
PFRMAT AL
TARGET T0118
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 1bur_S
M    1 M 1
A    2 Q 2
G    3 V 3
Y    4 W 4
G    5 P 5
A    6 I 6
K    7 L 7
G    8 G 8
I    9 M 9
R   10 K 10
K   11 K 11
V   12 Y 12
G   13 E 13
A   14 T 14
F   15 L 15
R   16 S 16
S   17 P 20
G   18 L 21
L   19 T 22
E   20 T 23
D   21 E 24
K   22 Q 25
V   23 L 26
S   24 L 27
K   25 A 28
Q   26 E 29
L   27 V 30
E   28 N 31
S   29 V 35
K   30 N 36
G   31 N 37
I   32 L 42
K   33 E 43
F   34 F 44
E   35 E 45
Y   36 V 46
E   37 K 47
E   38 D 48
W   39 G 49
K   40 F 50
V   41 V 51
A   47 Y 52
S   48 R 53
N   49 E 54
H   50 H 55
T   51 L 56
Y   52 K 57
T   53 S 58
P   54 P 59
D   55 G 60
F   56 Y 61
L   57 Y 62
L   58 D 63
P   59 G 64
N   60 R 65
G   61 Y 66
I   62 W 67
F   63 T 68
V   64 M 69
E   65 W 70
T   66 K 71
K   67 L 72
G   68 P 73
L   69 M 74
W   70 F 75
E   71 G 76
S   72 C 77
D   73 T 78
D   74 D 79
R   75 K 91
K   76 K 92
K   77 A 93
H   78 Y 94
P   86 P 95
E   87 D 96
L   88 A 97
D   89 F 98
I   90 I 99
R   91 R 100
I   92 I 101
V   93 I 102
F   94 F 104
S   95 D 105
S   96 N 106
S   97 K 107
R   98 R 108
T   99 Q 109
K  100 S 114
L  101 F 115
Y  102 I 116
K  103 A 117
G  104 Y 118
S  105 K 119
P  106 P 120
T  107 A 121
S  108 G 122
Y  109 Y 123
TER
END

