
PFRMAT SS
TARGET T0123
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0123.t2k.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 108.694
METHOD
MODEL 1
V C 0.749
E C 0.779
V C 0.763
T C 0.722
P C 0.660
I C 0.650
M C 0.707
T C 0.755
E C 0.815
L C 0.851
D C 0.918
T H 0.673
Q H 0.715
K H 0.807
V H 0.644
A H 0.462
G C 0.710
T C 0.510
W E 0.422
H E 0.641
T E 0.696
V E 0.659
A E 0.623
M E 0.648
A E 0.677
V C 0.560
S C 0.853
D C 0.681
V C 0.537
S C 0.479
L H 0.471
L H 0.450
D H 0.476
A H 0.586
K H 0.534
S C 0.495
S C 0.772
P C 0.683
L C 0.638
K C 0.570
A E 0.564
Y E 0.812
V E 0.902
E E 0.926
G E 0.950
L E 0.940
K E 0.918
P E 0.747
T C 0.618
P C 0.915
E C 0.961
G C 0.880
D C 0.716
L E 0.820
E E 0.960
I E 0.989
L E 0.993
L E 0.989
Q E 0.977
K E 0.932
R E 0.764
E E 0.486
N C 0.842
D C 0.866
K E 0.543
C E 0.772
A E 0.921
Q E 0.958
E E 0.949
V E 0.965
L E 0.954
L E 0.947
A E 0.904
K E 0.762
K E 0.602
T C 0.654
D C 0.785
I C 0.932
P C 0.857
A C 0.589
V E 0.847
F E 0.955
K E 0.959
I E 0.922
N E 0.761
A E 0.593
L C 0.659
D C 0.830
E C 0.818
N C 0.666
Q E 0.809
L E 0.948
F E 0.987
L E 0.986
L E 0.942
D E 0.796
T C 0.558
D C 0.818
Y C 0.713
D C 0.714
S C 0.618
H E 0.749
L E 0.941
L E 0.976
L E 0.978
C E 0.970
M E 0.920
E E 0.768
N E 0.593
S E 0.546
A C 0.723
S C 0.935
P C 0.955
E C 0.764
H E 0.712
S E 0.914
L E 0.972
V E 0.989
C E 0.995
Q E 0.995
S E 0.988
L E 0.936
A E 0.767
R C 0.654
T C 0.933
L C 0.750
E C 0.815
V C 0.787
D C 0.903
D H 0.961
Q H 0.968
I H 0.983
R H 0.983
E H 0.992
K H 0.993
F H 0.995
E H 0.996
D H 0.995
A H 0.992
L H 0.988
K H 0.977
T H 0.962
L H 0.765
S C 0.983
V C 0.963
P C 0.928
M H 0.638
R H 0.715
I H 0.587
L C 0.565
P C 0.636
A C 0.666
Q C 0.803
L C 0.836
E C 0.848
E C 0.715
Q C 0.563
C E 0.660
R E 0.647
V C 0.565
END

