
PFRMAT AL
TARGET T0117
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 4tmk_A
Q   19 R 2
P   20 S 3
F   21 K 4
T   22 Y 5
V   23 I 6
L   24 V 7
I   25 I 8
E   26 E 9
G   27 G 10
N   28 L 11
I   29 E 12
G   30 G 13
S   31 A 14
G   32 G 15
K   33 K 16
T   34 T 17
T   35 T 18
Y   36 V 23
L   37 V 24
N   38 E 25
H   39 T 26
F   40 L 27
E   41 E 28
K   42 Q 29
Y   43 L 30
K   44 G 31
N   45 R 33
D   46 D 34
I   47 M 35
C   48 V 36
L   49 F 37
L   50 T 38
T   51 R 39
E   52 E 40
P   53 P 41
V   54 G 42
R   58 G 43
N   59 T 44
V   60 Q 45
N   61 L 46
G   62 A 47
V   63 E 48
N   64 K 49
L   65 L 50
L   66 R 51
E   67 S 52
L   68 L 53
M   69 L 54
Y   70 L 55
K   71 T 66
D   72 D 67
P   73 K 68
K   74 A 69
K   75 E 70
W   76 V 71
A   77 L 72
M   78 M 73
P   79 F 74
F   80 Y 75
Q   81 A 76
S   82 A 77
Y   83 R 78
V   84 V 79
T   85 Q 80
L   86 L 81
T   87 V 82
M   88 E 83
L   89 T 84
Q   90 V 85
S   91 I 86
H   92 K 87
T   93 P 88
A   94 A 89
P   95 L 90
T   96 A 91
N   97 N 92
K   98 G 93
K   99 T 94
L  100 W 95
K  101 V 96
I  102 I 97
M  103 G 98
E  104 D 99
R  105 R 100
S  106 H 101
A  110 D 102
R  111 L 103
Y  112 S 104
C  113 T 105
F  114 Q 106
V  115 A 107
E  116 Y 108
N  117 Q 109
M  118 G 110
R  119 G 111
R  120 G 112
N  121 R 113
G  122 G 114
L  124 I 115
E  125 D 116
Q  126 Q 117
G  127 H 118
M  128 M 119
Y  129 L 120
N  130 A 121
T  131 T 122
W  135 L 123
Y  136 R 124
K  137 D 125
F  138 A 126
I  139 V 127
E  140 L 128
E  141 G 129
S  142 D 130
I  143 F 131
Q  146 R 132
A  147 P 133
D  148 D 134
L  149 L 135
I  150 T 136
I  151 L 137
Y  152 Y 138
L  153 L 139
R  154 D 140
T  155 V 141
S  156 T 142
P  157 P 143
E  158 E 144
V  159 V 145
A  160 G 146
Y  161 L 147
E  162 K 148
R  163 R 149
I  164 A 150
R  165 R 151
Q  166 A 152
R  167 R 153
A  168 G 154
R  169 E 155
S  170 L 156
E  171 D 157
E  172 E 160
S  173 Q 161
V  175 E 162
P  176 S 163
L  177 F 164
K  178 D 165
Y  179 F 166
L  180 F 167
Q  181 N 168
E  182 R 169
L  183 T 170
H  184 R 171
E  185 A 172
L  186 R 173
H  187 Y 174
E  188 L 175
D  189 E 176
H  193 L 177
Q  194 A 178
R  195 A 179
R  196 Q 180
P  197 D 181
Q  198 K 182
S  199 S 183
C  200 I 184
L  203 H 185
V  204 T 186
L  205 I 187
D  206 D 188
A  207 A 189
D  208 T 190
L  209 Q 191
N  210 P 192
L  211 L 193
E  212 E 194
N  213 A 195
I  214 V 196
G  215 M 197
T  216 D 198
E  217 A 199
Y  218 I 200
E  222 R 201
S  223 T 202
S  224 T 203
I  225 V 204
F  226 T 205
D  227 H 206
A  228 W 207
I  229 V 208
S  230 K 209
S  231 E 210
N  232 L 211
TER
END

