37     A      37     35   44   65    15   27   37   41   41   41   43   46   49   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     I      38     I      38     35   44   65    15   27   37   41   41   41   43   46   49   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     Q      39     Q      39     35   44   65    15   27   37   41   41   41   43   46   49   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     K      40     K      40     35   44   65    15   27   37   41   41   41   43   46   49   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     Y      41     Y      41     35   44   65    15   27   37   41   41   41   43   46   49   50   53   57   63   68   74   82   88   95   99  102 
LCS_GDT     M      42     M      42     35   44   65    15   27   37   41   41   41   43   46   49   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     W      43     W      43     35   44   65    13   27   37   41   41   41   43   46   49   50   52   57   63   68   74   82   88   95   99  102 
LCS_GDT     T      44     T      44      4   44   65     5   12   21   33   39   41   42   46   49   50   53   55   59   66   74   82   88   95   99  102 
LCS_GDT     S      45     S      45      4   36   65     3   19   28   33   38   41   42   46   49   50   54   58   62   67   74   82   88   95   99  102 
LCS_GDT     G      46     G      46      5    8   65     3    4    7    7    7   11   18   23   29   38   46   48   51   57   67   76   87   91   97   99 
LCS_GDT     G      47     G      47      5   38   65     3    4    5    6    7   12   18   26   39   44   49   58   62   67   74   80   88   95   99  102 
LCS_GDT     P      48     P      48      5   39   65     3    4    5    8   32   36   42   46   49   50   54   58   62   67   74   82   88   95   99  102 
LCS_GDT     T      49     T      49     35   39   65    13   28   33   37   39   41   42   46   49   50   54   58   62   67   74   82   88   95   99  102 
LCS_GDT     D      50     D      50     35   39   65     8   24   33   37   39   41   42   46   49   50   54   58   62   67   74   81   88   94   99  102 
LCS_GDT     W      51     W      51     35   39   65    13   28   33   37   39   41   42   46   49   50   54   58   62   67   74   82   88   95   99  102 
LCS_GDT     Q      52     Q      52     35   39   65    14   28   33   37   39   41   42   46   49   50   54   58   62   67   74   80   87   92   98  102 
LCS_GDT     D      53     D      53     35   39   65    14   28   33   37   39   41   42   46   49   50   54   58   62   67   74   81   88   94   99  102 
LCS_GDT     T      54     T      54     35   39   65     8   28   33   37   39   41   42   46   49   50   54   58   62   68   74   82   88   95   99  102 
LCS_GDT     K      55     K      55     35   39   65    10   28   33   37   39   41   42   46   49   50   54   58   62   68   74   82   88   95   99  102 
LCS_GDT     R      56     R      56     35   39   65    13   28   33   37   39   41   42   46   49   50   54   58   62   67   74   82   88   95   99  102 
LCS_GDT     I      57     I      57     35   39   65    14   28   33   37   39   41   42   46   49   50   54   58   62   68   74   82   88   95   99  102 
LCS_GDT     F      58     F      58     35   39   65    14   28   33   37   39   41   42   46   49   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     G      59     G      59     35   39   65    14   28   33   37   39   41   42   46   49   50   54   58   62   68   74   82   88   95   99  102 
LCS_GDT     G      60     G      60     35   39   65    14   28   33   37   39   41   42   46   49   50   54   58   62   68   74   82   88   95   99  102 
LCS_GDT     I      61     I      61     35   39   65    14   28   33   37   39   41   42   46   49   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     L      62     L      62     35   39   65    14   28   33   37   39   41   42   46   49   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     D      63     D      63     35   39   65    14   28   33   37   39   41   42   46   49   50   54   58   62   68   74   82   88   95   99  102 
LCS_GDT     L      64     L      64     35   39   65    14   28   33   37   39   41   42   46   49   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     F      65     F      65     35   39   65    14   28   33   37   39   41   42   46   49   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     E      66     E      66     35   39   65    14   28   33   37   39   41   42   46   49   50   54   58   62   67   74   82   88   95   99  102 
LCS_GDT     E      67     E      67     35   39   65    14   28   33   37   39   41   42   46   49   50   54   58   62   68   74   82   88   95   99  102 
LCS_GDT     G      68     G      68     35   39   65    14   28   33   37   39   41   42   46   49   50   54   58   62   68   74   82   88   95   99  102 
LCS_GDT     A      69     A      69     35   39   65    14   28   33   37   39   41   42   46   49   50   54   58   62   67   74   82   88   95   99  102 
LCS_GDT     A      70     A      70     35   39   65    13   28   33   37   39   41   42   46   49   50   54   58   62   67   74   81   88   95   99  102 
LCS_GDT     E      71     E      71     35   39   65    12   28   33   37   39   41   42   46   49   50   54   58   62   67   74   82   88   95   99  102 
LCS_GDT     G      72     G      72     35   39   65    12   28   33   37   39   41   42   46   49   50   54   58   62   67   74   80   88   95   99  102 
LCS_GDT     K      73     K      73     35   39   65    13   28   33   37   39   41   42   46   49   50   54   58   62   67   74   82   88   95   99  102 
LCS_GDT     K      74     K      74     35   39   65     6   23   33   37   39   41   42   46   49   50   54   58   62   68   74   82   88   95   99  102 
LCS_GDT     V      75     V      75     35   39   65     6   20   33   37   39   41   42   46   49   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     T      76     T      76     35   39   65     6   23   32   37   39   41   42   46   49   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     D      77     D      77     35   39   65     6   22   31   37   39   41   42   46   49   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     L      78     L      78     35   39   65     6   13   33   37   39   41   42   46   49   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     T      79     T      79     35   39   65     6   28   33   37   39   41   42   46   49   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     G      80     G      80     35   39   65     6   28   33   37   39   41   42   46   49   50   52   56   62   68   74   82   88   95   99  102 
LCS_GDT     E      81     E      81     35   39   65    14   28   33   37   39   41   42   46   49   50   52   54   59   65   73   82   87   95   99  102 
LCS_GDT     D      82     D      82     35   39   65    14   28   33   37   39   41   42   46   49   50   51   54   59   65   73   79   86   92   97  102 
LCS_GDT     V      83     V      83     35   39   65    11   27   33   37   39   41   42   46   49   50   52   54   59   66   74   82   88   95   99  102 
LCS_GDT     A      84     A      84     11   39   65     9   11   11   12   13   38   39   45   49   50   52   57   63   68   74   82   88   95   99  102 
LCS_GDT     A      85     A      85     11   39   65     9   11   11   22   28   37   41   45   49   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     F      86     F      86     11   39   65     9   11   11   12   13   27   40   45   49   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     C      87     C      87     11   39   65     9   11   11   22   27   36   40   45   49   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     D      88     D      88     11   15   65     9   11   14   19   25   30   35   38   44   50   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     E      89     E      89     11   15   65     9   11   11   12   15   18   21   26   39   47   54   58   63   68   74   82   88   95   99  102 
LCS_GDT     L      90     L      90     11   15   65     9   11   11   12   15   18   23   32   40   44   51   58   63   68   74   82   88   95   99  102 
LCS_GDT     M      91     M      91     11   15   65     9   11   18   23   29   31   33   37   40   44   48   55   63   68   74   82   88   95   99  102 
LCS_GDT     K      92     K      92     11   15   64     6   11   11   12   13   18   21   36   36   44   46   49   57   64   68   82   87   95   99  102 
LCS_GDT     D      93     D      93      5   15   63     4    4    6   12   15   18   33   36   39   44   46   50   57   64   68   82   87   95   99  102 
LCS_GDT     T      94     T      94      5   15   63     4    4    8   12   29   31   33   36   39   44   47   50   63   67   74   82   88   95   99  102 
LCS_GDT     K      95     K      95      5   18   59     3    4    5   12   29   31   33   36   39   44   46   50   57   61   68   82   86   95   99  102 
LCS_GDT     T      96     T      96     15   18   59    10   15   15   16   18   24   31   37   42   46   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     W      97     W      97     15   18   59    13   15   15   17   26   34   40   45   46   47   53   57   63   68   74   82   88   95   99  102 
LCS_GDT     M      98     M      98     15   18   59    13   15   15   16   22   30   35   45   47   50   54   58   62   68   74   82   88   95   99  102 
LCS_GDT     D      99     D      99     15   18   59    13   15   15   16   18   18   21   26   30   39   44   56   62   67   74   82   88   95   99  102 
LCS_GDT     K     100     K     100     15   18   59    13   15   15   16   18   20   25   31   39   46   50   57   63   68   74   82   88   95   99  102 
LCS_GDT     Y     101     Y     101     15   18   59    13   15   15   19   27   32   40   45   47   50   54   58   62   67   74   82   88   95   99  102 
LCS_GDT     R     102     R     102     15   18   59    13   15   15   16   18   18   24   33   40   47   54   58   62   67   73   78   87   92   97  100 
LCS_GDT     T     103     T     103     15   18   59    13   15   15   16   18   18   23   28   32   41   50   58   62   67   73   79   87   95   98  102 
LCS_GDT     K     104     K     104     15   18   59    13   15   15   16   22   27   33   45   47   50   54   58   62   67   74   82   88   95   99  102 
LCS_GDT     L     105     L     105     15   18   59    13   15   15   16   18   19   28   41   46   49   54   58   62   64   71   78   87   91   94   96 
LCS_GDT     N     106     N     106     15   18   59    13   15   15   16   18   18   21   22   32   43   49   58   61   64   69   73   82   86   93   95 
LCS_GDT     D     107     D     107     15   18   59    13   15   15   16   18   21   25   33   40   47   54   58   62   67   73   79   87   94   97  100 
LCS_GDT     S     108     S     108     15   18   59    13   15   15   16   19   30   35   41   47   50   54   58   62   67   73   78   87   91   94   99 
LCS_GDT     I     109     I     109     15   18   56    12   15   15   16   18   18   21   22   26   36   48   55   61   64   69   72   75   81   84   90 
LCS_GDT     G     110     G     110     15   18   36    13   15   15   16   18   18   21   22   27   33   46   55   59   64   69   72   75   81   84   90 
LCS_GDT     R     111     R     111      3   18   36     0    3    4    4    8   15   19   21   23   25   29   30   33   37   63   72   73   77   78   80 
LCS_GDT     D     112     D     112      3   18   36     0    3    4    6   14   16   19   22   24   25   27   28   31   34   38   41   47   54   57   61 
LCS_AVERAGE  LCS_A:  37.35  (  23.76   31.94   56.35 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     15     28     37     41     41     41     43     46     49     50     54     58     63     68     74     82     88     95     99    102 
GDT PERCENT_CA  13.39  25.00  33.04  36.61  36.61  36.61  38.39  41.07  43.75  44.64  48.21  51.79  56.25  60.71  66.07  73.21  78.57  84.82  88.39  91.07
GDT RMS_LOCAL    0.27   0.64   0.94   1.14   1.14   1.14   1.45   1.91   2.22   2.32   3.57   3.95   4.41   5.18   5.12   5.56   6.14   6.37   6.48   6.63
GDT RMS_ALL_CA  13.21  12.38  12.96  12.82  12.82  12.82  12.59  11.89  11.59  11.52  10.00   9.88   9.70   9.04   9.45   9.18   8.31   8.32   8.56   8.46

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         23.706
LGA    S       2      S       2         22.563
LGA    F       3      F       3         24.181
LGA    I       4      I       4         24.808
LGA    E       5      E       5         24.588
LGA    K       6      K       6         21.387
LGA    M       7      M       7         20.304
LGA    I       8      I       8         21.641
LGA    G       9      G       9         19.628
LGA    S      10      S      10         16.909
LGA    L      11      L      11         18.006
LGA    N      12      N      12         17.778
LGA    D      13      D      13         14.501
LGA    K      14      K      14         13.733
LGA    R      15      R      15         15.528
LGA    E      16      E      16         13.700
LGA    W      17      W      17         11.131
LGA    K      18      K      18         13.055
LGA    A      19      A      19         14.015
LGA    M      20      M      20         11.040
LGA    E      21      E      21         11.005
LGA    A      22      A      22         14.087
LGA    R      23      R      23         13.242
LGA    A      24      A      24         11.676
LGA    K      25      K      25         13.502
LGA    A      26      A      26         15.521
LGA    L      27      L      27         14.635
LGA    P      28      P      28         15.232
LGA    K      29      K      29         13.206
LGA    E      30      E      30         12.932
LGA    Y      31      Y      31         11.525
LGA    H      32      H      32          9.542
LGA    H      33      H      33          7.902
LGA    A      34      A      34          7.760
LGA    Y      35      Y      35          6.210
LGA    K      36      K      36          3.986
LGA    A      37      A      37          3.949
LGA    I      38      I      38          3.181
LGA    Q      39      Q      39          1.443
LGA    K      40      K      40          1.369
LGA    Y      41      Y      41          3.116
LGA    M      42      M      42          2.314
LGA    W      43      W      43          3.942
LGA    T      44      T      44          2.039
LGA    S      45      S      45          1.979
LGA    G      46      G      46          8.541
LGA    G      47      G      47          6.995
LGA    P      48      P      48          3.831
LGA    T      49      T      49          1.077
LGA    D      50      D      50          2.022
LGA    W      51      W      51          1.780
LGA    Q      52      Q      52          0.660
LGA    D      53      D      53          0.815
LGA    T      54      T      54          1.807
LGA    K      55      K      55          1.753
LGA    R      56      R      56          0.843
LGA    I      57      I      57          0.700
LGA    F      58      F      58          0.785
LGA    G      59      G      59          0.824
LGA    G      60      G      60          0.528
LGA    I      61      I      61          0.772
LGA    L      62      L      62          1.398
LGA    D      63      D      63          1.349
LGA    L      64      L      64          0.765
LGA    F      65      F      65          1.148
LGA    E      66      E      66          1.440
LGA    E      67      E      67          0.894
LGA    G      68      G      68          0.725
LGA    A      69      A      69          0.835
LGA    A      70      A      70          0.648
LGA    E      71      E      71          0.402
LGA    G      72      G      72          0.907
LGA    K      73      K      73          0.733
LGA    K      74      K      74          0.648
LGA    V      75      V      75          0.703
LGA    T      76      T      76          0.611
LGA    D      77      D      77          1.421
LGA    L      78      L      78          1.991
LGA    T      79      T      79          2.138
LGA    G      80      G      80          2.392
LGA    E      81      E      81          2.614
LGA    D      82      D      82          3.708
LGA    V      83      V      83          3.321
LGA    A      84      A      84          4.900
LGA    A      85      A      85          5.275
LGA    F      86      F      86          5.357
LGA    C      87      C      87          5.421
LGA    D      88      D      88         10.378
LGA    E      89      E      89         12.379
LGA    L      90      L      90         11.598
LGA    M      91      M      91         13.331
LGA    K      92      K      92         17.406
LGA    D      93      D      93         18.147
LGA    T      94      T      94         15.703
LGA    K      95      K      95         17.777
LGA    T      96      T      96         14.861
LGA    W      97      W      97          9.778
LGA    M      98      M      98          9.463
LGA    D      99      D      99         16.111
LGA    K     100      K     100         14.112
LGA    Y     101      Y     101          8.347
LGA    R     102      R     102         14.557
LGA    T     103      T     103         17.321
LGA    K     104      K     104         11.389
LGA    L     105      L     105         11.527
LGA    N     106      N     106         18.397
LGA    D     107      D     107         17.214
LGA    S     108      S     108         11.403
LGA    I     109      I     109         16.623
LGA    G     110      G     110         21.309
LGA    R     111      R     111         21.440
LGA    D     112      D     112         19.288

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  112  112    4.0     46    1.91    43.973    40.011     2.294

LGA_LOCAL      RMSD =  1.905  Number of atoms =   46  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 11.729  Number of atoms =  112 
Std_ALL_ATOMS  RMSD =  7.910  (standard rmsd on all 112 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.219361 * X  +  -0.908225 * Y  +  -0.356382 * Z  +  25.238111
  Y_new =   0.789547 * X  +  -0.049332 * Y  +   0.611704 * Z  +  29.498075
  Z_new =  -0.573146 * X  +  -0.415564 * Y  +   0.706265 * Z  +   5.059807 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.531844    2.609748  [ DEG:   -30.4724    149.5276 ]
  Theta =   0.610340    2.531253  [ DEG:    34.9699    145.0301 ]
  Phi   =   1.299800   -1.841793  [ DEG:    74.4730   -105.5270 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0283TS599_1                                  
REMARK     2: T0283.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0283TS599_1.T0283.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  112  112   4.0   46   1.91  40.011     7.91
REMARK  ---------------------------------------------------------- 
MOLECULE T0283TS599_1
PFRMAT TS                                                                       
TARGET T0283                                                                    
MODEL  1                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      33.459  26.377  31.995  1.00  0.00              
ATOM      2  CA  SER     2      35.704  28.343  30.002  1.00  0.00              
ATOM      3  CA  PHE     3      37.324  30.905  28.092  1.00  0.00              
ATOM      4  CA  ILE     4      34.768  28.000  28.961  1.00  0.00              
ATOM      5  CA  GLU     5      32.054  29.892  27.032  1.00  0.00              
ATOM      6  CA  LYS     6      34.372  30.320  24.029  1.00  0.00              
ATOM      7  CA  MET     7      35.241  26.585  24.106  1.00  0.00              
ATOM      8  CA  ILE     8      31.552  25.562  24.310  1.00  0.00              
ATOM      9  CA  GLY     9      30.665  27.861  21.405  1.00  0.00              
ATOM     10  CA  SER    10      33.453  26.383  19.254  1.00  0.00              
ATOM     11  CA  LEU    11      32.298  22.808  20.083  1.00  0.00              
ATOM     12  CA  ASN    12      28.576  23.141  19.341  1.00  0.00              
ATOM     13  CA  ASP    13      29.430  24.877  16.040  1.00  0.00              
ATOM     14  CA  LYS    14      31.931  22.248  14.956  1.00  0.00              
ATOM     15  CA  ARG    15      29.568  19.270  15.561  1.00  0.00              
ATOM     16  CA  GLU    16      26.728  20.810  13.623  1.00  0.00              
ATOM     17  CA  TRP    17      29.092  21.592  10.778  1.00  0.00              
ATOM     18  CA  LYS    18      30.540  18.102  10.652  1.00  0.00              
ATOM     19  CA  ALA    19      27.183  16.436  10.402  1.00  0.00              
ATOM     20  CA  MET    20      26.223  18.834   7.579  1.00  0.00              
ATOM     21  CA  GLU    21      29.475  18.082   5.771  1.00  0.00              
ATOM     22  CA  ALA    22      28.942  14.315   5.944  1.00  0.00              
ATOM     23  CA  ARG    23      25.457  14.798   4.423  1.00  0.00              
ATOM     24  CA  ALA    24      26.999  16.974   1.683  1.00  0.00              
ATOM     25  CA  LYS    25      29.777  14.554   0.809  1.00  0.00              
ATOM     26  CA  ALA    26      27.111  11.774   0.404  1.00  0.00              
ATOM     27  CA  LEU    27      24.909  13.853  -1.818  1.00  0.00              
ATOM     28  CA  PRO    28      24.671  13.888  -5.402  1.00  0.00              
ATOM     29  CA  LYS    29      26.869  16.194  -7.381  1.00  0.00              
ATOM     30  CA  GLU    30      23.828  18.270  -8.448  1.00  0.00              
ATOM     31  CA  TYR    31      22.981  18.956  -4.853  1.00  0.00              
ATOM     32  CA  HIS    32      26.549  19.723  -3.635  1.00  0.00              
ATOM     33  CA  HIS    33      26.953  22.445  -6.272  1.00  0.00              
ATOM     34  CA  ALA    34      23.555  23.939  -5.392  1.00  0.00              
ATOM     35  CA  TYR    35      24.443  23.893  -1.685  1.00  0.00              
ATOM     36  CA  LYS    36      27.719  25.693  -2.353  1.00  0.00              
ATOM     37  CA  ALA    37      25.884  28.323  -4.423  1.00  0.00              
ATOM     38  CA  ILE    38      23.301  28.805  -1.656  1.00  0.00              
ATOM     39  CA  GLN    39      26.078  29.162   0.963  1.00  0.00              
ATOM     40  CA  LYS    40      27.760  31.883  -1.062  1.00  0.00              
ATOM     41  CA  TYR    41      24.532  33.903  -1.490  1.00  0.00              
ATOM     42  CA  MET    42      23.584  33.529   2.207  1.00  0.00              
ATOM     43  CA  TRP    43      26.858  34.380   3.923  1.00  0.00              
ATOM     44  CA  THR    44      26.593  33.066   7.425  1.00  0.00              
ATOM     45  CA  SER    45      28.402  34.949  10.122  1.00  0.00              
ATOM     46  CA  GLY    46      29.354  32.362  12.662  1.00  0.00              
ATOM     47  CA  GLY    47      28.092  29.193  11.151  1.00  0.00              
ATOM     48  CA  PRO    48      24.964  27.854   9.709  1.00  0.00              
ATOM     49  CA  THR    49      22.280  28.496  12.251  1.00  0.00              
ATOM     50  CA  ASP    50      20.872  25.120  13.078  1.00  0.00              
ATOM     51  CA  TRP    51      22.027  22.850  10.287  1.00  0.00              
ATOM     52  CA  GLN    52      18.578  21.279   9.805  1.00  0.00              
ATOM     53  CA  ASP    53      16.878  24.643   9.266  1.00  0.00              
ATOM     54  CA  THR    54      19.464  25.878   6.838  1.00  0.00              
ATOM     55  CA  LYS    55      19.556  22.762   4.662  1.00  0.00              
ATOM     56  CA  ARG    56      15.735  22.735   4.377  1.00  0.00              
ATOM     57  CA  ILE    57      15.791  26.392   3.252  1.00  0.00              
ATOM     58  CA  PHE    58      18.498  25.648   0.648  1.00  0.00              
ATOM     59  CA  GLY    59      16.575  22.658  -0.594  1.00  0.00              
ATOM     60  CA  GLY    60      13.495  24.905  -1.166  1.00  0.00              
ATOM     61  CA  ILE    61      15.636  27.470  -3.042  1.00  0.00              
ATOM     62  CA  LEU    62      17.138  24.724  -5.222  1.00  0.00              
ATOM     63  CA  ASP    63      13.698  23.315  -5.994  1.00  0.00              
ATOM     64  CA  LEU    64      12.517  26.791  -7.128  1.00  0.00              
ATOM     65  CA  PHE    65      15.527  27.203  -9.361  1.00  0.00              
ATOM     66  CA  GLU    66      14.998  23.751 -10.917  1.00  0.00              
ATOM     67  CA  GLU    67      11.321  24.537 -11.624  1.00  0.00              
ATOM     68  CA  GLY    68      12.350  27.864 -13.210  1.00  0.00              
ATOM     69  CA  ALA    69      14.928  26.075 -15.369  1.00  0.00              
ATOM     70  CA  ALA    70      12.241  23.648 -16.490  1.00  0.00              
ATOM     71  CA  GLU    71       9.940  26.521 -17.498  1.00  0.00              
ATOM     72  CA  GLY    72      12.728  28.371 -19.309  1.00  0.00              
ATOM     73  CA  LYS    73      13.111  31.275 -16.972  1.00  0.00              
ATOM     74  CA  LYS    74      16.320  32.427 -15.401  1.00  0.00              
ATOM     75  CA  VAL    75      16.571  32.206 -11.575  1.00  0.00              
ATOM     76  CA  THR    76      16.796  35.980 -11.200  1.00  0.00              
ATOM     77  CA  ASP    77      13.730  36.358 -13.456  1.00  0.00              
ATOM     78  CA  LEU    78      11.695  33.794 -11.463  1.00  0.00              
ATOM     79  CA  THR    79      12.431  35.486  -8.148  1.00  0.00              
ATOM     80  CA  GLY    80      12.010  39.056  -9.436  1.00  0.00              
ATOM     81  CA  GLU    81      14.867  41.481  -8.867  1.00  0.00              
ATOM     82  CA  ASP    82      14.132  42.177  -5.157  1.00  0.00              
ATOM     83  CA  VAL    83      15.483  38.692  -4.297  1.00  0.00              
ATOM     84  CA  ALA    84      18.853  39.366  -5.975  1.00  0.00              
ATOM     85  CA  ALA    85      19.253  42.719  -4.124  1.00  0.00              
ATOM     86  CA  PHE    86      18.416  40.989  -0.872  1.00  0.00              
ATOM     87  CA  CYS    87      21.053  38.299  -1.562  1.00  0.00              
ATOM     88  CA  ASP    88      23.677  40.985  -2.328  1.00  0.00              
ATOM     89  CA  GLU    89      22.760  42.817   0.926  1.00  0.00              
ATOM     90  CA  LEU    90      23.072  39.574   2.917  1.00  0.00              
ATOM     91  CA  MET    91      26.460  38.843   1.495  1.00  0.00              
ATOM     92  CA  LYS    92      27.806  42.324   2.295  1.00  0.00              
ATOM     93  CA  ASP    93      26.485  42.284   5.881  1.00  0.00              
ATOM     94  CA  THR    94      27.926  38.817   6.638  1.00  0.00              
ATOM     95  CA  LYS    95      31.501  39.865   5.939  1.00  0.00              
ATOM     96  CA  THR    96      31.357  42.910   8.255  1.00  0.00              
ATOM     97  CA  TRP    97      29.893  40.776  11.042  1.00  0.00              
ATOM     98  CA  MET    98      32.606  38.084  10.647  1.00  0.00              
ATOM     99  CA  ASP    99      35.346  40.684  10.999  1.00  0.00              
ATOM    100  CA  LYS   100      33.696  42.077  14.150  1.00  0.00              
ATOM    101  CA  TYR   101      33.302  38.606  15.693  1.00  0.00              
ATOM    102  CA  ARG   102      36.959  37.689  15.053  1.00  0.00              
ATOM    103  CA  THR   103      38.033  40.916  16.653  1.00  0.00              
ATOM    104  CA  LYS   104      35.852  40.300  19.716  1.00  0.00              
ATOM    105  CA  LEU   105      37.225  36.776  20.125  1.00  0.00              
ATOM    106  CA  ASN   106      40.799  38.031  19.734  1.00  0.00              
ATOM    107  CA  ASP   107      40.178  40.669  22.427  1.00  0.00              
ATOM    108  CA  SER   108      38.717  38.084  24.770  1.00  0.00              
ATOM    109  CA  ILE   109      41.732  35.797  24.191  1.00  0.00              
ATOM    110  CA  GLY   110      44.309  38.968  24.903  1.00  0.00              
ATOM    111  CA  ARG   111      42.668  37.334  27.652  1.00  0.00              
ATOM    112  CA  ASP   112      41.017  33.527  28.371  1.00  0.00              
TER                                                                             
END
