
PFRMAT AL
TARGET T0125
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 3lyn_A
Q    9 I 11
E   10 N 12
Q   11 K 13
S   12 A 14
Y   13 Y 15
V   14 M 19
Q   15 K 20
R   16 I 21
G   17 Q 22
M   18 I 23
V   19 I 24
N   20 S 25
F   21 G 26
L   22 F 27
D   23 D 28
E   24 R 29
E   25 Q 30
M   26 L 31
H   27 T 32
K   28 A 33
L   29 W 34
V   30 L 35
R   32 R 36
F   33 V 37
R   34 H 38
D   35 G 39
M   36 R 40
R   37 R 41
L   40 L 42
G   41 T 43
P   42 N 44
G   43 N 45
F   44 Q 46
V   45 K 47
F   46 K 48
L   47 T 49
L   48 L 50
K   49 F 51
K   50 F 52
V   51 V 53
N   52 N 54
R   53 R 55
E   54 R 56
R   55 Y 57
M   56 M 58
M   57 Q 59
R   58 T 60
Y   59 H 61
C   60 W 62
M   61 Q 63
D   62 N 64
Y   63 Y 65
A   64 M 66
R   65 L 67
Y   66 W 68
S   67 V 69
K   68 K 70
K   69 R 71
I   70 K 72
L   71 I 73
Q   72 K 74
L   73 A 75
K   74 L 76
H   75 G 77
L   76 R 78
P   77 P 79
V   78 A 80
N   79 A 81
K   80 V 82
K   81 G 83
T   82 D 84
L   83 Y 85
T   84 T 86
K   85 R 87
M   86 L 88
G   87 G 89
R   88 A 90
F   89 E 91
V   90 I 92
G   91 G 93
R   93 R 94
N   94 R 95
Y   95 V 96
G   96 D 97
V   97 M 98
I   98 V 99
R   99 F 100
Y  102 F 101
A  103 Y 102
D  104 N 103
V  105 F 104
F  106 L 105
R  107 S 106
D  108 G 107
V  109 R 108
Q  110 K 109
G  111 M 110
F  112 I 111
P  115 P 112
K  116 P 113
M  117 Y 114
T  118 S 115
A  119 A 116
A  120 Y 117
M  121 M 118
R  122 A 119
K  123 K 120
Y  124 L 121
S  125 N 122
S  126 A 123
K  127 L 124
D  128 R 125
P  129 P 126
G  130 A 127
T  131 D 128
F  132 V 129
P  133 P 130
C  134 V 131
K  135 K 132
TER
END

