
PFRMAT AL
TARGET T0125
AUTHOR 8971-8833-9593
METHOD FFAS (http://bioinformatics.burnham-inst.org/FFAS/)
METHOD Fold & Function Assignment System A profile-profile alignment method.
METHOD 1) PSI-Blast is used to collect homologs
METHOD 2) The sequences of homologs are translated into a profile
METHOD    [The translation is not based on PSI-Blast approach]
METHOD 3) Translated profile is aligned against a profile database
MODEL  2
PARENT 2LYN_D
REMARK DATE	2000-01-20
REMARK SCORE	?
V 4 K 9
V 5 F 10
V 6 L 11
S 7 N 12
R 8 K 13
Q 9 A 14
E 10 F 15
Q 11 E 16
S 12 V 17
Y 13 A 18
V 14 L 19
Q 15 K 20
R 16 V 21
G 17 Q 22
M 18 I 23
V 19 I 24
N 20 A 25
F 21 G 26
L 22 F 27
D 23 D 28
E 24 R 29
E 25 G 30
M 26 L 31
H 27 V 32
K 28 K 33
L 29 W 34
V 30 L 35
K 31 R 36
R 32 V 37
F 33 H 38
R 34 G 39
D 35 R 40
M 36 T 41
R 37 L 42
W 38 S 43
N 39 T 44
L 40 V 45
G 41 Q 46
P 42 K 47
G 43 K 48
F 44 A 49
V 45 L 50
F 46 Y 51
L 47 F 52
L 48 V 53
K 49 N 54
K 50 R 55
V 51 R 56
N 52 Y 57
R 53 M 58
E 54 Q 59
R 55 T 60
M 56 H 61
M 57 W 62
R 58 A 63
Y 59 N 64
C 60 Y 65
M 61 M 66
D 62 L 67
Y 63 W 68
A 64 I 69
R 65 N 70
Y 66 K 71
S 67 K 72
K 68 I 73
K 69 D 74
I 70 A 75
L 71 L 76
Q 72 G 77
L 73 R 78
K 74 T 79
H 75 P 80
L 76 V 81
P 77 V 82
V 78 G 83
N 79 D 84
K 80 Y 85
K 81 T 86
T 82 R 87
L 83 L 88
T 84 G 89
K 85 A 90
M 86 E 91
G 87 I 92
R 88 G 93
F 89 R 94
V 90 R 95
G 91 I 96
Y 92 D 97
R 93 M 98
N 94 A 99
Y 95 Y 100
G 96 F 101
V 97 Y 102
I 98 D 103
R 99 F 104
E 100 L 105
L 101 K 106
Y 102 D 107
A 103 K 108
D 104 N 109
V 105 M 110
F 106 I 111
R 107 P 112
D 108 K 113
V 109 Y 114
Q 110 L 115
G 111 P 116
F 112 Y 117
R 113 M 118
G 114 E 119
P 115 E 120
K 116 I 121
M 117 N 122
T 118 R 123
A 119 M 124
A 120 R 125
M 121 P 126
R 122 A 127
K 123 D 128
Y 124 V 129
S 125 P 130
S 126 V 131
K 127 K 132
D 128 Y 133
P 129 M 134
TER
END

