
PFRMAT AL
TARGET T0116
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 1b0u_A
F 567    E  20
V 568    V  21
P 569    L  22
N 570    K  23
D 571    G  24
L 572    V  25
E 573    S  26
M 574    L  27
A 575    A  31
H 576    G  32
E 577    D  33
L 578    V  34
V 579    I  35
L 580    S  36
I 581    I  37
T 582    I  38
G 583    G  39
P 584    S  40
N 585    S  41
M 586    G  42
A 587    S  43
G 588    G  44
K 589    K  45
S 590    S  46
T 591    T  47
F 592    F  48
L 593    L  49
R 594    R  50
Q 595    C  51
T 596    I  52
A 597    N  53
L 598    F  54
I 599    L  55
A 600    L  72
L 601    V  73
L 602    R  74
A 603    D  75
Q 604    K  76
V 605    D  77
G 606    G  78
S 607    Q  79
F 608    L  80
V 609    K  81
P 610    V  82
A 611    A  83
E 612    D  84
E 613    K  85
A 614    N  86
H 615    Q  87
L 616    L  88
P 617    R  89
L 618    L  90
F 619    L  91
D 620    F 102
G 621    N 103
I 622    L 104
Y 623    W 105
T 624    S 106
R 625    H 107
I 626    M 108
G 627    T 109
A 628    V 110
S 629    L 111
D 630    E 112
D 631    N 113
L 632    V 114
A 633    M 115
V 641    H 127
E 642    D 128
M 643    A 129
E 644    R 130
E 645    E 131
V 646    R 132
A 647    A 133
L 648    L 134
I 649    K 135
L 650    Y 136
K 651    L 137
E 652    A 138
A 653    K 139
D 662    G 148
E 663    K 149
V 664    Y 150
G 665    P 151
R 666    V 152
G 667    H 153
T 668    L 154
S 669    S 155
D 672    G 156
G 673    G 157
V 674    Q 158
A 675    Q 159
I 676    Q 160
A 677    R 161
T 678    V 162
A 679    S 163
V 680    I 164
A 681    A 165
E 682    R 166
A 683    A 167
L 684    L 168
H 685    A 169
E 686    M 170
R 687    E 171
R 688    P 172
A 689    D 173
Y 690    V 174
T 691    L 175
L 692    L 176
F 693    F 177
A 694    D 178
T 695    E 179
H 696    P 180
Y 697    T 181
F 698    S 182
E 699    A 183
L 700    L 184
T 701    D 185
A 702    P 186
L 703    E 187
G 704    L 188
L 705    V 189
P 706    G 190
R 707    E 191
L 708    V 192
K 709    L 193
N 710    R 194
L 711    I 195
H 712    M 196
V 713    Q 197
A 714    Q 198
A 715    L 199
R 716    A 200
E 717    E 201
E 718    E 202
A 719    G 203
G 720    K 204
G 721    T 205
L 722    M 206
V 723    V 207
F 724    V 208
L 729    A 216
P 730    R 217
G 731    H 218
P 732    V 219
A 733    S 220
S 734    S 221
K 735    H 222
S 736    V 223
Y 737    I 224
G 738    F 225
V 739    L 226
E 740    H 227
V 741    Q 228
A 742    G 229
A 743    K 230
M 744    I 231
A 745    E 232
G 746    G 235
L 747    D 236
P 748    P 237
K 749    E 238
E 750    Q 239
V 751    V 240
V 752    F 241
TER
END

