
PFRMAT AL
TARGET T0117
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1ak2
T   18 P 14
Q   19 K 15
P   20 G 16
F   21 V 17
T   22 R 18
V   23 A 19
L   24 V 20
I   25 L 21
E   26 L 22
G   27 G 23
N   28 P 24
I   29 P 25
G   30 G 26
S   31 A 27
G   32 G 28
K   33 K 29
T   34 G 30
T   35 T 31
Y   36 Q 32
L   37 A 33
N   38 P 34
H   39 K 35
F   40 L 36
E   41 A 37
K   42 K 38
Y   43 N 39
K   44 F 40
N   45 C 41
D   46 V 42
I   47 C 43
C   48 H 44
L   49 L 45
L   50 A 46
T   51 T 47
E   52 G 48
P   53 D 49
V   54 M 50
E   55 L 51
K   56 R 52
W   57 A 53
R   58 M 54
N   59 V 55
V   60 A 56
N   61 S 57
G   62 G 58
V   63 S 59
N   64 E 60
L   65 L 61
L   66 G 62
E   67 K 63
L   68 K 64
M   69 L 65
Y   70 K 66
K   71 A 67
D   72 T 68
P   73 M 69
K   74 D 70
K   75 A 71
W   76 K 73
A   77 L 74
M   78 V 75
P   79 S 76
F   80 D 77
Q   81 E 78
S   82 M 79
Y   83 V 80
V   84 L 81
T   85 E 82
L   86 L 83
M   88 I 84
L   89 E 85
Q   90 K 86
S   91 N 87
H   92 L 88
T   93 E 89
A   94 T 90
P   95 P 91
T   96 P 92
N   97 C 93
K   98 K 94
K   99 N 95
L  100 G 96
K  101 F 97
I  102 L 98
M  103 L 99
E  104 D 100
R  105 G 101
S  106 F 102
I  107 P 103
F  108 R 104
S  109 T 105
Y  129 V 106
N  130 R 107
T  131 Q 108
L  132 A 109
E  133 E 110
E  134 M 111
W  135 L 112
Y  136 D 113
K  137 D 114
F  138 L 115
I  139 M 116
E  140 E 117
E  141 K 118
S  142 R 119
H  144 K 120
V  145 E 121
Q  146 K 122
A  147 L 123
D  148 D 124
L  149 S 125
I  150 V 126
I  151 I 127
Y  152 E 128
L  153 F 129
R  154 S 130
T  155 I 131
S  156 P 132
P  157 D 133
E  158 S 134
V  159 L 135
A  160 L 136
Y  161 I 137
E  162 R 138
R  163 R 139
I  164 I 140
R  165 T 141
Q  166 G 142
R  167 R 143
A  168 L 144
R  169 I 145
S  170 H 146
E  171 S 177
E  172 D 178
S  173 D 179
V  175 N 180
P  176 K 181
L  177 K 182
K  178 A 183
Y  179 L 184
L  180 K 185
Q  181 I 186
E  182 R 187
L  183 L 188
H  184 E 189
E  185 A 190
L  186 Y 191
H  187 H 192
E  188 T 193
D  189 Q 194
W  190 T 195
L  191 L 198
I  192 V 199
H  193 E 200
Q  194 Y 201
R  195 Y 202
R  196 S 203
P  197 K 204
Q  198 R 205
S  199 G 206
C  200 I 207
V  202 H 208
L  203 S 209
V  204 A 210
L  205 I 211
D  206 D 212
A  207 A 213
D  208 S 214
L  209 Q 215
N  210 T 216
L  211 P 217
E  212 D 218
N  213 V 219
I  214 V 220
Y  218 F 221
Q  219 A 222
R  220 S 223
S  221 I 224
E  222 L 225
S  223 A 226
S  224 A 227
I  225 F 228
F  226 S 229
D  227 K 230
A  228 A 231
I  229 T 232
S  230 S 233
TER
END

