
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  112 (  112),  selected  112 , name T0283TS168_3
# Molecule2: number of CA atoms  112 (  888),  selected  112 , name T0283.pdb
# PARAMETERS: T0283TS168_3.T0283.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    40        32 - 71          4.90    26.03
  LCS_AVERAGE:     31.78

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26         2 - 27          1.99    20.85
  LCS_AVERAGE:     16.17

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24         3 - 26          0.33    21.79
  LCS_AVERAGE:     13.46

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  112
LCS_GDT     M       1     M       1      0    4   29     0    0    2    3    4    4    4    5    8   22   24   27   33   37   44   48   54   60   63   66 
LCS_GDT     S       2     S       2      3   26   29     3    3    3    3    5    8   14   19   25   34   37   42   45   46   49   54   57   61   64   67 
LCS_GDT     F       3     F       3     24   26   29    23   24   24   24   24   25   26   30   32   36   39   42   45   48   52   55   59   62   66   68 
LCS_GDT     I       4     I       4     24   26   29    23   24   24   24   24   25   26   30   32   36   39   42   45   48   52   54   59   62   66   68 
LCS_GDT     E       5     E       5     24   26   29    23   24   24   24   24   25   26   30   32   36   39   42   45   48   52   55   59   62   66   68 
LCS_GDT     K       6     K       6     24   26   29    23   24   24   24   24   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     M       7     M       7     24   26   29    23   24   24   24   24   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     I       8     I       8     24   26   29    23   24   24   24   24   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     G       9     G       9     24   26   29    23   24   24   24   24   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     S      10     S      10     24   26   29    23   24   24   24   24   24   25   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     L      11     L      11     24   26   29    23   24   24   24   24   24   25   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     N      12     N      12     24   26   29    23   24   24   24   24   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     D      13     D      13     24   26   29    23   24   24   24   24   24   25   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     K      14     K      14     24   26   29    23   24   24   24   24   24   24   24   31   35   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     R      15     R      15     24   26   29    23   24   24   24   24   24   25   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     E      16     E      16     24   26   29    23   24   24   24   24   24   25   29   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     W      17     W      17     24   26   29    23   24   24   24   24   24   24   24   25   30   38   41   44   48   52   55   59   62   66   69 
LCS_GDT     K      18     K      18     24   26   29    23   24   24   24   24   24   24   28   30   31   34   39   43   48   52   54   59   62   66   69 
LCS_GDT     A      19     A      19     24   26   29    23   24   24   24   24   24   24   25   28   35   38   42   45   48   52   55   59   62   66   69 
LCS_GDT     M      20     M      20     24   26   29    23   24   24   24   24   24   24   24   25   28   38   41   43   48   52   54   58   61   65   69 
LCS_GDT     E      21     E      21     24   26   29    23   24   24   24   24   24   24   24   27   28   34   37   41   44   47   51   56   58   64   67 
LCS_GDT     A      22     A      22     24   26   29    23   24   24   24   24   24   24   28   30   32   34   39   41   45   52   53   56   61   64   67 
LCS_GDT     R      23     R      23     24   26   29    23   24   24   24   24   24   24   24   25   30   38   41   43   48   52   54   57   61   64   67 
LCS_GDT     A      24     A      24     24   26   29    23   24   24   24   24   24   24   24   25   25   29   34   35   38   42   47   49   52   59   62 
LCS_GDT     K      25     K      25     24   26   29    23   24   24   24   24   24   24   24   26   27   32   39   41   44   46   47   50   52   56   61 
LCS_GDT     A      26     A      26     24   26   29    20   24   24   24   24   24   24   24   27   32   34   39   41   44   46   52   56   58   61   67 
LCS_GDT     L      27     L      27      5   26   29     3    5    5    6    7   12   22   24   27   32   38   41   44   48   52   54   58   61   65   69 
LCS_GDT     P      28     P      28      5   17   29     3    5    5    6    7   12   15   17   21   29   34   39   41   44   46   47   51   55   61   65 
LCS_GDT     K      29     K      29     16   17   29    15   15   16   16   16   16   16   17   21   26   34   39   41   44   46   47   49   51   54   59 
LCS_GDT     E      30     E      30     16   17   32    15   15   16   16   16   16   16   17   17   18   20   20   30   34   40   45   47   51   53   59 
LCS_GDT     Y      31     Y      31     16   17   39    15   15   16   16   16   16   16   17   17   18   20   21   30   36   39   45   47   50   51   59 
LCS_GDT     H      32     H      32     16   17   40    15   15   16   16   16   16   16   20   23   28   34   39   41   44   47   51   55   61   65   69 
LCS_GDT     H      33     H      33     16   17   40    15   15   16   16   16   16   16   17   21   26   34   39   41   46   52   55   59   62   66   69 
LCS_GDT     A      34     A      34     16   17   40    15   15   16   16   16   16   16   17   20   23   27   32   40   46   49   55   59   62   66   69 
LCS_GDT     Y      35     Y      35     16   17   40    15   15   16   16   16   16   16   17   21   24   30   36   40   43   46   47   55   62   66   69 
LCS_GDT     K      36     K      36     16   17   40    15   15   16   16   16   16   22   25   27   32   36   40   44   46   52   55   59   62   66   69 
LCS_GDT     A      37     A      37     16   17   40    15   15   16   16   16   16   16   17   21   30   36   40   44   48   52   54   58   62   65   69 
LCS_GDT     I      38     I      38     16   17   40    15   15   16   16   16   16   16   17   18   23   27   36   41   44   46   49   56   61   64   67 
LCS_GDT     Q      39     Q      39     16   17   40    15   15   16   16   16   16   18   21   26   29   34   39   41   44   46   48   54   61   64   67 
LCS_GDT     K      40     K      40     16   17   40    15   15   16   16   16   19   23   27   30   32   34   39   41   44   49   54   57   61   64   67 
LCS_GDT     Y      41     Y      41     16   17   40    15   15   16   16   16   16   16   21   27   32   34   39   41   44   46   52   55   61   64   67 
LCS_GDT     M      42     M      42     16   17   40    15   15   16   16   16   16   16   17   20   26   28   39   41   44   46   48   51   53   58   63 
LCS_GDT     W      43     W      43     16   17   40    15   15   16   16   16   16   16   17   25   28   32   36   41   44   46   48   51   53   58   63 
LCS_GDT     T      44     T      44     16   17   40     3   10   16   16   16   19   24   28   30   32   34   39   41   44   46   48   51   53   58   63 
LCS_GDT     S      45     S      45      3   17   40     3    3    3    4    5    7   14   24   30   31   34   36   39   44   46   47   51   53   58   63 
LCS_GDT     G      46     G      46      3    7   40     3    3    5    8   14   19   24   28   30   32   34   39   41   44   46   48   51   53   58   63 
LCS_GDT     G      47     G      47      5    7   40     3    4    5    9   12   19   24   28   30   32   34   39   41   44   46   48   51   53   58   63 
LCS_GDT     P      48     P      48      5    7   40     3    4    5    9   12   19   24   28   30   32   34   39   41   44   46   47   51   53   58   63 
LCS_GDT     T      49     T      49      5   22   40     3    3    7    9   17   20   24   28   30   32   34   39   41   44   46   47   51   53   58   63 
LCS_GDT     D      50     D      50     21   22   40     3    4   17   20   21   22   24   28   30   32   34   39   41   44   46   47   51   53   57   63 
LCS_GDT     W      51     W      51     21   22   40     8   15   19   20   21   22   24   28   30   32   34   39   41   44   46   47   51   53   55   61 
LCS_GDT     Q      52     Q      52     21   22   40    12   18   19   20   21   22   24   28   30   32   34   39   41   44   46   47   50   52   55   57 
LCS_GDT     D      53     D      53     21   22   40    10   18   19   20   21   22   24   28   30   32   34   39   41   44   46   47   51   53   58   63 
LCS_GDT     T      54     T      54     21   22   40     8   18   19   20   21   22   24   28   30   32   34   39   41   44   46   48   54   60   63   67 
LCS_GDT     K      55     K      55     21   22   40     8   18   19   20   21   22   24   28   30   32   34   39   41   44   46   47   51   53   58   63 
LCS_GDT     R      56     R      56     21   22   40    12   18   19   20   21   22   24   28   30   32   34   39   41   44   46   47   51   53   57   61 
LCS_GDT     I      57     I      57     21   22   40    11   18   19   20   21   22   24   28   30   32   34   39   41   44   46   47   51   53   58   63 
LCS_GDT     F      58     F      58     21   22   40    12   18   19   20   21   22   24   28   30   32   34   39   42   46   50   54   57   62   66   69 
LCS_GDT     G      59     G      59     21   22   40    12   18   19   20   21   22   24   28   30   32   34   39   41   44   46   47   51   53   58   63 
LCS_GDT     G      60     G      60     21   22   40    12   18   19   20   21   22   24   28   30   32   34   39   41   44   46   47   51   53   58   63 
LCS_GDT     I      61     I      61     21   22   40    12   18   19   20   21   22   24   28   30   32   34   39   43   46   50   55   59   62   66   69 
LCS_GDT     L      62     L      62     21   22   40    12   18   19   20   21   22   24   28   30   32   36   42   45   46   52   55   59   62   66   69 
LCS_GDT     D      63     D      63     21   22   40    11   18   19   20   21   22   24   28   30   32   34   39   41   44   46   50   56   60   66   69 
LCS_GDT     L      64     L      64     21   22   40    12   18   19   20   21   22   24   28   30   32   34   39   41   44   50   54   59   62   66   69 
LCS_GDT     F      65     F      65     21   22   40    12   18   19   20   21   22   24   28   30   34   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     E      66     E      66     21   22   40    12   18   19   20   21   22   24   28   30   33   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     E      67     E      67     21   22   40    12   18   19   20   21   22   24   28   30   32   34   41   45   46   51   55   59   62   66   69 
LCS_GDT     G      68     G      68     21   22   40    12   18   19   20   21   22   24   28   30   32   34   39   41   45   51   55   59   62   66   69 
LCS_GDT     A      69     A      69     21   22   40    11   18   19   20   21   22   24   28   30   32   37   42   45   48   52   55   59   62   66   69 
LCS_GDT     A      70     A      70     21   22   40     9   16   19   20   21   22   24   28   31   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     E      71     E      71      3   22   40     1    3    5   10   21   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     G      72     G      72      3    7   38     3    3    6   11   21   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     K      73     K      73      4    7   38     3    5    7   13   21   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     K      74     K      74      4    7   36     3    6    8   13   21   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     V      75     V      75      4    7   36     4    5    8   13   16   21   25   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     T      76     T      76      4    7   36     4    5    5    7    8   12   16   18   21   34   36   42   45   48   52   55   59   62   66   69 
LCS_GDT     D      77     D      77      4    5   36     4    4    4    4    5    6   24   27   31   35   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     L      78     L      78      4    5   36     4    4    7   11   13   18   22   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     T      79     T      79      4    5   36     3    4    4    5    7    9   15   19   26   33   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     G      80     G      80      4    5   36     3    4    6    9   12   15   19   22   28   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     E      81     E      81      4   15   36     3    4    5    6    7   13   20   28   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     D      82     D      82     11   15   36    10   11   11   13   21   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     V      83     V      83     11   15   36    10   11   11   13   21   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     A      84     A      84     11   15   36    10   11   11   13   21   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     A      85     A      85     11   15   36    10   11   11   13   21   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     F      86     F      86     11   15   36    10   11   11   13   21   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     C      87     C      87     11   15   36    10   11   11   13   21   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     D      88     D      88     11   15   36    10   11   11   12   18   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     E      89     E      89     11   15   36    10   11   11   12   18   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     L      90     L      90     11   15   36    10   11   11   13   21   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     M      91     M      91     11   15   36    10   11   11   13   21   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     K      92     K      92     11   15   36     6   11   11   12   14   21   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     D      93     D      93      4   15   36     4    4    7   13   21   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     T      94     T      94      4   15   36     4    5   10   13   21   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     K      95     K      95      3   15   36     3    5    7   13   21   25   26   30   32   36   39   42   45   48   52   55   59   62   66   69 
LCS_GDT     T      96     T      96     14   15   36     7   14   14   14   14   16   17   23   27   34   39   42   45   46   52   55   59   62   66   69 
LCS_GDT     W      97     W      97     14   15   36    12   14   14   14   14   16   19   21   23   25   27   33   38   44   49   54   59   62   66   69 
LCS_GDT     M      98     M      98     14   15   36    12   14   14   14   14   16   19   21   23   25   28   32   38   44   48   54   59   62   66   69 
LCS_GDT     D      99     D      99     14   15   36    12   14   14   14   14   16   19   21   25   29   35   39   45   46   51   55   59   62   66   69 
LCS_GDT     K     100     K     100     14   15   36    12   14   14   14   14   16   19   21   23   25   34   37   43   46   49   55   59   62   66   69 
LCS_GDT     Y     101     Y     101     14   15   36    12   14   14   14   14   16   19   21   23   25   28   32   36   38   44   52   55   61   65   69 
LCS_GDT     R     102     R     102     14   15   36    12   14   14   14   14   16   19   21   23   25   28   32   36   39   47   52   56   61   66   69 
LCS_GDT     T     103     T     103     14   15   36    12   14   14   14   14   16   19   21   23   25   34   37   43   46   49   55   59   62   66   69 
LCS_GDT     K     104     K     104     14   15   36    12   14   14   14   14   16   19   21   23   25   28   32   36   38   46   52   55   61   66   69 
LCS_GDT     L     105     L     105     14   15   36    12   14   14   14   14   16   19   21   23   25   27   29   33   37   42   46   48   50   55   56 
LCS_GDT     N     106     N     106     14   15   36    12   14   14   14   14   16   19   21   23   25   27   32   36   38   42   52   55   60   64   69 
LCS_GDT     D     107     D     107     14   15   36    12   14   14   14   14   16   19   21   23   25   28   32   38   43   48   52   56   61   66   69 
LCS_GDT     S     108     S     108     14   15   36    12   14   14   14   14   16   19   21   23   25   27   29   33   37   42   46   48   50   55   56 
LCS_GDT     I     109     I     109     14   15   36    11   14   14   14   14   16   19   21   23   25   27   29   33   37   42   46   48   50   53   54 
LCS_GDT     G     110     G     110      4   15   34     3    3    4    5   11   13   17   20   23   24   26   28   29   32   35   43   48   49   50   54 
LCS_GDT     R     111     R     111      4    5   34     0    3    4    4    5    6    8   11   13   17   25   28   29   30   32   34   36   39   40   41 
LCS_GDT     D     112     D     112      3    5   34     0    3    3    3    5    9    9   20   20   24   26   28   29   30   32   34   35   36   37   39 
LCS_AVERAGE  LCS_A:  20.47  (  13.46   16.17   31.78 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     23     24     24     24     24     25     26     30     32     36     39     42     45     48     52     55     59     62     66     69 
GDT PERCENT_CA  20.54  21.43  21.43  21.43  21.43  22.32  23.21  26.79  28.57  32.14  34.82  37.50  40.18  42.86  46.43  49.11  52.68  55.36  58.93  61.61
GDT RMS_LOCAL    0.31   0.33   0.33   0.33   0.33   2.25   2.29   2.64   2.85   3.14   3.37   3.63   3.90   4.23   4.60   5.26   5.64   5.83   6.36   6.74
GDT RMS_ALL_CA  21.82  21.79  21.79  21.79  21.79  13.12  13.15  13.23  13.32  13.28  13.27  13.32  13.44  13.56  13.40  12.83  12.72  12.74  12.63  12.75

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         12.941
LGA    S       2      S       2          6.740
LGA    F       3      F       3          1.677
LGA    I       4      I       4          3.827
LGA    E       5      E       5          3.977
LGA    K       6      K       6          2.263
LGA    M       7      M       7          1.762
LGA    I       8      I       8          1.691
LGA    G       9      G       9          2.265
LGA    S      10      S      10          3.806
LGA    L      11      L      11          3.599
LGA    N      12      N      12          1.640
LGA    D      13      D      13          4.772
LGA    K      14      K      14          6.150
LGA    R      15      R      15          4.625
LGA    E      16      E      16          5.108
LGA    W      17      W      17          8.223
LGA    K      18      K      18          8.387
LGA    A      19      A      19          6.725
LGA    M      20      M      20          9.144
LGA    E      21      E      21         11.307
LGA    A      22      A      22          9.927
LGA    R      23      R      23          9.651
LGA    A      24      A      24         13.186
LGA    K      25      K      25         13.953
LGA    A      26      A      26         12.219
LGA    L      27      L      27          8.166
LGA    P      28      P      28         11.391
LGA    K      29      K      29         15.505
LGA    E      30      E      30         13.840
LGA    Y      31      Y      31         13.383
LGA    H      32      H      32         10.824
LGA    H      33      H      33          9.060
LGA    A      34      A      34          9.032
LGA    Y      35      Y      35          9.771
LGA    K      36      K      36          7.842
LGA    A      37      A      37          8.252
LGA    I      38      I      38         10.935
LGA    Q      39      Q      39         11.900
LGA    K      40      K      40         12.622
LGA    Y      41      Y      41         14.300
LGA    M      42      M      42         17.409
LGA    W      43      W      43         18.520
LGA    T      44      T      44         21.338
LGA    S      45      S      45         25.339
LGA    G      46      G      46         23.420
LGA    G      47      G      47         20.307
LGA    P      48      P      48         20.752
LGA    T      49      T      49         19.406
LGA    D      50      D      50         18.516
LGA    W      51      W      51         17.091
LGA    Q      52      Q      52         22.056
LGA    D      53      D      53         19.558
LGA    T      54      T      54         12.610
LGA    K      55      K      55         15.418
LGA    R      56      R      56         18.572
LGA    I      57      I      57         14.078
LGA    F      58      F      58          8.360
LGA    G      59      G      59         13.197
LGA    G      60      G      60         14.448
LGA    I      61      I      61          8.750
LGA    L      62      L      62          6.652
LGA    D      63      D      63         11.378
LGA    L      64      L      64         10.930
LGA    F      65      F      65          5.718
LGA    E      66      E      66          5.645
LGA    E      67      E      67          8.769
LGA    G      68      G      68          9.142
LGA    A      69      A      69          6.640
LGA    A      70      A      70          4.774
LGA    E      71      E      71          3.345
LGA    G      72      G      72          2.134
LGA    K      73      K      73          2.647
LGA    K      74      K      74          1.935
LGA    V      75      V      75          3.921
LGA    T      76      T      76          7.282
LGA    D      77      D      77          5.256
LGA    L      78      L      78          3.926
LGA    T      79      T      79          5.620
LGA    G      80      G      80          5.399
LGA    E      81      E      81          4.621
LGA    D      82      D      82          1.652
LGA    V      83      V      83          2.561
LGA    A      84      A      84          2.376
LGA    A      85      A      85          1.304
LGA    F      86      F      86          1.303
LGA    C      87      C      87          1.607
LGA    D      88      D      88          2.831
LGA    E      89      E      89          2.770
LGA    L      90      L      90          0.871
LGA    M      91      M      91          2.058
LGA    K      92      K      92          3.444
LGA    D      93      D      93          2.144
LGA    T      94      T      94          3.086
LGA    K      95      K      95          3.002
LGA    T      96      T      96          7.742
LGA    W      97      W      97         13.991
LGA    M      98      M      98         14.484
LGA    D      99      D      99          9.980
LGA    K     100      K     100         13.467
LGA    Y     101      Y     101         19.242
LGA    R     102      R     102         17.671
LGA    T     103      T     103         14.596
LGA    K     104      K     104         20.848
LGA    L     105      L     105         24.472
LGA    N     106      N     106         21.013
LGA    D     107      D     107         20.603
LGA    S     108      S     108         27.292
LGA    I     109      I     109         28.518
LGA    G     110      G     110         30.017
LGA    R     111      R     111         35.684
LGA    D     112      D     112         39.537

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  112  112    4.0     30    2.64    29.688    25.506     1.094

LGA_LOCAL      RMSD =  2.641  Number of atoms =   30  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 13.245  Number of atoms =  112 
Std_ALL_ATOMS  RMSD = 12.310  (standard rmsd on all 112 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.134138 * X  +  -0.956552 * Y  +   0.258873 * Z  +  20.360222
  Y_new =  -0.512174 * X  +   0.156716 * Y  +   0.844463 * Z  +  25.095186
  Z_new =  -0.848342 * X  +  -0.245863 * Y  +  -0.468900 * Z  +   1.248732 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.658664    0.482929  [ DEG:  -152.3302     27.6698 ]
  Theta =   1.012846    2.128746  [ DEG:    58.0318    121.9682 ]
  Phi   =  -1.314650    1.826942  [ DEG:   -75.3239    104.6761 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0283TS168_3                                  
REMARK     2: T0283.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0283TS168_3.T0283.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  112  112   4.0   30   2.64  25.506    12.31
REMARK  ---------------------------------------------------------- 
MOLECULE T0283TS168_3
PFRMAT TS
TARGET T0283
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1      32.754  16.387  18.562  1.00 25.00           C
ATOM      2  CA  SER     2      31.897  12.739  19.236  1.00 25.00           C
ATOM      3  CA  PHE     3      31.780   8.971  19.961  1.00 25.00           C
ATOM      4  CA  ILE     4      32.329   7.724  16.382  1.00 25.00           C
ATOM      5  CA  GLU     5      28.778   6.290  16.311  1.00 25.00           C
ATOM      6  CA  LYS     6      27.379   9.627  17.564  1.00 25.00           C
ATOM      7  CA  MET     7      29.333  11.493  14.849  1.00 25.00           C
ATOM      8  CA  ILE     8      27.969   9.099  12.188  1.00 25.00           C
ATOM      9  CA  GLY     9      24.407   9.656  13.478  1.00 25.00           C
ATOM     10  CA  SER    10      24.924  13.449  13.340  1.00 25.00           C
ATOM     11  CA  LEU    11      26.224  13.167   9.749  1.00 25.00           C
ATOM     12  CA  ASN    12      23.172  11.064   8.783  1.00 25.00           C
ATOM     13  CA  ASP    13      20.849  13.668  10.359  1.00 25.00           C
ATOM     14  CA  LYS    14      22.624  16.458   8.428  1.00 25.00           C
ATOM     15  CA  ARG    15      22.247  14.477   5.172  1.00 25.00           C
ATOM     16  CA  GLU    16      18.519  13.967   5.885  1.00 25.00           C
ATOM     17  CA  TRP    17      18.108  17.717   6.542  1.00 25.00           C
ATOM     18  CA  LYS    18      19.896  18.516   3.252  1.00 25.00           C
ATOM     19  CA  ALA    19      17.604  16.080   1.386  1.00 25.00           C
ATOM     20  CA  MET    20      14.528  17.719   2.975  1.00 25.00           C
ATOM     21  CA  GLU    21      15.805  21.177   1.938  1.00 25.00           C
ATOM     22  CA  ALA    22      16.354  19.929  -1.641  1.00 25.00           C
ATOM     23  CA  ARG    23      12.802  18.496  -1.711  1.00 25.00           C
ATOM     24  CA  ALA    24      11.405  21.834  -0.458  1.00 25.00           C
ATOM     25  CA  LYS    25      13.357  23.699  -3.173  1.00 25.00           C
ATOM     26  CA  ALA    26      11.994  21.306  -5.834  1.00 25.00           C
ATOM     27  CA  LEU    27      15.755  20.796  -6.535  1.00 25.00           C
ATOM     28  CA  PRO    28      19.311  19.475  -5.916  1.00 25.00           C
ATOM     29  CA  LYS    29      20.947  18.898  -2.498  1.00 25.00           C
ATOM     30  CA  GLU    30      21.313  22.708  -2.623  1.00 25.00           C
ATOM     31  CA  TYR    31      23.886  22.578   0.212  1.00 25.00           C
ATOM     32  CA  HIS    32      25.835  19.857  -1.650  1.00 25.00           C
ATOM     33  CA  HIS    33      25.796  21.976  -4.840  1.00 25.00           C
ATOM     34  CA  ALA    34      27.070  25.005  -2.873  1.00 25.00           C
ATOM     35  CA  TYR    35      29.877  22.878  -1.368  1.00 25.00           C
ATOM     36  CA  LYS    36      30.837  21.631  -4.859  1.00 25.00           C
ATOM     37  CA  ALA    37      30.907  25.235  -6.154  1.00 25.00           C
ATOM     38  CA  ILE    38      33.132  26.273  -3.214  1.00 25.00           C
ATOM     39  CA  GLN    39      35.499  23.353  -3.943  1.00 25.00           C
ATOM     40  CA  LYS    40      35.662  24.373  -7.631  1.00 25.00           C
ATOM     41  CA  TYR    41      36.448  27.983  -6.623  1.00 25.00           C
ATOM     42  CA  MET    42      39.223  26.753  -4.287  1.00 25.00           C
ATOM     43  CA  TRP    43      40.683  24.614  -7.108  1.00 25.00           C
ATOM     44  CA  THR    44      40.611  27.631  -9.467  1.00 25.00           C
ATOM     45  CA  SER    45      37.504  27.256 -11.590  1.00 25.00           C
ATOM     46  CA  GLY    46      35.728  30.607 -11.232  1.00 25.00           C
ATOM     47  CA  GLY    47      35.336  33.445  -8.691  1.00 25.00           C
ATOM     48  CA  PRO    48      32.912  35.674  -6.797  1.00 25.00           C
ATOM     49  CA  THR    49      32.287  35.099  -3.051  1.00 25.00           C
ATOM     50  CA  ASP    50      30.687  35.491   0.392  1.00 25.00           C
ATOM     51  CA  TRP    51      27.241  34.004  -0.205  1.00 25.00           C
ATOM     52  CA  GLN    52      27.215  35.464  -3.745  1.00 25.00           C
ATOM     53  CA  ASP    53      28.733  32.227  -5.117  1.00 25.00           C
ATOM     54  CA  THR    54      26.071  30.173  -3.285  1.00 25.00           C
ATOM     55  CA  LYS    55      23.316  32.405  -4.733  1.00 25.00           C
ATOM     56  CA  ARG    56      24.773  31.966  -8.247  1.00 25.00           C
ATOM     57  CA  ILE    57      24.860  28.168  -7.763  1.00 25.00           C
ATOM     58  CA  PHE    58      21.211  28.208  -6.602  1.00 25.00           C
ATOM     59  CA  GLY    59      20.231  30.273  -9.674  1.00 25.00           C
ATOM     60  CA  GLY    60      22.059  27.797 -11.953  1.00 25.00           C
ATOM     61  CA  ILE    61      20.243  24.873 -10.275  1.00 25.00           C
ATOM     62  CA  LEU    62      16.884  26.646 -10.762  1.00 25.00           C
ATOM     63  CA  ASP    63      17.705  27.236 -14.457  1.00 25.00           C
ATOM     64  CA  LEU    64      18.618  23.540 -14.870  1.00 25.00           C
ATOM     65  CA  PHE    65      15.318  22.515 -13.217  1.00 25.00           C
ATOM     66  CA  GLU    66      13.390  24.848 -15.562  1.00 25.00           C
ATOM     67  CA  GLU    67      15.198  23.345 -18.585  1.00 25.00           C
ATOM     68  CA  GLY    68      14.338  19.814 -17.375  1.00 25.00           C
ATOM     69  CA  ALA    69      10.667  20.826 -16.957  1.00 25.00           C
ATOM     70  CA  ALA    70      10.641  22.287 -20.497  1.00 25.00           C
ATOM     71  CA  GLU    71      11.136  26.011 -20.553  1.00 25.00           C
ATOM     72  CA  GLY    72      12.478  29.472 -19.919  1.00 25.00           C
ATOM     73  CA  LYS    73      15.193  31.101 -17.806  1.00 25.00           C
ATOM     74  CA  LYS    74      14.348  32.501 -14.370  1.00 25.00           C
ATOM     75  CA  VAL    75      13.299  32.481 -10.764  1.00 25.00           C
ATOM     76  CA  THR    76       9.603  33.291 -11.349  1.00 25.00           C
ATOM     77  CA  ASP    77       9.650  35.749  -8.414  1.00 25.00           C
ATOM     78  CA  LEU    78      12.788  37.423  -9.835  1.00 25.00           C
ATOM     79  CA  THR    79      15.809  39.790 -10.087  1.00 25.00           C
ATOM     80  CA  GLY    80      19.436  39.884  -8.860  1.00 25.00           C
ATOM     81  CA  GLU    81      20.038  41.956  -5.695  1.00 25.00           C
ATOM     82  CA  ASP    82      16.293  41.867  -4.895  1.00 25.00           C
ATOM     83  CA  VAL    83      16.256  38.068  -5.377  1.00 25.00           C
ATOM     84  CA  ALA    84      19.277  37.718  -3.049  1.00 25.00           C
ATOM     85  CA  ALA    85      17.529  39.881  -0.415  1.00 25.00           C
ATOM     86  CA  PHE    86      14.379  37.721  -0.697  1.00 25.00           C
ATOM     87  CA  CYS    87      16.485  34.551  -0.273  1.00 25.00           C
ATOM     88  CA  ASP    88      18.167  36.053   2.822  1.00 25.00           C
ATOM     89  CA  GLU    89      14.742  36.943   4.283  1.00 25.00           C
ATOM     90  CA  LEU    90      13.513  33.373   3.641  1.00 25.00           C
ATOM     91  CA  MET    91      16.629  31.965   5.363  1.00 25.00           C
ATOM     92  CA  LYS    92      16.040  34.265   8.368  1.00 25.00           C
ATOM     93  CA  ASP    93      12.392  33.117   8.562  1.00 25.00           C
ATOM     94  CA  THR    94      13.512  29.457   8.452  1.00 25.00           C
ATOM     95  CA  LYS    95      16.035  30.118  11.256  1.00 25.00           C
ATOM     96  CA  THR    96      13.302  31.791  13.353  1.00 25.00           C
ATOM     97  CA  TRP    97      10.992  28.790  12.780  1.00 25.00           C
ATOM     98  CA  MET    98      13.791  26.401  13.843  1.00 25.00           C
ATOM     99  CA  ASP    99      14.393  28.473  17.006  1.00 25.00           C
ATOM    100  CA  LYS   100      10.649  28.385  17.806  1.00 25.00           C
ATOM    101  CA  TYR   101      10.611  24.584  17.325  1.00 25.00           C
ATOM    102  CA  ARG   102      13.632  24.236  19.653  1.00 25.00           C
ATOM    103  CA  THR   103      11.885  26.398  22.286  1.00 25.00           C
ATOM    104  CA  LYS   104       8.735  24.238  22.004  1.00 25.00           C
ATOM    105  CA  LEU   105      10.840  21.068  22.429  1.00 25.00           C
ATOM    106  CA  ASN   106      12.523  22.570  25.523  1.00 25.00           C
ATOM    107  CA  ASP   107       9.096  23.461  26.985  1.00 25.00           C
ATOM    108  CA  SER   108       7.868  19.890  26.343  1.00 25.00           C
ATOM    109  CA  ILE   109      10.985  18.482  28.065  1.00 25.00           C
ATOM    110  CA  GLY   110       9.510  15.067  27.084  1.00 25.00           C
ATOM    111  CA  ARG   111       9.779  11.653  25.492  1.00 25.00           C
ATOM    112  CA  ASP   112      12.355   9.900  23.374  1.00 25.00           C
TER
END
