
PFRMAT AL
TARGET T0125
AUTHOR 3092-8926-3558
METHOD PDB BLAST http://bioinformatics.ljcrf.edu/pdb_blast/
METHOD 1) Use PSI-Blast to collect homologs and create a sequence profile
METHOD    for the family.
METHOD 2) Use created profile to search for related proteins in PDB
MODEL  4
PARENT 1lis_
Q 11 E 16
S 12 V 17
Y 13 A 18
V 14 L 19
Q 15 K 20
R 16 V 21
G 17 Q 22
M 18 I 23
V 19 I 24
N 20 A 25
F 21 G 26
L 22 F 27
D 23 D 28
E 24 R 29
E 25 G 30
M 26 L 31
H 27 V 32
K 28 K 33
L 29 W 34
V 30 L 35
K 31 R 36
R 32 V 37
F 33 H 38
R 37 G 39
W 38 R 40
N 39 T 41
L 40 L 42
G 41 S 43
P 42 T 44
G 43 V 45
F 44 Q 46
V 45 K 47
F 46 K 48
L 47 A 49
L 48 L 50
K 49 Y 51
K 50 F 52
V 51 V 53
N 52 N 54
R 53 R 55
E 54 R 56
R 55 Y 57
M 56 M 58
M 57 Q 59
R 58 T 60
Y 59 H 61
C 60 W 62
M 61 A 63
D 62 N 64
Y 63 Y 65
A 64 M 66
R 65 L 67
Y 66 W 68
S 67 N 70
K 68 K 71
K 69 K 72
I 70 I 73
L 71 D 74
Q 72 A 75
L 73 L 76
K 74 G 77
H 75 R 78
L 76 T 79
P 77 P 80
V 78 V 81
N 79 V 82
K 80 G 83
K 81 D 84
T 82 Y 85
T 84 T 86
K 85 R 87
M 86 L 88
G 87 G 89
R 88 A 90
F 89 E 91
V 90 I 92
G 91 G 93
Y 92 R 94
R 93 R 95
N 94 I 96
Y 95 D 97
G 96 M 98
V 97 A 99
I 98 Y 100
R 99 F 101
A 103 Y 102
D 104 D 103
V 105 F 104
F 106 L 105
R 107 K 106
D 108 D 107
V 109 K 108
Q 110 N 109
G 111 M 110
F 112 I 111
P 115 P 112
K 116 K 113
M 117 Y 114
T 118 L 115
A 119 P 116
A 120 Y 117
M 121 M 118
R 122 E 119
K 123 E 120
Y 124 I 121
S 125 N 122
S 126 R 123
K 127 M 124
D 128 R 125
P 129 P 126
G 130 A 127
T 131 D 128
F 132 V 129
P 133 P 130
C 134 V 131
K 135 K 132
TER
END

