
PFRMAT AL
TARGET T0125
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 5
PARENT 1bcf_A
R    8 M 1
Q    9 K 2
E   10 G 3
Q   11 D 4
S   12 T 5
Y   13 K 6
V   14 V 7
Q   15 I 8
R   16 N 9
G   17 Y 10
M   18 L 11
V   19 N 12
N   20 K 13
F   21 L 14
L   22 L 15
D   23 G 16
E   24 N 17
E   25 E 18
M   26 L 19
H   27 V 20
K   28 A 21
L   29 I 22
V   30 N 23
K   31 Q 24
R   32 Y 25
F   33 F 26
R   34 L 27
D   35 H 28
M   36 A 29
R   37 R 30
W   38 W 35
N   39 G 36
L   40 L 37
G   43 K 38
F   44 R 39
V   45 L 40
F   46 N 41
L   47 D 42
L   48 V 43
K   49 E 44
K   50 Y 45
V   51 H 46
N   52 E 47
R   53 S 48
E   54 I 49
R   55 D 50
M   56 E 51
M   57 M 52
R   58 K 53
Y   59 H 54
C   60 A 55
M   61 D 56
D   62 R 57
Y   63 Y 58
A   64 I 59
R   65 E 60
K   69 R 61
I   70 I 62
L   71 L 63
Q   72 F 64
L   73 L 65
K   74 E 66
H   75 G 67
L   76 L 68
P   77 P 69
V   78 L 77
N   79 N 78
K   80 L 95
K   81 D 96
T   82 G 97
L   83 A 98
T   84 K 99
K   85 N 100
M   86 L 101
G   87 R 102
R   88 E 103
F   89 A 104
V   90 I 105
G   91 G 106
Y   92 Y 107
R   93 A 108
N   94 D 109
Y   95 S 110
G   96 V 111
V   97 V 115
I   98 S 116
R   99 R 117
E  100 D 118
L  101 M 119
Y  102 M 120
A  103 I 121
D  104 E 122
V  105 I 123
F  106 L 124
R  107 R 125
D  108 D 126
V  109 E 127
Q  110 E 128
G  111 G 129
F  112 H 130
R  113 I 131
G  114 D 132
P  115 W 133
K  116 D 139
M  117 L 140
T  118 I 141
A  119 Q 142
A  120 K 143
M  121 M 144
R  122 Q 147
K  123 N 148
Y  124 Y 149
S  125 Q 153
S  126 I 154
K  127 R 155
D  128 E 156
P  129 E 157
G  130 G 158
TER
END

