
PFRMAT AL
TARGET T0125
AUTHOR 2650-8406-4261
REMARK Target Was Recognized by BLAST
REMARK DDP Alignments tend to be better, so we will go with that
REMARK The DDP was used as a prior with nominal (1/3) sequence information included
REMARK Higher Gap Penalties of 1.6 and .2 were used
METHOD This pairwise alignment was produced using the DDP Method
METHOD Fold Choice was validated by BLAST
MODEL 1
PARENT 2lis_A
V 14 V 6
Q 15 E 7
R 16 P 8
G 17 K 9
M 18 F 10
V 19 L 11
N 20 N 12
F 21 F 15
D 23 E 16
E 24 V 17
E 25 A 18
M 26 L 19
H 27 K 20
K 28 Q 22
L 29 I 23
V 30 I 24
K 31 A 25
R 32 G 26
F 33 F 27
R 34 R 29
D 35 G 30
M 36 L 31
R 37 K 33
W 38 W 34
L 40 L 35
G 41 G 39
P 42 K 48
G 43 A 49
F 44 L 50
V 45 Y 51
F 46 F 52
L 47 V 53
N 52 N 54
R 53 R 55
R 55 R 56
M 56 Y 57
M 57 M 58
R 58 Q 59
Y 59 H 61
C 60 W 62
M 61 A 63
D 62 N 64
Y 63 Y 65
A 64 M 66
R 65 L 67
Y 66 W 68
S 67 I 69
K 68 N 70
K 69 K 71
I 70 K 72
L 71 I 73
Q 72 D 74
L 73 L 76
K 74 G 77
H 75 R 78
L 76 T 79
P 77 P 80
V 78 V 81
N 79 V 82
K 81 G 83
T 82 D 84
L 83 Y 85
T 84 T 86
K 85 R 87
M 86 L 88
G 87 G 89
R 88 A 90
F 89 E 91
V 90 I 92
G 91 G 93
R 93 R 94
N 94 R 95
Y 95 I 96
G 96 D 97
I 98 M 98
R 99 A 99
E 100 Y 100
L 101 F 101
Y 102 Y 102
D 104 D 103
V 105 F 104
F 106 L 105
R 107 K 106
D 108 D 107
Q 110 K 108
G 111 N 109
F 112 M 110
R 113 I 111
P 115 P 112
K 116 K 113
M 117 Y 114
T 118 L 115
A 119 P 116
A 120 Y 117
M 121 M 118
R 122 E 119
K 123 E 120
Y 124 I 121
S 125 N 122
S 126 R 123
K 127 M 124
D 128 R 125
P 129 P 126
G 130 A 127
T 131 D 128
F 132 V 129
P 133 P 130
C 134 V 131
K 135 K 132
TER
END


