
PFRMAT SS
TARGET T0123
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
V C 0.97
E C 0.51
V C 0.81
T C 0.87
P C 0.90
I C 0.77
M C 0.89
T C 0.75
E C 0.79
L C 0.74
D C 0.76
T C 0.50
Q C 0.37
K C 0.17
V C 0.01
A C 0.17
G C 0.03
T E 0.50
W E 0.33
H E 0.89
T E 0.75
V E 0.95
A E 0.92
M E 0.85
A E 0.25
V C 0.39
S C 0.70
D C 0.68
V H 0.11
S H 0.18
L H 0.38
L H 0.54
D H 0.57
A H 0.38
K C 0.22
S C 0.78
S C 0.95
P C 0.82
L E 0.09
K E 0.54
A E 0.85
Y E 0.95
V E 0.93
E E 0.94
G E 0.96
L E 0.96
K E 0.90
P E 0.78
T C 0.85
P C 0.94
E C 0.94
G C 0.84
D C 0.28
L E 0.78
E E 0.94
I E 0.95
L E 0.95
L E 0.94
Q E 0.91
K E 0.91
R E 0.73
E E 0.63
N C 0.68
D C 0.88
K E 0.49
C E 0.88
A E 0.94
Q E 0.97
E E 0.95
V E 0.94
L E 0.95
L E 0.96
A E 0.94
K E 0.91
K E 0.92
T C 0.83
D C 0.94
I C 0.92
P C 0.91
A C 0.77
V E 0.87
F E 0.94
K E 0.93
I E 0.96
N E 0.95
A E 0.81
L C 0.85
D C 0.88
E E 0.02
N E 0.59
Q E 0.94
L E 0.95
F E 0.95
L E 0.95
L E 0.96
D E 0.94
T E 0.64
D C 0.89
Y C 0.65
D C 0.49
S C 0.71
H E 0.89
L E 0.96
L E 0.92
L E 0.96
C E 0.96
M E 0.90
E E 0.66
N E 0.19
S C 0.17
A C 0.86
S C 0.90
P C 0.94
E C 0.76
H E 0.29
S E 0.75
L E 0.94
V E 0.94
C E 0.95
Q E 0.95
S E 0.95
L E 0.90
A E 0.80
R C 0.58
T C 0.90
L C 0.88
E C 0.92
V C 0.89
D C 0.94
D H 0.86
Q H 0.89
I H 0.93
R H 0.94
E H 0.96
K H 0.95
F H 0.96
E H 0.96
D H 0.96
A H 0.96
L H 0.92
K H 0.85
T H 0.53
L C 0.78
S C 0.96
V C 0.89
P C 0.45
M C 0.15
R E 0.01
I E 0.17
L C 0.29
P C 0.44
A C 0.48
Q C 0.68
L C 0.53
E C 0.68
E C 0.62
Q C 0.22
C C 0.58
R C 0.83
V C 0.96
END

