
PFRMAT AL
TARGET T0123
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1beb_A
P    5 Q 5
I    6 T 6
M    7 M 7
T    8 K 8
E    9 G 9
L   10 L 10
D   11 D 11
T   12 I 12
Q   13 Q 13
K   14 K 14
V   15 V 15
A   16 A 16
G   17 G 17
T   18 T 18
W   19 W 19
H   20 Y 20
T   21 S 21
V   22 L 22
A   23 A 23
M   24 M 24
A   25 A 25
V   26 A 26
S   27 S 27
D   28 D 28
V   29 I 29
S   30 S 30
L   31 L 31
L   32 L 32
D   33 D 33
A   34 A 34
K   35 Q 35
S   36 S 36
S   37 A 37
P   38 P 38
L   39 L 39
K   40 R 40
A   41 V 41
Y   42 Y 42
V   43 V 43
E   44 E 44
G   45 E 45
L   46 L 46
K   47 K 47
P   48 P 48
T   49 T 49
P   50 P 50
E   51 E 51
G   52 G 52
D   53 D 53
L   54 L 54
E   55 E 55
I   56 I 56
L   57 L 57
L   58 L 58
Q   59 Q 59
K   60 K 60
R   61 W 61
E   62 E 62
N   63 N 63
D   64 G 64
K   65 E 65
C   66 C 66
A   67 A 67
Q   68 Q 68
E   69 K 69
V   70 K 70
L   71 I 71
L   72 I 72
A   73 A 73
K   74 E 74
K   75 K 75
T   76 T 76
D   77 K 77
I   78 I 78
P   79 P 79
A   80 A 80
V   81 V 81
F   82 F 82
K   83 K 83
I   84 I 84
N   85 D 85
A   86 A 86
L   87 L 87
D   88 N 88
E   89 E 89
N   90 N 90
Q   91 K 91
L   92 V 92
F   93 L 93
L   94 V 94
L   95 L 95
D   96 D 96
T   97 T 97
D   98 D 98
Y   99 Y 99
D  100 K 100
S  101 K 101
H  102 Y 102
L  103 L 103
L  104 L 104
L  105 F 105
C  106 C 106
M  107 M 107
E  108 E 108
N  109 N 109
S  110 S 110
A  111 A 111
S  112 E 112
P  113 P 113
E  114 E 114
H  115 Q 115
S  116 S 116
L  117 L 117
V  118 V 118
C  119 C 119
Q  120 Q 120
S  121 C 121
L  122 L 122
A  123 V 123
R  124 R 124
T  125 T 125
L  126 P 126
E  127 E 127
V  128 V 128
D  129 D 129
D  130 D 130
Q  131 E 131
I  132 A 132
R  133 L 133
E  134 E 134
K  135 K 135
F  136 F 136
E  137 D 137
D  138 K 138
A  139 A 139
L  140 L 140
K  141 K 141
T  142 A 142
L  143 L 143
S  144 P 144
V  145 M 145
P  146 H 146
M  147 I 147
R  148 R 148
I  149 L 149
L  150 F 151
P  151 N 152
A  152 P 153
Q  153 T 154
L  154 Q 155
E  155 E 157
E  156 E 158
Q  157 Q 159
C  158 C 160
TER
END

