
PFRMAT SS
TARGET T0127
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
M C 0.99
T C 0.85
T C 0.48
A H 0.45
V H 0.68
A H 0.60
R H 0.54
L H 0.28
Q C 0.11
P C 0.06
S C 0.08
A C 0.35
S C 0.38
G C 0.50
A C 0.46
K C 0.45
T C 0.59
R C 0.81
P C 0.58
V C 0.82
F C 0.61
P C 0.77
F H 0.37
S H 0.71
A H 0.75
I H 0.67
V C 0.08
G C 0.52
Q H 0.05
E H 0.91
D H 0.96
M H 0.96
K H 0.96
L H 0.96
A H 0.96
L H 0.97
L H 0.97
L H 0.95
T H 0.92
A H 0.85
V H 0.53
D C 0.15
P C 0.56
G C 0.82
I C 0.86
G C 0.86
G C 0.12
V E 0.74
L E 0.94
V E 0.90
F E 0.82
G C 0.79
D C 0.92
R C 0.91
G C 0.90
T C 0.94
G C 0.65
K H 0.81
S H 0.91
T H 0.94
A H 0.96
V H 0.95
R H 0.95
A H 0.96
L H 0.95
A H 0.91
A H 0.84
L H 0.72
L C 0.83
P C 0.92
E C 0.78
I H 0.03
E H 0.14
A H 0.19
V C 0.19
E C 0.42
G C 0.60
C C 0.73
P C 0.47
V C 0.19
S C 0.13
S C 0.37
P C 0.64
N C 0.51
V H 0.11
E H 0.36
M H 0.35
I H 0.04
P H 0.01
D H 0.03
W C 0.01
A C 0.01
T C 0.09
V C 0.04
L C 0.05
S C 0.23
T C 0.58
N C 0.58
V E 0.07
I E 0.52
R E 0.55
K E 0.10
P C 0.24
T C 0.77
P C 0.38
V C 0.33
V C 0.10
D C 0.10
L C 0.74
P C 0.82
L C 0.40
G C 0.34
V C 0.10
S C 0.41
E C 0.04
D C 0.14
R C 0.11
V C 0.26
V C 0.32
G C 0.54
A C 0.34
L C 0.32
D C 0.03
I H 0.21
E H 0.25
R H 0.25
A H 0.24
I C 0.03
S C 0.34
K C 0.49
G C 0.77
E C 0.48
K C 0.44
A C 0.44
F C 0.36
E C 0.61
P C 0.81
G C 0.72
L E 0.46
L E 0.68
A E 0.72
R E 0.53
A C 0.23
N C 0.67
R C 0.88
G C 0.82
Y E 0.77
L E 0.96
Y E 0.93
I E 0.81
D C 0.19
E C 0.74
C C 0.43
N C 0.71
L C 0.61
L C 0.89
E C 0.93
D H 0.89
H H 0.89
I H 0.94
V H 0.96
D H 0.96
L H 0.93
L H 0.96
L H 0.92
D H 0.92
V H 0.83
A H 0.65
Q H 0.69
S C 0.65
G C 0.91
E C 0.09
N E 0.77
V E 0.95
V E 0.90
E E 0.77
R C 0.02
D C 0.77
G C 0.71
L E 0.53
S E 0.76
I E 0.89
R E 0.89
H E 0.51
P C 0.46
A C 0.88
R C 0.55
F E 0.68
V E 0.95
L E 0.94
V E 0.93
G E 0.54
S E 0.14
G C 0.58
N C 0.89
P C 0.82
E C 0.82
E C 0.79
G C 0.80
D C 0.87
L C 0.86
R C 0.93
P H 0.80
Q H 0.46
L H 0.67
L H 0.85
D H 0.29
R H 0.24
F C 0.42
G C 0.61
L E 0.31
S E 0.85
V E 0.92
E E 0.77
V C 0.79
L C 0.90
S C 0.87
P C 0.89
R C 0.91
D C 0.97
V C 0.93
E H 0.45
T H 0.68
R H 0.93
V H 0.96
E H 0.96
V H 0.97
I H 0.96
R H 0.96
R H 0.95
R H 0.95
D H 0.90
T H 0.89
Y H 0.85
D H 0.65
A H 0.67
D C 0.69
P H 0.06
K H 0.79
A H 0.85
F H 0.85
L H 0.86
E H 0.85
E H 0.55
W H 0.34
R H 0.08
P H 0.29
K H 0.75
D H 0.90
M H 0.91
D H 0.94
I H 0.96
R H 0.96
N H 0.97
Q H 0.96
I H 0.96
L H 0.96
E H 0.96
A H 0.94
R H 0.94
E H 0.85
R H 0.53
L H 0.13
P H 0.03
K H 0.08
V C 0.41
E E 0.17
A E 0.38
P C 0.83
N H 0.93
T H 0.97
A H 0.96
L H 0.96
Y H 0.93
D H 0.95
C H 0.98
A H 0.97
A H 0.98
L H 0.98
C H 0.96
I H 0.94
A H 0.79
L H 0.27
G C 0.78
S C 0.92
D C 0.90
G C 0.91
L C 0.77
R H 0.12
G H 0.86
E H 0.92
L H 0.93
T H 0.96
L H 0.96
L H 0.97
R H 0.97
S H 0.96
A H 0.96
R H 0.96
A H 0.95
L H 0.96
A H 0.94
A H 0.93
L H 0.80
E C 0.24
G C 0.91
A C 0.91
T C 0.67
A E 0.52
V E 0.12
G C 0.56
R H 0.81
D H 0.82
H H 0.89
L H 0.95
K H 0.93
R H 0.92
V H 0.91
A H 0.62
T H 0.87
M H 0.69
A H 0.25
L C 0.37
S C 0.50
H C 0.30
R C 0.08
L C 0.19
R C 0.16
R C 0.06
D C 0.69
P H 0.05
L H 0.70
D H 0.78
E H 0.73
A H 0.63
G H 0.62
S C 0.43
T C 0.72
A C 0.21
R H 0.45
V H 0.87
A H 0.91
R H 0.93
T H 0.96
V H 0.95
E H 0.83
E H 0.70
T C 0.19
L C 0.86
P C 0.97
END

