
PFRMAT AL
TARGET T0119
AUTHOR 6305-9733-7289
REMARK similar to 1cqx.
METHOD PSI-BLAST (Altschul et al., Nucl. Acids Res. 25, 3389-3402, 1997)
METHOD (-h 0.0005 -j 20) and iterative SCANPS
METHOD (Barton et al., 2000, http://barton.ebi.ac.uk/scanps/)
METHOD were run against a combined search set comprising the SWALL, PDB and ENSEMBL
METHOD sequence databases. In these runs, 1cqx (chain B) was identified as a
METHOD homologue. All sequences hit with an E-val of less than 0.0005
METHOD were collected and aligned all_against_all using AMPS
METHOD (Barton, G. J., Methods in Enzymology 183, 403-428, 1990)
METHOD and one sequence was removed from any pair sharing greater than 75%
METHOD identity. These sequences were combined with t0119 and 1cqx_B, and
METHOD a multiple alignment was constructed by CLUSTALW (Higgins et al.,
METHOD Methods in Enz.266,383-402,1996.) The alignment between t0119
METHOD and 1cqx_B was extracted, edited and corrected by hand in the
METHOD Jalview alignment editor
METHOD (M. Clamp, URL: http://www2.ebi.ac.uk/~michele/jalview/contents.html).
MODEL  1
PARENT 1cqx_B
L 8 Q B50
Q 9 G B51
F 10 Q B52
E 11 Q B53
D 12 Q B54
G 13 Q B55
V 14 A B56
T 15 L B57
R 16 A B58
F 17 R B59
I 18 A B60
C 19 V B61
I 20 Y B62
A 21 A B63
Q 22 Y B64
G 23 A B65
E 24 E B66
T 25 N B67
L 26 I B68
S 27 E B69
D 28 D B70
A 29 P B71
A 30 N B72
Y 31 S B73
R 32 L B74
Q 33 M B75
Q 34 A B76
I 35 V B77
N 36 L B78
I 37 K B79
P 38 N B80
M 39 I B81
D 40 A B82
C 41 N B83
R 42 K B84
E 43 H B85
G 44 A B86
E 45 S B87
C 46 L B88
G 47 G B89
T 48 V B90
C 49 K B91
R 50 P B92
A 51 E B93
F 52 Q B94
C 53 Y B95
E 54 P B96
S 55 I B97
G 56 V B98
N 57 G B99
Y 58 E B100
D 59 H B101
M 60 L B102
P 61 L B103
E 62 A B104
D 63 A B105
N 64 I B106
Y 65 K B107
I 66 E B108
E 67 V B109
D 68 L B110
E 74 D B117
A 75 I B118
Q 76 I B119
Q 77 S B120
G 78 A B121
Y 79 W B122
V 80 A B123
L 81 Q B124
A 82 A B125
C 83 Y B126
Q 84 G B127
C 85 N B128
R 86 L B129
P 87 A B130
T 88 D B131
S 89 V B132
D 90 L B133
A 91 M B134
V 92 G B135
F 93 M B136
Q 94 E B137
I 95 S B138
Q 96 E B139
A 97 L B140
S 98 Y B141
S 99 E B142
F 109 R B155
E 110 T B156
G 111 F B157
T 112 V B158
L 113 I B159
A 114 R B160
R 115 E B161
V 116 K B162
E 117 R B163
N 118 P B164
L 119 E B165
S 120 S B166
D 121 D B167
S 122 V B168
T 123 I B169
I 124 T B170
T 125 S B171
F 126 F B172
D 127 I B173
I 128 L B174
Q 129 E B175
L 130 P B176
D 131 A B177
D 132 D B178
G 133 G B179
Q 134 G B180
P 135 P B181
D 136 V B182
I 137 V B183
H 138 N B184
F 139 F B185
L 140 E B186
A 141 P B187
G 142 G B188
Q 143 Q B189
Y 144 Y B190
V 145 T B191
N 146 S B192
V 147 V B193
T 148 A B194
T 155 I B205
R 156 R B206
S 157 Q B207
Y 158 Y B208
S 159 S B209
F 160 L B210
S 161 S B211
S 162 D B212
Q 163 M B213
P 164 P B214
G 165 N B215
N 166 G B216
R 167 R B217
L 168 T B218
T 169 Y B219
G 170 R B220
F 171 I B221
V 172 S B222
V 173 V B223
K 180 Y B235
M 181 V B236
S 182 S B237
E 183 N B238
Y 184 L B239
L 185 L B240
S 186 H B241
V 187 D B242
Q 188 H B243
A 189 V B244
K 190 N B245
A 191 V B246
G 192 G B247
D 193 D B248
K 194 Q B249
M 195 V B250
S 196 K B251
F 197 L B252
T 198 A B253
G 199 A B254
P 200 P B255
F 201 Y B256
G 202 G B257
S 203 S B258
F 204 F B259
Y 205 H B260
L 206 I B261
P 212 P B268
V 213 I B269
L 214 V B270
M 215 L B271
L 216 I B272
A 217 S B273
G 218 G B274
G 219 G B275
T 220 V B276
G 221 G B277
I 222 L B278
A 223 T B279
P 224 P B280
F 225 M B281
L 226 V B282
S 227 S B283
M 228 M B284
L 229 L B285
Q 230 K B286
V 231 V B287
L 232 A B288
E 233 L B289
Q 234 Q B290
K 235 A B291
V 241 V B296
R 242 V B297
L 243 F B298
V 244 V B299
F 245 H B300
G 246 G B301
V 247 A B302
T 248 R B303
Q 249 N B304
D 250 S B305
C 251 A B306
D 252 V B307
L 253 H B308
V 254 A B309
A 255 M B310
L 256 R B311
E 257 D B312
Q 258 R B313
L 259 L B314
D 260 R B315
A 261 E B316
L 262 A B317
Q 263 A B318
Q 264 K B319
K 265 T B320
L 266 Y B321
P 267 E B322
W 268 N B323
F 269 L B324
E 270 D B325
Y 271 L B326
R 272 F B327
T 273 V B328
V 274 F B329
V 275 Y B330
A 276 D B331
K 285 R B341
G 286 D B342
Y 287 Y B343
V 288 D B344
T 289 Y B345
G 290 P B346
H 291 G B347
I 292 L B348
V 302 A B363
D 303 D B364
V 304 Y B365
Y 305 Y B366
L 306 I B367
C 307 C B368
G 308 G B369
P 309 P B370
V 310 I B371
P 311 P B372
M 312 F B373
V 313 M B374
E 314 R B375
A 315 M B376
V 316 Q B377
R 317 H B378
S 318 D B379
W 319 A B380
L 320 L B381
D 321 K B382
T 322 N B383
Q 323 L B384
G 324 G B385
I 325 I B386
Q 326 H B387
P 327 E B388
A 328 A B389
N 329 R B390
F 330 I B391
L 331 H B392
F 332 Y B393
E 333 E B394
K 334 V B395
F 335 F B396
S 336 G B397
A 337 P B398
N 338 D B399
TER
END


