
PFRMAT AL
TARGET T0117
AUTHOR 6305-9733-7289
REMARK similar to 5tmp (chain:A).
METHOD PSI-BLAST (Altschul et al., Nucl. Acids Res. 25, 3389-3402, 1997)
METHOD (-h 0.0005 -j 20) and iterative SCANPS (Barton et al., 2000, http://barton.ebi.ac.uk/scanps/)
METHOD were run against a combined search set comprising the SWALL, PDB and ENSEMBL
METHOD sequence databases. In these runs, 5tmp (chain:A) was identified as a possible homologue
METHOD by both methods.
METHOD The profile alignment from the 5th round in the iterative SCANPS run was taken
METHOD as the basis for the final sequence-structure alignment. The pairwise alignment of t0117 and
METHOD 5tmp (chain:A) was extracted and edited by hand in the Jalview alignment editor
METHOD (M. Clamp, URL: http://www2.ebi.ac.uk/~michele/jalview/contents.html).
MODEL  1
PARENT 5tmp_A
Q 19 R 2
P 20 S 3
F 21 K 4
T 22 Y 5
V 23 I 6
L 24 V 7
I 25 I 8
E 26 E 9
G 27 G 10
N 28 L 11
I 29 E 12
G 30 G 13
S 31 A 14
G 32 G 15
K 33 K 16
T 34 T 17
T 35 T 18
Y 36 A 19
L 37 R 20
N 38 N 21
H 39 V 22
F 40 V 23
E 41 V 24
K 42 E 25
Y 43 T 26
K 44 L 27
N 45 E 28
D 46 Q 29
I 47 L 30
E 52 E 40
P 53 P 41
V 54 G 42
E 55 G 43
K 56 T 44
W 57 Q 45
R 58 L 46
N 59 A 47
V 60 E 48
N 61 K 49
G 62 L 50
V 63 R 51
N 64 S 52
L 65 L 53
L 66 L 54
E 67 L 55
L 68 D 56
M 69 I 57
Y 70 K 58
K 71 S 59
D 72 V 60
P 73 G 61
K 74 D 62
K 75 E 63
W 76 V 64
A 77 I 65
M 78 T 66
P 79 D 67
F 80 K 68
Q 81 A 69
S 82 E 70
Y 83 V 71
V 84 L 72
T 85 M 73
L 86 F 74
T 87 Y 75
M 88 A 76
L 89 A 77
Q 90 R 78
S 91 V 79
H 92 Q 80
T 93 L 81
A 94 V 82
P 95 E 83
T 96 T 84
N 97 V 85
K 98 I 86
K 99 K 87
L 100 P 88
K 101 A 89
I 102 L 90
M 103 A 91
E 104 N 92
R 105 G 93
S 106 T 94
I 107 W 95
F 108 V 96
S 109 I 97
A 110 G 98
R 111 D 99
Y 112 R 100
C 113 H 101
F 114 D 102
V 115 L 103
E 116 S 104
N 117 T 105
M 118 Q 106
R 119 A 107
R 120 Y 108
N 121 Q 109
G 122 G 110
S 123 G 111
L 124 G 112
E 125 R 113
Q 126 G 114
G 127 I 115
M 128 D 116
Y 129 Q 117
N 130 H 118
T 131 M 119
L 132 L 120
E 133 A 121
E 134 T 122
W 135 L 123
Y 136 R 124
K 137 D 125
F 138 A 126
I 139 V 127
E 140 L 128
E 141 G 129
D 148 D 134
L 149 L 135
I 150 T 136
I 151 L 137
Y 152 Y 138
L 153 L 139
R 154 D 140
T 155 V 141
S 156 T 142
P 157 P 143
E 158 E 144
V 159 V 145
A 160 G 146
Y 161 L 147
E 162 K 148
R 163 R 149
I 164 A 150
R 165 R 151
Q 166 A 152
R 167 R 153
A 168 G 154
R 169 E 155
S 170 L 156
E 171 D 157
E 172 R 158
L 183 S 163
H 184 F 164
E 185 D 165
L 186 F 166
H 187 F 167
E 188 N 168
D 189 R 169
W 190 T 170
L 191 R 171
I 192 A 172
H 193 R 173
Q 194 Y 174
R 195 L 175
R 196 E 176
P 197 L 177
Q 198 A 178
S 199 A 179
C 200 Q 180
K 201 D 181
V 202 K 182
L 203 S 183
V 204 I 184
L 205 H 185
D 206 T 186
A 207 I 187
D 208 D 188
L 209 A 189
N 210 T 190
L 211 Q 191
E 212 P 192
N 213 L 193
I 214 E 194
G 215 A 195
T 216 V 196
E 217 M 197
Y 218 D 198
Q 219 A 199
R 220 I 200
S 221 R 201
E 222 T 202
S 223 T 203
S 224 V 204
I 225 T 205
F 226 H 206
D 227 W 207
A 228 V 208
I 229 K 209
S 230 E 210
S 231 L 211
TER
END


