
PFRMAT AL
TARGET T0116
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  4
PARENT 2tma_A
G 247    K   5
A 248    K   6
F 249    K   7
M 250    M   8
R 251    Q   9
L 252    M  10
P 253    L  11
E 254    K  12
A 255    L  13
T 256    D  14
L 257    K  15
R 258    E  16
A 259    N  17
L 260    A  18
E 261    L  19
V 262    D  20
F 263    R  21
E 264    A  22
P 265    E  23
L 266    Q  24
R 267    A  25
G 268    E  26
Q 269    A  27
D 270    D  28
T 271    K  29
L 272    K  30
F 273    A  31
S 274    A  32
V 275    E  33
L 276    D  34
D 277    R  35
E 278    S  36
T 279    K  37
R 280    Q  38
T 281    L  39
A 282    E  40
P 283    D  41
G 284    E  42
R 285    L  43
R 286    V  44
L 287    S  45
L 288    L  46
Q 289    Q  47
S 290    K  48
W 291    K  49
L 292    L  50
R 293    K  51
H 294    G  52
P 295    T  53
L 296    E  54
L 297    D  55
D 298    E  56
R 299    L  57
G 300    D  58
P 301    K  59
L 302    Y  60
E 303    S  61
A 304    E  62
R 305    A  63
L 306    L  64
D 307    K  65
R 308    D  66
V 309    A  67
E 310    Q  68
G 311    E  69
F 312    K  70
V 313    L  71
R 314    E  72
E 315    L  73
G 316    A  74
A 317    E  75
L 318    K  76
R 319    K  77
E 320    A  78
G 321    D  84
V 322    V  85
R 323    A  86
R 324    S  87
L 325    L  88
L 326    N  89
Y 327    R  90
R 328    R  91
L 329    I  92
A 330    E  97
D 331    E  98
L 332    L  99
E 333    D 100
R 334    R 101
L 335    A 102
A 336    Q 103
T 337    E 104
R 338    R 105
L 339    L 106
E 340    A 107
L 341    T 108
G 342    A 109
R 343    L 110
A 344    Q 111
S 345    K 112
P 346    L 113
K 347    E 114
D 348    E 115
L 349    A 116
G 350    E 117
A 351    K 118
L 352    A 119
R 353    A 120
R 354    D 121
S 355    E 122
L 356    S 123
Q 357    E 124
I 358    R 125
L 359    M 127
P 360    K 128
E 361    V 129
L 362    I 130
R 363    E 131
A 364    S 132
L 365    R 133
L 366    A 134
G 367    Q 135
E 368    K 136
E 369    D 137
V 370    E 138
G 371    E 139
L 372    K 140
P 373    M 141
D 374    E 142
L 375    I 143
S 376    Q 144
P 377    E 145
L 378    I 146
K 379    Q 147
E 380    L 148
E 381    K 149
L 382    E 150
E 383    A 151
A 384    K 152
A 385    H 153
L 386    I 154
V 387    A 155
E 388    E 156
D 389    D 157
P 390    A 158
P 391    D 159
L 392    R 160
K 393    K 161
V 394    Y 162
S 395    E 163
E 396    E 164
G 397    V 165
G 398    A 166
L 399    R 167
I 400    K 168
R 401    L 169
E 402    V 170
G 403    I 171
Y 404    I 172
D 405    E 173
P 406    S 174
D 407    D 175
L 408    L 176
D 409    E 177
A 410    R 178
L 411    A 179
R 412    E 180
A 413    E 181
A 414    R 182
H 415    A 183
R 416    E 184
E 417    L 185
G 418    S 186
V 419    E 187
A 420    G 188
Y 421    K 189
F 422    C 190
L 423    A 191
E 424    E 192
L 425    L 193
E 426    E 194
E 427    E 195
R 428    E 196
E 429    I 197
R 430    K 198
E 431    N 203
R 432    L 204
T 433    K 205
G 434    S 206
I 435    L 207
P 436    E 208
T 437    A 209
L 438    Q 210
K 439    A 211
V 440    E 212
G 441    K 213
Y 442    Y 214
N 443    S 215
A 444    Q 216
V 445    K 217
F 446    E 218
G 447    D 219
Y 448    K 220
Y 449    Y 221
L 450    E 222
E 451    E 223
V 452    E 224
T 453    I 225
R 454    K 226
P 455    V 227
Y 456    L 228
Y 457    S 229
E 458    D 230
R 459    K 231
V 460    L 232
P 461    K 233
K 462    E 234
E 463    A 235
Y 464    E 236
R 465    T 237
P 466    R 238
V 467    A 239
Q 468    E 240
T 469    F 241
L 470    A 242
K 471    E 243
D 472    R 244
R 473    S 245
Q 474    V 246
R 475    T 247
Y 476    K 248
T 477    L 249
L 478    E 250
P 479    K 251
E 480    S 252
M 481    I 253
K 482    D 254
E 483    D 255
K 484    L 256
E 485    E 257
R 486    D 258
E 487    E 259
V 488    L 260
Y 489    Y 261
R 490    A 262
L 491    Q 263
E 492    K 264
A 493    L 265
L 494    K 266
I 495    Y 267
R 496    K 268
R 497    A 269
R 498    I 270
E 499    S 271
E 500    E 272
E 501    E 273
V 502    L 274
F 503    D 275
L 504    H 276
E 505    A 277
V 506    L 278
TER
END

