
PFRMAT AL
TARGET T0116
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1ffh
T 469    R  15
L 470    L  16
K 471    R  17
D 472    G  18
R 473    R  19
Q 474    G  20
R 475    R  21
Y 476    I  22
T 477    T  23
L 478    E  24
P 479    E  25
E 480    D  26
M 481    L  27
K 482    K  28
E 483    A  29
K 484    T  30
E 485    L  31
R 486    R  32
E 487    E  33
V 488    I  34
Y 489    R  35
R 490    R  36
L 491    M  39
E 492    D  40
A 493    A  41
L 494    D  42
V 502    D  50
F 503    F  51
L 504    V  52
E 505    E  53
V 506    V  55
R 507    R  56
E 508    E  57
R 509    E  58
A 510    A  59
K 511    K  62
R 512    Q  63
Q 513    V  64
A 514    L  65
E 515    E  66
A 516    S  67
L 517    L  68
R 518    T  69
E 519    P  70
A 520    A  71
A 521    E  72
R 522    V  73
I 523    I  74
L 524    L  75
A 525    A  76
E 526    T  77
V 529    V  78
Y 530    Y  79
A 531    E  80
A 532    A  81
L 533    L  82
A 534    K  83
E 535    E  84
V 536    A  85
A 537    L  86
Y 540    G  87
G 541    G  88
Y 542    E  89
V 543    A  90
R 544    R  91
P 545    P  93
R 546    V  94
F 547    L  95
G 548    K  96
D 549    D  97
R 550    R  98
TER
END

