
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  112 (  112),  selected  112 , name T0283TS168_1
# Molecule2: number of CA atoms  112 (  888),  selected  112 , name T0283.pdb
# PARAMETERS: T0283TS168_1.T0283.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    47        24 - 70          4.93    27.30
  LONGEST_CONTINUOUS_SEGMENT:    47        25 - 71          4.87    27.24
  LCS_AVERAGE:     34.95

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26         2 - 27          1.82    16.38
  LCS_AVERAGE:     17.62

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    24         3 - 26          0.33    16.45
  LCS_AVERAGE:     14.08

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  112
LCS_GDT     M       1     M       1      3    4   29     3    3    3    3    5   10   12   18   22   27   32   36   42   45   53   55   58   59   61   64 
LCS_GDT     S       2     S       2      3   26   29     3    3    3    5    9   13   20   34   37   39   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     F       3     F       3     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     I       4     I       4     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     E       5     E       5     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     K       6     K       6     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     M       7     M       7     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     I       8     I       8     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     G       9     G       9     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     S      10     S      10     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     L      11     L      11     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     N      12     N      12     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     D      13     D      13     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     K      14     K      14     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     R      15     R      15     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     E      16     E      16     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     W      17     W      17     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     K      18     K      18     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     A      19     A      19     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     M      20     M      20     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     E      21     E      21     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     A      22     A      22     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   54   57   58   60   61   64 
LCS_GDT     R      23     R      23     24   26   29    23   25   26   26   28   31   32   34   37   40   43   45   51   53   54   57   58   60   61   64 
LCS_GDT     A      24     A      24     24   26   47    23   25   26   26   28   31   32   34   37   40   43   45   51   53   54   57   58   60   61   64 
LCS_GDT     K      25     K      25     24   26   47    23   25   26   26   28   31   32   34   37   40   43   45   51   53   54   57   58   60   61   64 
LCS_GDT     A      26     A      26     24   26   47    20   25   26   26   28   31   32   34   37   40   43   45   51   53   54   57   58   60   61   64 
LCS_GDT     L      27     L      27      3   26   47     3    3    4   11   15   19   27   30   37   39   43   45   51   53   54   57   58   60   61   64 
LCS_GDT     P      28     P      28     18   22   47    16   16   17   18   19   22   22   23   24   30   36   38   44   46   51   55   58   59   61   64 
LCS_GDT     K      29     K      29     18   22   47    16   16   17   18   19   22   22   24   27   33   40   42   44   48   49   51   57   59   59   61 
LCS_GDT     E      30     E      30     18   22   47    16   16   17   18   19   22   22   24   30   34   41   42   47   49   49   51   57   59   60   61 
LCS_GDT     Y      31     Y      31     18   22   47    16   16   17   18   19   22   22   24   30   34   41   44   47   49   52   55   57   59   60   64 
LCS_GDT     H      32     H      32     18   22   47    16   16   17   18   19   22   22   24   30   34   41   43   47   49   49   54   57   59   60   61 
LCS_GDT     H      33     H      33     18   22   47    16   16   17   18   19   22   22   25   33   37   41   44   47   49   49   54   57   59   60   61 
LCS_GDT     A      34     A      34     18   22   47    16   16   17   18   19   22   22   25   33   38   42   44   47   50   54   57   57   59   60   62 
LCS_GDT     Y      35     Y      35     18   22   47    16   16   17   18   19   22   22   25   33   38   42   44   47   52   54   57   57   59   60   62 
LCS_GDT     K      36     K      36     18   22   47    16   16   17   18   19   22   22   25   33   38   42   44   47   50   54   57   57   59   60   62 
LCS_GDT     A      37     A      37     18   22   47    16   16   17   18   19   22   22   27   35   38   42   44   47   51   54   57   57   59   60   62 
LCS_GDT     I      38     I      38     18   22   47    16   16   17   18   19   22   22   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     Q      39     Q      39     18   22   47    16   16   17   18   19   22   22   26   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     K      40     K      40     18   22   47    16   16   17   18   19   22   22   29   35   38   42   44   48   52   54   57   57   59   60   62 
LCS_GDT     Y      41     Y      41     18   22   47    16   16   17   18   19   22   25   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     M      42     M      42     18   22   47    16   16   17   18   19   22   22   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     W      43     W      43     18   22   47    16   16   17   18   19   22   22   27   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     T      44     T      44     18   22   47     3    6   17   18   19   22   22   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     S      45     S      45     18   22   47     3    3    6   17   19   23   26   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     G      46     G      46      4   22   47     3    4    4    6   18   22   22   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     G      47     G      47      4   22   47     3    4    4   17   19   22   22   25   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     P      48     P      48      4   24   47     3    4    4   13   19   22   25   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     T      49     T      49     17   24   47     3    7   11   18   21   23   25   29   35   38   42   44   47   51   54   57   57   59   60   62 
LCS_GDT     D      50     D      50     21   24   47     6   17   21   22   22   23   26   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     W      51     W      51     21   24   47     8   17   21   22   22   23   26   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     Q      52     Q      52     21   24   47    12   18   21   22   22   23   26   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     D      53     D      53     21   24   47    10   18   21   22   22   23   26   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     T      54     T      54     21   24   47     8   18   21   22   22   23   26   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     K      55     K      55     21   24   47     8   18   21   22   22   23   26   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     R      56     R      56     21   24   47    12   18   21   22   22   23   26   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     I      57     I      57     21   24   47    11   18   21   22   22   23   26   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     F      58     F      58     21   24   47    12   18   21   22   22   23   26   29   35   38   42   45   48   52   54   57   57   60   61   64 
LCS_GDT     G      59     G      59     21   24   47    12   18   21   22   22   23   26   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     G      60     G      60     21   24   47    12   18   21   22   22   23   26   29   35   38   42   45   48   52   54   57   57   59   60   64 
LCS_GDT     I      61     I      61     21   24   47    12   18   21   22   22   23   26   29   36   40   43   45   51   53   54   57   58   60   61   64 
LCS_GDT     L      62     L      62     21   24   47    12   18   21   22   22   23   26   29   35   39   43   45   51   53   54   57   58   60   61   64 
LCS_GDT     D      63     D      63     21   24   47    11   18   21   22   22   23   26   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     L      64     L      64     21   24   47    12   18   21   22   22   23   26   29   35   38   42   45   48   52   54   57   57   59   60   64 
LCS_GDT     F      65     F      65     21   24   47    12   18   21   22   22   23   26   29   35   38   42   45   48   52   54   57   57   59   61   64 
LCS_GDT     E      66     E      66     21   24   47    12   18   21   22   22   23   26   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     E      67     E      67     21   24   47    12   18   21   22   22   23   26   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     G      68     G      68     21   24   47    12   18   21   22   22   23   26   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     A      69     A      69     21   24   47    11   18   21   22   22   23   26   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     A      70     A      70     21   24   47     9   16   21   22   22   23   26   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     E      71     E      71      3   24   47     1    3   10   17   22   23   26   29   35   38   42   45   48   52   54   57   57   59   60   62 
LCS_GDT     G      72     G      72      4    6   46     0    4    5    7    9   12   16   22   27   35   38   45   48   52   54   57   57   59   60   62 
LCS_GDT     K      73     K      73      4    6   42     3    4    5   25   25   25   25   26   32   35   40   45   48   52   54   57   57   59   60   63 
LCS_GDT     K      74     K      74      5    6   41    11   25   26   26   28   31   32   33   36   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     V      75     V      75      5    6   41     4    5    6    7   28   31   32   34   37   40   43   45   51   53   54   57   58   60   61   64 
LCS_GDT     T      76     T      76      5    6   41     4    5    5    6   28   31   32   34   37   40   43   45   51   53   54   57   58   60   61   64 
LCS_GDT     D      77     D      77      5    6   41     4    5   26   26   28   31   32   32   34   37   43   45   51   53   54   57   58   60   61   64 
LCS_GDT     L      78     L      78      5    6   41     4    5    5   26   28   31   32   34   37   40   43   45   51   53   54   57   58   60   61   64 
LCS_GDT     T      79     T      79      4    6   40     1    3    5    6   12   16   18   21   31   36   43   45   51   53   54   57   58   60   61   64 
LCS_GDT     G      80     G      80      4    6   39     3    4    6    9   12   16   21   25   27   36   36   38   42   45   52   55   58   60   61   64 
LCS_GDT     E      81     E      81      4   15   35     3    4    5    6    9   13   16   18   25   30   36   38   42   45   49   53   55   58   60   64 
LCS_GDT     D      82     D      82     11   15   34    10   11   11   12   13   14   17   22   27   31   36   43   48   52   54   57   57   59   60   62 
LCS_GDT     V      83     V      83     11   15   34    10   11   11   12   13   14   18   25   27   32   38   45   48   52   54   57   57   59   60   64 
LCS_GDT     A      84     A      84     11   15   34    10   11   11   12   13   14   22   25   31   35   38   45   48   52   54   57   57   59   60   64 
LCS_GDT     A      85     A      85     11   15   34    10   11   11   12   17   23   26   29   35   38   42   45   48   52   54   57   58   60   61   64 
LCS_GDT     F      86     F      86     11   15   34    10   11   11   12   18   22   25   29   35   38   42   44   48   52   54   57   58   60   61   64 
LCS_GDT     C      87     C      87     11   15   34    10   17   21   22   22   23   26   29   35   38   43   45   48   53   54   57   58   60   61   64 
LCS_GDT     D      88     D      88     11   15   34    10   11   11   12   13   23   23   30   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     E      89     E      89     11   15   34    10   11   15   18   19   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     L      90     L      90     11   15   34    10   11   11   12   22   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     M      91     M      91     11   15   34    10   11   11   12   15   15   29   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     K      92     K      92     11   15   34     6   11   11   12   15   16   29   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     D      93     D      93      4   15   34     4    4    6   12   13   14   25   33   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     T      94     T      94      4   15   34     4    5   10   12   13   14   16   29   36   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     K      95     K      95      3   15   34     3    4    5    9   13   15   17   18   22   25   30   41   51   53   53   55   58   60   61   64 
LCS_GDT     T      96     T      96     14   15   34     7   14   14   21   27   31   32   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     W      97     W      97     14   15   34    12   14   14   14   14   16   20   22   25   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     M      98     M      98     14   15   34    12   14   14   14   15   16   20   22   23   28   42   45   51   53   53   55   58   60   61   64 
LCS_GDT     D      99     D      99     14   15   34    12   14   14   14   15   16   20   29   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     K     100     K     100     14   15   34    12   14   14   14   15   16   25   34   37   40   43   45   51   53   53   55   58   60   61   64 
LCS_GDT     Y     101     Y     101     14   15   34    12   14   14   14   15   16   20   22   23   26   27   35   51   53   53   55   58   60   61   64 
LCS_GDT     R     102     R     102     14   15   34    12   14   14   14   15   16   20   22   23   26   27   31   40   53   53   55   58   60   61   64 
LCS_GDT     T     103     T     103     14   15   34    12   14   14   14   15   16   20   22   23   28   39   45   51   53   53   55   58   60   61   64 
LCS_GDT     K     104     K     104     14   15   34    12   14   14   14   15   16   20   22   23   26   33   45   51   53   53   55   58   60   61   64 
LCS_GDT     L     105     L     105     14   15   34    12   14   14   14   15   16   20   22   23   26   27   29   32   35   38   55   56   60   61   64 
LCS_GDT     N     106     N     106     14   15   34    12   14   14   14   15   16   20   22   23   26   27   29   40   48   49   55   56   60   61   64 
LCS_GDT     D     107     D     107     14   15   34    12   14   14   14   15   16   20   22   23   26   27   31   51   53   53   55   58   60   61   64 
LCS_GDT     S     108     S     108     14   15   34    12   14   14   14   15   16   20   22   23   26   27   29   32   35   48   55   56   60   61   64 
LCS_GDT     I     109     I     109     14   15   34    11   14   14   14   15   16   20   22   23   26   27   29   32   35   35   42   45   52   60   63 
LCS_GDT     G     110     G     110      4   15   34     3    4    4    7   11   13   18   20   22   24   27   29   32   35   35   38   39   40   43   46 
LCS_GDT     R     111     R     111      4    5   34     3    4    4    7    9   13   17   20   22   24   26   29   30   35   35   38   39   39   40   42 
LCS_GDT     D     112     D     112      3    5   34     3    3    3    6    9   10   13   18   21   24   26   29   30   35   35   38   39   39   40   42 
LCS_AVERAGE  LCS_A:  22.22  (  14.08   17.62   34.95 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     23     25     26     26     28     31     32     34     37     40     43     45     51     53     54     57     58     60     61     64 
GDT PERCENT_CA  20.54  22.32  23.21  23.21  25.00  27.68  28.57  30.36  33.04  35.71  38.39  40.18  45.54  47.32  48.21  50.89  51.79  53.57  54.46  57.14
GDT RMS_LOCAL    0.31   0.51   0.58   0.58   0.94   1.36   1.49   2.42   2.87   3.13   3.37   3.61   4.49   4.71   5.17   5.44   5.26   5.75   5.77   6.09
GDT RMS_ALL_CA  16.45  15.91  15.82  15.82  15.55  15.33  15.29  15.11  15.06  14.97  14.99  14.92  14.73  14.66  25.38  25.76  14.52  14.39  14.50  14.49

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          7.723
LGA    S       2      S       2          3.832
LGA    F       3      F       3          3.424
LGA    I       4      I       4          3.390
LGA    E       5      E       5          3.102
LGA    K       6      K       6          2.947
LGA    M       7      M       7          2.959
LGA    I       8      I       8          3.037
LGA    G       9      G       9          2.754
LGA    S      10      S      10          2.799
LGA    L      11      L      11          2.780
LGA    N      12      N      12          2.883
LGA    D      13      D      13          2.766
LGA    K      14      K      14          2.516
LGA    R      15      R      15          2.758
LGA    E      16      E      16          3.313
LGA    W      17      W      17          3.079
LGA    K      18      K      18          2.835
LGA    A      19      A      19          3.386
LGA    M      20      M      20          3.682
LGA    E      21      E      21          3.197
LGA    A      22      A      22          3.173
LGA    R      23      R      23          3.743
LGA    A      24      A      24          3.989
LGA    K      25      K      25          3.500
LGA    A      26      A      26          3.830
LGA    L      27      L      27          4.718
LGA    P      28      P      28          9.882
LGA    K      29      K      29         16.065
LGA    E      30      E      30         16.697
LGA    Y      31      Y      31         11.112
LGA    H      32      H      32         14.545
LGA    H      33      H      33         19.513
LGA    A      34      A      34         16.217
LGA    Y      35      Y      35         15.143
LGA    K      36      K      36         21.460
LGA    A      37      A      37         22.509
LGA    I      38      I      38         18.694
LGA    Q      39      Q      39         22.841
LGA    K      40      K      40         27.634
LGA    Y      41      Y      41         24.915
LGA    M      42      M      42         24.137
LGA    W      43      W      43         30.163
LGA    T      44      T      44         30.839
LGA    S      45      S      45         29.562
LGA    G      46      G      46         28.593
LGA    G      47      G      47         27.364
LGA    P      48      P      48         27.645
LGA    T      49      T      49         29.165
LGA    D      50      D      50         29.221
LGA    W      51      W      51         26.381
LGA    Q      52      Q      52         26.407
LGA    D      53      D      53         22.924
LGA    T      54      T      54         19.229
LGA    K      55      K      55         18.456
LGA    R      56      R      56         18.288
LGA    I      57      I      57         13.346
LGA    F      58      F      58         10.794
LGA    G      59      G      59         12.769
LGA    G      60      G      60         11.352
LGA    I      61      I      61          5.500
LGA    L      62      L      62          6.821
LGA    D      63      D      63         12.059
LGA    L      64      L      64         10.279
LGA    F      65      F      65          8.601
LGA    E      66      E      66         12.417
LGA    E      67      E      67         16.654
LGA    G      68      G      68         16.125
LGA    A      69      A      69         16.000
LGA    A      70      A      70         20.294
LGA    E      71      E      71         21.019
LGA    G      72      G      72         16.191
LGA    K      73      K      73         10.886
LGA    K      74      K      74          5.046
LGA    V      75      V      75          2.695
LGA    T      76      T      76          3.760
LGA    D      77      D      77          5.897
LGA    L      78      L      78          3.732
LGA    T      79      T      79          6.173
LGA    G      80      G      80         10.151
LGA    E      81      E      81         12.996
LGA    D      82      D      82         15.388
LGA    V      83      V      83         13.252
LGA    A      84      A      84         11.621
LGA    A      85      A      85          9.052
LGA    F      86      F      86          8.047
LGA    C      87      C      87          6.455
LGA    D      88      D      88          4.610
LGA    E      89      E      89          2.449
LGA    L      90      L      90          1.967
LGA    M      91      M      91          3.624
LGA    K      92      K      92          3.801
LGA    D      93      D      93          4.564
LGA    T      94      T      94          5.474
LGA    K      95      K      95          6.791
LGA    T      96      T      96          1.930
LGA    W      97      W      97          5.567
LGA    M      98      M      98          7.054
LGA    D      99      D      99          5.085
LGA    K     100      K     100          3.568
LGA    Y     101      Y     101          8.602
LGA    R     102      R     102         10.263
LGA    T     103      T     103          7.478
LGA    K     104      K     104          8.084
LGA    L     105      L     105         13.037
LGA    N     106      N     106         13.192
LGA    D     107      D     107         10.349
LGA    S     108      S     108         13.127
LGA    I     109      I     109         16.824
LGA    G     110      G     110         22.508
LGA    R     111      R     111         29.384
LGA    D     112      D     112         31.354

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  112  112    4.0     34    2.42    31.696    28.167     1.350

LGA_LOCAL      RMSD =  2.419  Number of atoms =   34  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 14.599  Number of atoms =  112 
Std_ALL_ATOMS  RMSD = 13.820  (standard rmsd on all 112 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.781075 * X  +   0.622995 * Y  +  -0.042431 * Z  +  17.940250
  Y_new =  -0.101250 * X  +  -0.059304 * Y  +   0.993092 * Z  +  24.919584
  Z_new =   0.616175 * X  +   0.779975 * Y  +   0.109399 * Z  +   0.928042 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.431445   -1.710147  [ DEG:    82.0158    -97.9842 ]
  Theta =  -0.663876   -2.477716  [ DEG:   -38.0373   -141.9627 ]
  Phi   =  -3.012682    0.128910  [ DEG:  -172.6140      7.3860 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0283TS168_1                                  
REMARK     2: T0283.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0283TS168_1.T0283.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  112  112   4.0   34   2.42  28.167    13.82
REMARK  ---------------------------------------------------------- 
MOLECULE T0283TS168_1
PFRMAT TS
TARGET T0283
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      33.184   9.477  20.850  1.00 25.00           C
ATOM      2  CA  SER     2      29.785  11.222  20.617  1.00 25.00           C
ATOM      3  CA  PHE     3      27.157   8.747  21.949  1.00 25.00           C
ATOM      4  CA  ILE     4      25.832   6.496  19.148  1.00 25.00           C
ATOM      5  CA  GLU     5      22.775   8.767  18.736  1.00 25.00           C
ATOM      6  CA  LYS     6      25.052  11.840  18.551  1.00 25.00           C
ATOM      7  CA  MET     7      27.209  10.114  15.899  1.00 25.00           C
ATOM      8  CA  ILE     8      24.073   9.251  13.876  1.00 25.00           C
ATOM      9  CA  GLY     9      22.897  12.889  14.102  1.00 25.00           C
ATOM     10  CA  SER    10      26.332  14.099  12.918  1.00 25.00           C
ATOM     11  CA  LEU    11      26.206  11.652   9.974  1.00 25.00           C
ATOM     12  CA  ASN    12      22.705  12.903   9.052  1.00 25.00           C
ATOM     13  CA  ASP    13      23.938  16.527   9.187  1.00 25.00           C
ATOM     14  CA  LYS    14      26.901  15.629   6.934  1.00 25.00           C
ATOM     15  CA  ARG    15      24.530  13.928   4.452  1.00 25.00           C
ATOM     16  CA  GLU    16      22.281  17.027   4.439  1.00 25.00           C
ATOM     17  CA  TRP    17      25.323  19.263   3.796  1.00 25.00           C
ATOM     18  CA  LYS    18      26.407  16.998   0.904  1.00 25.00           C
ATOM     19  CA  ALA    19      22.879  17.160  -0.577  1.00 25.00           C
ATOM     20  CA  MET    20      22.912  20.981  -0.300  1.00 25.00           C
ATOM     21  CA  GLU    21      26.319  21.102  -2.043  1.00 25.00           C
ATOM     22  CA  ALA    22      24.994  18.851  -4.844  1.00 25.00           C
ATOM     23  CA  ARG    23      21.937  21.122  -5.256  1.00 25.00           C
ATOM     24  CA  ALA    24      24.215  24.196  -5.441  1.00 25.00           C
ATOM     25  CA  LYS    25      26.371  22.468  -8.094  1.00 25.00           C
ATOM     26  CA  ALA    26      23.236  21.607 -10.116  1.00 25.00           C
ATOM     27  CA  LEU    27      20.586  18.958  -9.644  1.00 25.00           C
ATOM     28  CA  PRO    28      18.009  16.588 -11.268  1.00 25.00           C
ATOM     29  CA  LYS    29      17.556  14.056  -8.423  1.00 25.00           C
ATOM     30  CA  GLU    30      18.320  16.479  -5.557  1.00 25.00           C
ATOM     31  CA  TYR    31      16.198  19.184  -7.245  1.00 25.00           C
ATOM     32  CA  HIS    32      13.316  16.698  -7.660  1.00 25.00           C
ATOM     33  CA  HIS    33      13.583  15.732  -3.964  1.00 25.00           C
ATOM     34  CA  ALA    34      13.518  19.430  -2.967  1.00 25.00           C
ATOM     35  CA  TYR    35      10.417  19.987  -5.146  1.00 25.00           C
ATOM     36  CA  LYS    36       8.704  16.972  -3.521  1.00 25.00           C
ATOM     37  CA  ALA    37       9.544  18.338  -0.043  1.00 25.00           C
ATOM     38  CA  ILE    38       8.110  21.755  -1.011  1.00 25.00           C
ATOM     39  CA  GLN    39       4.912  20.078  -2.288  1.00 25.00           C
ATOM     40  CA  LYS    40       4.601  18.119   0.987  1.00 25.00           C
ATOM     41  CA  TYR    41       5.051  21.352   2.991  1.00 25.00           C
ATOM     42  CA  MET    42       2.351  23.064   0.883  1.00 25.00           C
ATOM     43  CA  TRP    43      -0.017  20.113   1.476  1.00 25.00           C
ATOM     44  CA  THR    44       0.650  20.302   5.242  1.00 25.00           C
ATOM     45  CA  SER    45      -0.360  23.906   5.058  1.00 25.00           C
ATOM     46  CA  GLY    46      -2.377  24.741   1.890  1.00 25.00           C
ATOM     47  CA  GLY    47      -2.068  25.949  -1.703  1.00 25.00           C
ATOM     48  CA  PRO    48      -1.717  24.734  -5.291  1.00 25.00           C
ATOM     49  CA  THR    49       1.245  26.174  -7.074  1.00 25.00           C
ATOM     50  CA  ASP    50       1.634  22.653  -8.407  1.00 25.00           C
ATOM     51  CA  TRP    51       4.135  20.066  -9.720  1.00 25.00           C
ATOM     52  CA  GLN    52       4.896  22.346 -12.702  1.00 25.00           C
ATOM     53  CA  ASP    53       5.410  25.312 -10.334  1.00 25.00           C
ATOM     54  CA  THR    54       7.777  23.212  -8.177  1.00 25.00           C
ATOM     55  CA  LYS    55       9.748  22.185 -11.297  1.00 25.00           C
ATOM     56  CA  ARG    56      10.003  25.852 -12.372  1.00 25.00           C
ATOM     57  CA  ILE    57      11.250  26.815  -8.882  1.00 25.00           C
ATOM     58  CA  PHE    58      13.869  24.024  -9.020  1.00 25.00           C
ATOM     59  CA  GLY    59      15.018  25.240 -12.466  1.00 25.00           C
ATOM     60  CA  GLY    60      15.307  28.819 -11.132  1.00 25.00           C
ATOM     61  CA  ILE    61      17.364  27.569  -8.153  1.00 25.00           C
ATOM     62  CA  LEU    62      19.667  25.635 -10.523  1.00 25.00           C
ATOM     63  CA  ASP    63      20.117  28.766 -12.681  1.00 25.00           C
ATOM     64  CA  LEU    64      20.964  30.823  -9.564  1.00 25.00           C
ATOM     65  CA  PHE    65      23.526  28.188  -8.490  1.00 25.00           C
ATOM     66  CA  GLU    66      25.096  28.256 -11.983  1.00 25.00           C
ATOM     67  CA  GLU    67      25.295  32.078 -11.846  1.00 25.00           C
ATOM     68  CA  GLY    68      26.963  31.892  -8.403  1.00 25.00           C
ATOM     69  CA  ALA    69      29.491  29.344  -9.738  1.00 25.00           C
ATOM     70  CA  ALA    70      30.251  31.625 -12.720  1.00 25.00           C
ATOM     71  CA  GLU    71      28.943  35.021 -13.886  1.00 25.00           C
ATOM     72  CA  GLY    72      25.555  36.828 -13.476  1.00 25.00           C
ATOM     73  CA  LYS    73      21.939  35.691 -13.074  1.00 25.00           C
ATOM     74  CA  LYS    74      18.199  36.305 -12.719  1.00 25.00           C
ATOM     75  CA  VAL    75      15.787  34.459 -10.465  1.00 25.00           C
ATOM     76  CA  THR    76      17.308  36.714  -7.770  1.00 25.00           C
ATOM     77  CA  ASP    77      14.914  39.539  -8.747  1.00 25.00           C
ATOM     78  CA  LEU    78      11.947  37.126  -8.547  1.00 25.00           C
ATOM     79  CA  THR    79       8.552  35.618  -9.434  1.00 25.00           C
ATOM     80  CA  GLY    80       4.956  34.631  -8.762  1.00 25.00           C
ATOM     81  CA  GLU    81       5.132  37.501  -6.233  1.00 25.00           C
ATOM     82  CA  ASP    82       3.969  35.149  -3.443  1.00 25.00           C
ATOM     83  CA  VAL    83       6.638  32.594  -4.454  1.00 25.00           C
ATOM     84  CA  ALA    84       9.314  35.333  -4.404  1.00 25.00           C
ATOM     85  CA  ALA    85       8.157  36.436  -0.923  1.00 25.00           C
ATOM     86  CA  PHE    86       8.322  32.813   0.306  1.00 25.00           C
ATOM     87  CA  CYS    87      11.863  32.467  -1.112  1.00 25.00           C
ATOM     88  CA  ASP    88      12.908  35.709   0.639  1.00 25.00           C
ATOM     89  CA  GLU    89      11.445  34.427   3.938  1.00 25.00           C
ATOM     90  CA  LEU    90      13.349  31.130   3.529  1.00 25.00           C
ATOM     91  CA  MET    91      16.590  33.055   2.860  1.00 25.00           C
ATOM     92  CA  LYS    92      16.002  35.184   5.989  1.00 25.00           C
ATOM     93  CA  ASP    93      15.404  32.018   8.059  1.00 25.00           C
ATOM     94  CA  THR    94      18.641  30.488   6.700  1.00 25.00           C
ATOM     95  CA  LYS    95      20.554  33.684   7.589  1.00 25.00           C
ATOM     96  CA  THR    96      19.093  33.603  11.128  1.00 25.00           C
ATOM     97  CA  TRP    97      20.128  29.934  11.497  1.00 25.00           C
ATOM     98  CA  MET    98      23.670  30.788  10.317  1.00 25.00           C
ATOM     99  CA  ASP    99      23.846  33.660  12.846  1.00 25.00           C
ATOM    100  CA  LYS   100      22.684  31.307  15.636  1.00 25.00           C
ATOM    101  CA  TYR   101      25.351  28.752  14.626  1.00 25.00           C
ATOM    102  CA  ARG   102      28.028  31.491  14.676  1.00 25.00           C
ATOM    103  CA  THR   103      26.870  32.594  18.157  1.00 25.00           C
ATOM    104  CA  LYS   104      27.036  28.970  19.385  1.00 25.00           C
ATOM    105  CA  LEU   105      30.577  28.625  17.967  1.00 25.00           C
ATOM    106  CA  ASN   106      31.622  31.867  19.718  1.00 25.00           C
ATOM    107  CA  ASP   107      30.158  30.585  23.017  1.00 25.00           C
ATOM    108  CA  SER   108      32.062  27.287  22.609  1.00 25.00           C
ATOM    109  CA  ILE   109      35.304  29.213  21.939  1.00 25.00           C
ATOM    110  CA  GLY   110      36.818  26.571  19.632  1.00 25.00           C
ATOM    111  CA  ARG   111      40.309  25.513  18.397  1.00 25.00           C
ATOM    112  CA  ASP   112      39.271  22.289  16.645  1.00 25.00           C
TER
END
