
PFRMAT SS
TARGET T0127
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0127.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 170.611
METHOD
MODEL 1
M C 0.913
T H 0.592
T H 0.615
A H 0.622
V H 0.502
A C 0.493
R C 0.597
L C 0.593
Q C 0.642
P C 0.637
S C 0.687
A C 0.603
S C 0.540
G H 0.664
A H 0.730
K H 0.702
T H 0.611
R C 0.486
P C 0.779
V H 0.520
F H 0.532
P H 0.562
F H 0.533
S H 0.626
A H 0.566
I H 0.522
V C 0.454
G C 0.677
Q H 0.853
E H 0.908
D H 0.947
M H 0.989
K H 0.993
L H 0.997
A H 0.998
L H 0.998
L H 0.997
L H 0.994
T H 0.989
A H 0.969
V H 0.901
D C 0.683
P C 0.936
G C 0.948
I C 0.882
G C 0.797
G C 0.523
V E 0.940
L E 0.981
V E 0.988
F E 0.947
G E 0.595
D C 0.841
R C 0.919
G C 0.847
T C 0.705
G H 0.592
K H 0.834
S H 0.955
T H 0.984
A H 0.990
V H 0.994
R H 0.996
A H 0.992
L H 0.980
A H 0.962
A H 0.899
L H 0.754
L C 0.599
P C 0.930
E C 0.805
I C 0.689
E C 0.516
A E 0.374
V E 0.378
E E 0.378
G E 0.409
C E 0.437
P C 0.391
V C 0.463
S C 0.531
S C 0.586
P C 0.660
N C 0.676
V C 0.675
E C 0.636
M C 0.640
I C 0.628
P C 0.622
D C 0.613
W C 0.653
A C 0.592
T C 0.536
V C 0.558
L C 0.581
S C 0.706
T C 0.748
N C 0.722
V C 0.543
I C 0.458
R C 0.416
K C 0.487
P C 0.592
T C 0.690
P C 0.814
V C 0.504
V C 0.496
D C 0.524
L C 0.700
P C 0.804
L C 0.720
G C 0.615
V C 0.485
S H 0.445
E H 0.493
D H 0.499
R H 0.482
V H 0.394
V C 0.422
G C 0.588
A C 0.626
L C 0.702
D C 0.523
I C 0.342
E C 0.396
R H 0.414
A C 0.477
I C 0.532
S C 0.653
K C 0.771
G C 0.878
E C 0.687
K C 0.501
A E 0.509
F E 0.449
E C 0.580
P C 0.643
G C 0.644
L C 0.445
L H 0.412
A H 0.524
R H 0.537
A C 0.495
N C 0.745
R C 0.943
G C 0.887
Y E 0.912
L E 0.985
Y E 0.989
I E 0.943
D E 0.568
E C 0.829
C C 0.820
N C 0.786
L C 0.817
L C 0.887
E C 0.956
D H 0.962
H H 0.983
I H 0.993
V H 0.990
D H 0.995
L H 0.995
L H 0.992
L H 0.988
D H 0.980
V H 0.964
A H 0.899
Q H 0.818
S H 0.510
G C 0.972
E C 0.777
N E 0.699
V E 0.808
V E 0.916
E E 0.825
R E 0.672
D C 0.756
G C 0.928
L E 0.513
S E 0.725
I E 0.722
R E 0.617
H C 0.564
P C 0.653
A C 0.725
R C 0.648
F E 0.880
V E 0.974
L E 0.994
V E 0.995
G E 0.965
S E 0.783
G C 0.673
N C 0.918
P C 0.868
E C 0.830
E C 0.748
G C 0.845
D C 0.903
L C 0.935
R C 0.954
P H 0.892
Q H 0.910
L H 0.937
L H 0.864
D H 0.831
R H 0.725
F C 0.708
G C 0.698
L E 0.537
S E 0.735
V E 0.805
E E 0.728
V C 0.494
L C 0.771
S C 0.897
P C 0.908
R C 0.880
D H 0.618
V H 0.825
E H 0.920
T H 0.943
R H 0.964
V H 0.974
E H 0.980
V H 0.979
I H 0.979
R H 0.980
R H 0.969
R H 0.962
D H 0.947
T H 0.916
Y H 0.822
D H 0.734
A H 0.594
D C 0.634
P C 0.670
K C 0.590
A C 0.494
F H 0.488
L H 0.530
E H 0.587
E H 0.660
W H 0.663
R H 0.636
P H 0.670
K H 0.689
D H 0.820
M H 0.881
D H 0.926
I H 0.956
R H 0.979
N H 0.990
Q H 0.992
I H 0.993
L H 0.993
E H 0.992
A H 0.983
R H 0.963
E H 0.918
R H 0.843
L H 0.625
P H 0.512
K C 0.797
V C 0.845
E C 0.819
A C 0.848
P C 0.924
N H 0.950
T H 0.974
A H 0.988
L H 0.987
Y H 0.992
D H 0.993
C H 0.992
A H 0.991
A H 0.989
L H 0.974
C H 0.958
I H 0.930
A H 0.865
L H 0.637
G C 0.857
S C 0.959
D C 0.956
G C 0.958
L H 0.898
R H 0.951
G H 0.976
E H 0.966
L H 0.981
T H 0.983
L H 0.987
L H 0.988
R H 0.989
S H 0.991
A H 0.991
R H 0.993
A H 0.992
L H 0.990
A H 0.984
A H 0.975
L H 0.953
E H 0.798
G C 0.939
A C 0.941
T C 0.863
A C 0.659
V C 0.506
G C 0.728
R H 0.941
D H 0.953
H H 0.960
L H 0.985
K H 0.989
R H 0.990
V H 0.984
A H 0.975
T H 0.967
M H 0.935
A H 0.899
L H 0.856
S H 0.795
H H 0.751
R H 0.718
L H 0.657
R H 0.536
R C 0.614
D C 0.857
P H 0.522
L H 0.627
D H 0.653
E H 0.513
A C 0.504
G C 0.592
S C 0.545
T H 0.558
A H 0.711
R H 0.829
V H 0.915
A H 0.971
R H 0.990
T H 0.988
V H 0.985
E H 0.979
E H 0.956
T H 0.882
L H 0.593
P C 0.980
END

