
PFRMAT AL
TARGET T0120
AUTHOR 3359-3308-3659
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=2.70 
REMARK CONFIDENCE: UNCERTAIN (less than 50% confidence [ ZSCORE<3.5 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1c3qa
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
MODEL  5
PARENT 1c3q_A
M   1     V    13
E   2     R    14
R   3     R    15
K   4     H    16
I   5     S    17
S   6     P    18
R   7     L    19
I   8     V    20
H   9     H    21
L  10     S    22
V  11     I    23
S  12     T    24
E  13     N    25
P  14     N    26
S  15     V    27
I  16     V    28
T  17     T    29
H  18     N    30
F  19     F    31
L  20     T    32
Q  21     A    33
V  22     N    34
S  23     G    35
W  24     L    36
E  25     L    37
K  26     A    38
T  27     L    39
L  28     G    40
E  29     A    41
S  30     S    42
G  31     P    43
F  32     V    44
V  33     M    45
I  34     A    46
T  35     Y    47
L  36     A    48
T  37     K    49
D  38     E    50
G  39     E    51
H  40     V    52
S  41     A    53
A  42     D    54
W  43     M    55
T  44     A    56
G  45     K    57
T  46     I    58
V  47     L    64
S  48     N    65
E  49     I    66
S  50     G    67
E  51     T    68
I  52     L    69
S  53     S    70
Q  54     K    71
E  55     E    72
A  56     S    73
D  57     V    74
D  58     E    75
M  59     A    76
A  60     M    77
M  61     I    78
E  62     I    79
K  63     A    80
G  64     G    81
K  65     K    82
Y  66     S    83
V  67     A    84
G  68     N    85
E  69     E    86
L  70     H    87
R  71     G    88
K  72     V    89
A  73     P    90
L  74     V    91
L  75     I    92
S  76     L    93
G  77     G    97
A  78     A    98
G  79     G    99
P  80     A   100
N 112     T   101
L 113     P   102
E 114     F   103
K 115     R   104
V 116     T   105
E 117     E   106
N 118     S   107
P 119     A   108
A 120     R   109
E 121     D   110
V 122     I   111
I 123     I   112
R 124     R   113
E 125     E   114
L 126     V   115
C 130     R   116
L 131     L   117
D 132     A   118
T 133     A   119
I 134     I   120
A 135     R   121
E 136     G   122
N 137     N   123
Q 138     A   124
A 139     A   125
K 140     E   126
N 141     I   127
E 142     A   128
H 143     H   129
L 144     T   130
Q 145     V   131
K 146     G   132
E 147     V   133
N 148     T   134
E 149     D   135
R 150     W   136
L 151     L   137
L 152     I   138
R 153     K   139
D 154     G   140
W 155     V   141
N 156     D   142
D 157     A   143
V 158     G   144
Q 159     E   145
G 160     G   146
R 161     G   147
F 162     G   148
E 163     D   149
K 164     I   150
C 165     I   151
V 166     R   152
S 167     L   153
A 168     A   154
K 169     Q   155
E 170     Q   156
A 171     A   157
L 172     A   158
E 173     Q   159
T 174     K   160
D 175     L   161
K 178     N   162
R 179     T   163
F 180     V   164
I 181     I   165
L 182     A   166
V 183     I   167
L 184     T   168
N 185     G   169
E 186     E   170
K 187     V   171
K 188     D   172
T 189     V   173
K 190     I   174
I 191     A   175
R 192     D   176
S 193     T   177
L 194     S   178
H 195     H   179
N 196     V   180
K 197     Y   181
L 198     T   182
L 199     L   183
N 200     H   184
A 201     N   185
A 202     G   186
Q 203     H   187
E 204     K   188
R 205     L   189
E 206     L   190
K 207     T   191
D 208     K   192
I 209     V   193
K 210     T   194
Q 211     G   195
E 212     A   196
G 213     G   197
E 214     L   200
T 215     T   201
A 216     S   202
I 217     V   203
C 218     V   204
S 219     G   205
E 220     A   206
M 221     F   207
T 222     C   208
A 223     A   209
D 224     V   210
E 235     E   211
E 236     E   212
S 237     N   213
E 238     P   214
N 239     L   215
Q 240     F   216
T 241     A   217
D 242     A   218
L 243     I   219
S 244     A   220
G 245     A   221
L 246     I   222
A 247     S   223
S 248     S   224
A 249     Y   225
A 250     G   226
V 251     V   227
S 252     A   228
K 253     A   229
D 254     Q   230
D 255     L   231
S 256     A   232
I 257     A   233
I 258     Q   234
S 259     Q   235
S 260     T   236
L 261     A   237
D 262     D   238
K 271     K   239
R 272     G   240
R 273     P   241
Q 274     G   242
R 275     S   243
M 276     F   244
Q 277     Q   245
R 278     I   246
N 279     E   247
L 280     L   248
G 281     L   249
T 282     N   250
E 283     K   251
P 284     L   252
K 285     S   253
M 286     T   254
A 287     V   255
P 288     T   256
E 290     E   257
N 291     Q   258
Q 292     D   259
L 293     V   260
Q 294     Q   261
E 295     E   262
K 296     W   263
M 319     A   264
S 320     T   265
L 321     I   266
E 322     E   267
T 323     R   268
L 324     V   269
R 325     T   270
N 326     V   271
S 327     S   272
TER
END

