
PFRMAT AL
TARGET T0116
AUTHOR 7573-5202-7463
METHOD 
METHOD The target profile was searched against database of profiles built
METHOD from 35% NR subset of PDB. Each profile was generated by running 5
METHOD iterations of PSI-BLAST and dumping the scoring matrix.  The significance
METHOD of each alignment was evaluated by randomly shuffling the template
METHOD profile.  Top-scoring hits (Z-score > 4.0) were checked for compatability
METHOD with the PHD and PSIPRED secondary structure preditions and with the 
METHOD published secondary structure as cited on the CASP target page.  
METHOD
MODEL 4
PARENT 2reb
D 141    D   3 
G 142    E   4 
W 143    N   5 
G 144    K   6 
L 145    Q   7 
A 146    K   8 
F 147    A   9 
L 148    L  10 
D 149    A  11 
V 150    A  12 
S 151    A  13 
T 152    L  14 
G 153    G  15 
E 154    Q  16 
F 155    I  17 
K 156    E  18 
G 157    K  19 
T 158    Q  20 
V 159    F  21 
L 160    G  22 
K 161    K  23 
S 162    G  24 
S 164    S  25 
A 165    I  26 
L 166    M  27 
Y 167    R  28 
D 168    L  29 
E 169    G  30 
L 170    E  31 
F 171    D  32 
R 172    R  33 
H 173    S  34 
R 174    M  35 
P 175    D  36 
A 176    V  37 
E 177    E  38 
V 178    T  39 
L 179    I  40 
L 180    S  41 
A 181    T  42 
P 182    G  43 
E 183    S  44 
L 184    L  45 
L 185    S  46 
E 186    L  47 
N 187    D  48 
G 188    I  49 
A 189    A  50 
F 190    L  51 
L 191    G  52 
D 192    A  53 
E 193    G  54 
F 194    G  55 
F 198    L  56 
P 199    P  57 
V 200    M  58 
M 201    G  59 
L 202    R  60 
S 203    I  61 
E 204    V  62 
A 205    E  63 
P 206    I  64 
F 207    Y  65 
E 208    G  66 
P 209    P  67 
E 210    E  68 
G 211    S  69 
E 212    S  70 
G 213    G  71 
L 217    K  72 
R 218    T  73 
R 219    T  74 
A 220    L  75 
R 221    T  76 
G 222    L  77 
A 223    Q  78 
L 224    V  79 
L 225    I  80 
A 226    A  81 
Y 227    A  82 
A 228    A  83 
Q 229    Q  84 
R 230    R  85 
T 231    E  86 
Q 232    G  87 
G 233    K  88 
G 234    T  89 
A 235    C  90 
L 236    A  91 
S 237    F  92 
L 238    I  93 
Q 239    D  94 
P 240    A  95 
F 241    E  96 
R 242    H  97 
F 243    A  98 
Y 244    L  99 
D 245    D 100 
P 246    P 101 
A 248    I 102 
F 249    Y 103 
M 250    A 104 
R 251    R 105 
L 252    K 106 
P 253    L 107 
E 254    G 108 
A 255    V 109 
T 256    D 110 
L 257    I 111 
R 258    D 112 
A 259    N 113 
L 260    L 114 
E 261    L 115 
V 262    C 116 
F 263    S 117 
E 264    Q 118 
P 265    P 119 
L 266    D 120 
R 267    T 121 
G 268    G 122 
Q 269    E 123 
D 270    Q 124 
T 271    A 125 
L 272    L 126 
F 273    E 127 
S 274    I 128 
V 275    C 129 
L 276    D 130 
D 277    A 131 
E 278    L 132 
T 279    A 133 
R 280    R 134 
T 281    S 135 
A 282    G 136 
G 284    A 137 
R 285    V 138 
R 286    D 139 
L 287    V 140 
L 288    I 141 
Q 289    V 142 
S 290    V 143 
W 291    D 144 
L 292    S 145 
R 293    V 146 
H 294    A 147 
P 295    A 148 
L 296    L 149 
L 297    T 150 
D 298    P 151 
R 299    K 152 
G 300    A 153 
P 301    E 154 
L 302    I 155 
E 303    E 156 
F 312    G 165 
V 313    L 166 
R 314    A 167 
E 315    A 168 
G 316    R 169 
A 317    M 170 
L 318    M 171 
R 319    S 172 
E 320    Q 173 
G 321    A 174 
V 322    M 175 
R 323    R 176 
R 324    K 177 
L 325    L 178 
L 326    A 179 
Y 327    G 180 
R 328    N 181 
L 329    L 182 
A 330    K 183 
D 331    Q 184 
L 332    S 185 
E 333    N 186 
R 334    T 187 
L 335    L 188 
A 336    L 189 
T 337    I 190 
R 338    F 191 
L 339    I 192 
E 340    N 193 
L 341    Q 194 
Q 357    T 210 
I 358    G 211 
L 359    G 212 
P 360    N 213 
E 361    A 214 
L 362    L 215 
R 363    K 216 
A 364    F 217 
L 365    Y 218 
L 366    A 219 
G 367    S 220 
E 368    V 221 
E 369    R 222 
V 370    L 223 
G 371    D 224 
L 372    I 225 
P 373    R 226 
D 374    R 227 
L 375    I 228 
S 376    G 229 
P 377    A 230 
L 378    V 231 
K 379    K 232 
E 380    E 233 
E 381    G 234 
L 382    E 235 
E 383    N 236 
A 384    V 237 
A 385    V 238 
L 386    G 239 
V 387    S 240 
E 388    E 241 
D 389    T 242 
P 390    R 243 
L 392    V 244 
K 393    K 245 
V 394    V 246 
S 395    V 247 
E 396    K 248 
G 397    N 249 
G 398    K 250 
L 399    I 251 
I 400    A 252 
R 401    A 253 
E 402    P 254 
G 403    F 255 
Y 404    K 256 
D 405    Q 257 
P 406    A 258 
D 407    E 259 
L 408    F 260 
D 409    Q 261 
A 410    I 262 
L 411    L 263 
R 412    Y 264 
A 413    G 265 
A 414    E 266 
H 415    G 267 
R 416    I 268 
E 417    N 269 
G 418    F 270 
V 419    Y 271 
A 420    G 272 
Y 421    E 273 
F 422    L 274 
L 423    V 275 
E 424    D 276 
L 425    L 277 
E 426    G 278 
E 427    V 279 
R 428    K 280 
E 429    E 281 
R 430    K 282 
E 431    L 283 
R 432    I 284 
T 433    E 285 
G 434    K 286 
I 435    A 287 
P 436    G 288 
T 437    A 289 
L 438    W 290 
K 439    Y 291 
V 440    S 292 
G 441    Y 293 
Y 442    K 294 
N 443    G 295 
A 444    E 296 
V 445    K 297 
F 446    I 298 
G 447    G 299 
Y 448    Q 300 
Y 449    G 301 
L 450    K 302 
E 451    A 303 
V 452    N 304 
T 453    A 305 
R 454    T 306 
P 455    A 307 
Y 456    W 308 
Y 457    L 309 
E 458    K 310 
R 459    D 311 
V 460    N 312 
P 461    P 313 
K 462    E 314 
E 463    T 315 
Y 464    A 316 
R 465    K 317 
P 466    E 318 
V 467    I 319 
Q 468    E 320 
T 469    K 321 
L 470    K 322 
K 471    V 323 
D 472    R 324 
R 473    E 325 
Q 474    L 326 
R 475    L 327 
Y 476    L 328 
TER    
END      


