
PFRMAT AL
TARGET T0125
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1gux_B
S    7 T 645
R    8 S 646
Q    9 L 647
E   10 S 648
Q   11 L 649
S   12 F 650
Y   13 Y 651
V   14 K 652
Q   15 K 653
R   16 V 654
G   17 Y 655
M   18 R 656
V   19 L 657
N   20 A 658
F   21 Y 659
L   22 L 660
E   25 R 661
M   26 L 662
H   27 N 663
K   28 T 664
L   29 L 665
V   30 C 666
K   31 E 667
R   32 R 668
F   33 L 669
R   34 L 670
D   35 S 671
M   36 E 672
R   37 H 673
W   38 P 674
N   39 E 675
L   40 L 676
G   41 E 677
P   42 H 678
G   43 I 679
F   44 I 680
V   45 W 681
F   46 T 682
L   47 L 683
L   48 F 684
K   49 Q 685
K   50 H 686
V   51 Q 689
N   52 N 690
R   53 E 691
E   54 Y 692
R   55 E 693
M   56 L 694
M   57 M 695
R   58 R 696
Y   59 M 705
C   60 C 706
M   61 S 707
D   62 M 708
Y   63 Y 709
A   64 G 710
R   65 I 711
Y   66 C 712
S   67 K 713
K   68 V 714
K   69 K 715
I   70 N 716
L   71 I 717
Q   72 D 718
L   73 L 719
K   74 K 720
H   75 D 730
L   76 L 731
P   77 P 732
V   78 A 734
N   79 V 735
K   80 Q 736
K   81 E 737
T   82 T 738
L   83 F 739
T   84 K 740
K   85 R 741
M   86 V 742
G   87 D 750
R   88 S 751
F   89 I 752
V   90 I 753
G   91 V 754
Y   92 F 755
R   93 Y 756
N   94 N 757
Y   95 S 758
G   96 V 759
V   97 F 760
I   98 M 761
R   99 Q 762
E  100 R 763
L  101 L 764
Y  102 K 765
A  103 T 766
D  104 N 767
V  105 I 768
F  106 L 769
K  123 Q 770
Y  124 Y 771
S  125 A 772
S  126 S 773
K  127 T 774
D  128 R 775
P  129 P 776
G  130 P 777
T  131 T 778
F  132 L 779
C  134 S 780
K  135 P 781
N  136 I 782
E  137 P 783
K  138 H 784
R  139 I 785
TER
END

