
PFRMAT SS
TARGET T0115
AUTHOR 9521-1365-5893
METHOD Program Name: PSIPRED
METHOD Synopsis: Neural network prediction based on PSIBLAST output
METHOD Five neural networks are used to predict secondary structure directly
METHOD from the profiles generated by PSIBLAST. Networks 1-4 predict
METHOD secondary structure, the 5th network filters the output of the first
METHOD level networks. The first level networks have 17*21 inputs and 75 hidden
METHOD units, the second level network has 17*3 inputs and 55 hidden units.
METHOD The networks have been trained on a set of 2937 proteins with
METHOD early-stopped training. 10% of the training data was used to detect
METHOD convergence.
METHOD The target sequence was scanned against a non-redundant databank of
METHOD filtered protein sequences (> 500,000 sequences), with 3 PSIBLAST
METHOD iterations.
MODEL  1
M C 0.97
R C 0.42
E E 0.14
I E 0.60
M E 0.67
K E 0.92
V E 0.95
R E 0.96
V E 0.96
K E 0.94
A E 0.86
P E 0.12
C E 0.21
T E 0.62
S E 0.67
A C 0.23
N C 0.56
L C 0.50
G C 0.61
V C 0.78
G C 0.59
F C 0.18
D C 0.26
V E 0.70
F E 0.57
G E 0.72
L E 0.93
C E 0.81
L E 0.88
K E 0.32
E C 0.61
P C 0.79
Y C 0.70
D C 0.78
V E 0.88
I E 0.94
E E 0.94
V E 0.96
E E 0.94
A E 0.83
I C 0.83
D C 0.94
D C 0.93
K C 0.75
E E 0.02
I E 0.85
I E 0.94
I E 0.92
E E 0.72
V E 0.13
D C 0.32
D C 0.71
K C 0.53
N C 0.37
I C 0.60
P C 0.76
T C 0.83
D C 0.74
P C 0.63
D C 0.47
K C 0.36
N C 0.15
V H 0.85
A H 0.90
G H 0.92
I H 0.96
V H 0.96
A H 0.96
K H 0.96
K H 0.96
M H 0.96
I H 0.94
D H 0.91
D H 0.67
F C 0.16
N C 0.91
I C 0.91
G C 0.92
K C 0.91
G C 0.86
V E 0.77
K E 0.90
I E 0.93
T E 0.95
I E 0.93
K E 0.82
K C 0.86
G C 0.94
V C 0.93
K C 0.77
A C 0.65
G C 0.46
S C 0.48
G C 0.63
L C 0.28
G H 0.53
S H 0.78
S H 0.87
A H 0.94
A H 0.96
S H 0.96
S H 0.97
A H 0.97
G H 0.96
T H 0.96
A H 0.96
Y H 0.95
A H 0.96
I H 0.95
N H 0.96
E H 0.94
L H 0.87
F H 0.50
K C 0.88
L C 0.91
N C 0.80
L C 0.89
D C 0.93
K H 0.82
L H 0.94
K H 0.95
L H 0.96
V H 0.96
D H 0.95
Y H 0.96
A H 0.95
S H 0.86
Y H 0.70
G H 0.21
E C 0.30
L C 0.02
A C 0.20
S E 0.07
S E 0.09
G C 0.44
A C 0.46
K C 0.40
H C 0.40
A C 0.33
D C 0.21
N C 0.24
V H 0.42
A H 0.74
P H 0.72
A H 0.83
I H 0.66
F H 0.33
G C 0.84
G C 0.87
F E 0.53
T E 0.85
M E 0.84
V E 0.88
T E 0.57
N C 0.02
Y C 0.83
E C 0.87
P C 0.78
L C 0.13
E E 0.37
V E 0.87
L E 0.88
H E 0.74
I C 0.11
P C 0.27
I C 0.75
D C 0.90
F C 0.85
K C 0.84
L C 0.61
D E 0.50
I E 0.88
L E 0.93
I E 0.95
A E 0.94
I E 0.73
P C 0.83
N C 0.93
I C 0.91
S C 0.90
I C 0.85
N C 0.83
T C 0.28
K H 0.76
E H 0.91
A H 0.90
R H 0.86
E H 0.76
I H 0.64
L H 0.22
P C 0.15
K C 0.06
A C 0.16
V C 0.89
G C 0.93
L H 0.76
K H 0.89
D H 0.95
L H 0.91
V H 0.93
N H 0.94
N H 0.94
V H 0.93
G H 0.92
K H 0.92
A H 0.96
C H 0.96
G H 0.96
M H 0.96
V H 0.96
Y H 0.95
A H 0.89
L H 0.92
Y H 0.67
N H 0.04
K C 0.95
D C 0.96
K H 0.92
S H 0.90
L H 0.97
F H 0.93
G H 0.94
R H 0.93
Y H 0.96
M H 0.86
M H 0.70
S H 0.28
D C 0.27
K C 0.17
V C 0.27
I H 0.13
E H 0.34
P H 0.46
V H 0.50
R H 0.37
G H 0.62
K H 0.34
L H 0.05
I C 0.57
P C 0.54
N C 0.43
Y H 0.83
F H 0.91
K H 0.92
I H 0.95
K H 0.95
E H 0.96
E H 0.94
V H 0.93
K H 0.71
D C 0.73
K C 0.95
V C 0.96
Y C 0.69
G E 0.83
I E 0.92
T E 0.79
I E 0.49
S C 0.65
G C 0.91
S C 0.90
G C 0.95
P C 0.91
S E 0.83
I E 0.92
I E 0.93
A E 0.94
F E 0.87
P E 0.58
K C 0.79
E C 0.50
E H 0.36
F H 0.61
I H 0.89
D H 0.89
E H 0.91
V H 0.96
E H 0.96
N H 0.96
I H 0.96
L H 0.95
R H 0.91
D H 0.65
Y H 0.07
Y C 0.03
E C 0.10
N E 0.23
T E 0.67
I E 0.81
R E 0.90
T E 0.71
E E 0.63
V C 0.09
G C 0.89
K C 0.89
G C 0.47
V E 0.27
E E 0.49
V E 0.46
V C 0.95
END

