
PFRMAT AL
TARGET T0127
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 1a5t
R  18    R   8
P  19    P   9
V  20    D  10
F  21    F  11
P  22    E  12
F  23    K  13
S  24    L  14
A  25    V  15
I  26    A  16
V  27    S  17
G  28    Y  18
Q  29    Q  19
E  30    A  20
D  31    G  21
M  32    R  22
K  33    G  23
L  34    H  24
A  35    H  25
L  36    A  26
L  37    L  27
L  38    L  28
T  39    I  29
A  40    Q  30
V  41    A  31
D  42    L  32
P  43    P  33
G  44    G  34
I  45    M  35
G  46    G  36
L  65    D  37
A  66    D  38
A  67    A  39
L  68    L  40
L  69    I  41
P  70    Y  42
E  71    A  43
I  72    L  44
E  73    S  45
A  74    R  46
V  75    Y  47
E  76    L  48
G  77    L  49
C  78    C  50
P  79    Q  51
V  80    Q  52
P  83    P  53
E  86    Q  54
M  87    G  55
I  88    H  56
P  89    K  57
D  90    S  58
W  91    C  59
A  92    G  60
T  93    H  61
V  94    C  62
L  95    R  63
S  96    G  64
T  97    C  65
N  98    Q  66
V  99    L  67
I 100    M  68
R 101    Q  69
K 102    A  70
P 103    G  71
T 104    T  72
P 105    H  73
V 106    P  74
V 107    D  75
D 108    Y  76
L 109    Y  77
P 110    T  78
L 111    L  79
G 112    A  80
V 113    P  81
S 114    E  82
E 115    K  83
D 116    G  84
R 117    K  85
V 118    N  86
V 119    T  87
G 120    L  88
A 121    G  89
L 122    V  90
D 123    D  91
I 124    A  92
E 125    V  93
R 126    R  94
A 127    E  95
I 128    V  96
S 129    T  97
E 132    E  98
K 133    K  99
A 134    L 100
F 135    N 101
E 136    E 102
P 137    H 103
G 138    A 104
L 139    R 105
L 140    L 106
A 141    G 107
R 142    G 108
A 143    A 109
N 144    K 110
Y 147    V 111
L 148    V 112
Y 149    W 113
I 150    V 114
D 151    T 115
E 152    D 116
C 153    A 117
N 154    A 118
L 155    L 119
L 156    L 120
E 157    T 121
D 158    D 122
H 159    A 123
I 160    A 124
V 161    A 125
D 162    N 126
L 163    A 127
L 164    L 128
L 165    L 129
D 166    K 130
V 167    T 131
A 168    L 132
Q 169    E 133
S 170    E 134
G 171    P 135
E 172    P 136
H 184    A 137
P 185    E 138
A 186    T 139
R 187    W 140
F 188    F 141
V 189    F 142
L 190    L 143
V 191    A 144
G 192    T 145
S 193    R 146
N 195    E 147
P 196    P 148
E 197    E 149
E 198    R 150
L 201    L 151
R 202    L 152
P 203    A 153
Q 204    T 154
L 205    L 155
L 206    R 156
D 207    S 157
R 208    R 158
F 209    C 159
G 210    R 160
L 211    L 161
S 212    H 162
V 213    Y 163
E 214    L 164
V 215    A 165
L 216    P 166
S 217    P 167
P 218    P 168
R 219    E 169
TER
END


