
PFRMAT AL
TARGET T0125
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 2gsq
R    8 L 76
Q    9 D 77
E   10 G 78
Q   11 K 79
S   12 T 80
Y   13 S 81
V   14 L 82
Q   15 E 83
R   16 K 84
G   17 Y 85
M   18 R 86
V   19 V 87
N   20 D 88
F   21 E 89
L   22 I 90
D   23 T 91
E   24 E 92
E   25 T 93
M   26 L 94
H   27 Q 95
K   28 D 96
L   29 I 97
V   30 F 98
K   31 N 99
R   32 D 100
F   33 V 101
R   34 V 102
D   35 K 103
M   36 I 104
R   37 K 105
W   38 F 106
N   39 A 107
L   40 P 108
G   41 E 109
P   42 A 110
G   43 A 111
F   44 K 112
F   46 E 113
L   47 A 114
L   48 V 115
K   49 Q 116
K   50 Q 117
V   51 N 118
N   52 Y 119
R   53 E 120
E   54 K 121
R   55 S 122
M   56 C 123
M   57 K 124
R   58 R 125
Y   59 L 126
C   60 A 127
M   61 P 128
D   62 F 129
Y   63 L 130
A   64 E 131
R   65 G 132
Y   66 L 133
S   67 L 134
K   68 V 135
K   69 S 136
I   70 N 137
L   71 G 138
Q   72 G 139
L   73 G 140
K   74 D 141
H   75 G 142
L   76 F 143
P   77 F 144
V   78 V 145
N   79 G 146
K   80 N 147
K   81 S 148
M   86 M 149
G   87 T 150
F   89 L 151
V   90 A 152
G   91 D 153
Y   92 L 154
R   93 H 155
N   94 C 156
Y   95 Y 157
G   96 V 158
V   97 A 159
I   98 L 160
R   99 E 161
E  100 V 162
L  101 P 163
Y  102 L 164
A  103 K 165
D  104 H 166
V  105 T 167
F  106 P 168
R  107 E 169
D  108 L 170
V  109 L 171
Q  110 K 172
G  111 D 173
F  112 C 174
P  115 P 175
K  116 K 176
M  117 I 177
T  118 V 178
A  119 A 179
A  120 K 189
M  121 I 190
R  122 A 191
K  123 A 192
Y  124 Y 193
S  125 L 194
S  126 K 195
K  127 K 196
D  128 R 197
P  129 P 198
G  130 V 199
T  131 R 200
F  132 F 202
TER
END

