
PFRMAT AL
TARGET T0127
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1fts
V  48    I 296
L  49    L 297
V  50    M 298
F  51    V 299
G  52    G 300
D  53    V 301
R  54    N 302
G  55    G 303
T  56    V 304
G  57    G 305
K  58    K 306
S  59    T 307
T  60    T 308
A  61    T 309
V  62    I 310
R  63    G 311
A  64    K 312
L  65    L 313
A  66    A 314
A  67    R 315
L  68    Q 316
L  69    F 317
I  72    V 324
E  73    M 325
A  74    L 326
V  75    A 327
E  76    A 328
G  77    G 329
C  78    D 330
P  79    T 331
V  80    F 332
N  84    A 336
V  85    V 337
E  86    E 338
M  87    Q 339
I  88    L 340
P  89    Q 341
D  90    V 342
W  91    W 343
A  92    G 344
T  97    I 349
N  98    P 350
V  99    V 351
I 100    I 352
R 101    A 353
K 102    Q 354
P 103    H 355
T 104    T 356
P 105    G 357
E 115    Q 369
D 116    A 370
R 117    A 371
V 118    K 372
V 119    A 373
G 120    R 374
A 121    N 375
L 122    I 376
D 123    D 377
I 124    V 378
E 125    L 379
R 126    I 380
A 127    A 381
I 128    D 382
S 129    T 383
K 130    A 384
G 131    G 385
E 132    R 386
K 133    L 387
D 158    P 412
H 159    H 413
I 160    E 414
V 161    V 415
D 162    M 416
L 163    L 417
L 164    T 418
L 165    I 419
D 166    D 420
A 168    A 421
Q 169    S 422
S 170    T 423
G 171    G 424
E 172    Q 425
N 173    N 426
V 174    A 427
V 175    V 428
E 176    S 429
L 205    V 460
L 206    A 461
D 207    D 462
R 208    Q 463
F 209    F 464
G 210    G 465
L 211    I 466
S 212    P 467
TER
END


