
PFRMAT SS
TARGET T0115
AUTHOR 3670-4530-6947
METHOD Using neural net overrep-2500-IDaa13-5-10-7-10-5-10-11-ehl2-seeded9-stride-trained.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   10
METHOD	    7	   10
METHOD	    5	   10
METHOD	   11	    3 (1 EHL2 )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0115-family.a2m.gz
METHOD with weighted counts, using EntropyWeight(1.4 bits/column, 10)
METHOD The weighting was determined by the posterior distribution
METHOD after regularizing with /projects/compbio/lib/recode3.20comp.
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 21.56
METHOD
MODEL 1
M C 0.856
R C 0.716
E C 0.515
I E 0.609
M E 0.817
K E 0.944
V E 0.978
R E 0.985
V E 0.990
K E 0.981
A E 0.896
P E 0.545
C C 0.701
T C 0.701
S C 0.551
A C 0.561
N C 0.627
L C 0.678
G C 0.768
V C 0.798
G C 0.733
F C 0.510
D H 0.453
V H 0.576
F H 0.539
G H 0.500
L H 0.446
C C 0.430
L C 0.549
K C 0.861
E C 0.920
P C 0.931
Y C 0.938
D C 0.887
V E 0.872
I E 0.976
E E 0.990
V E 0.989
E E 0.954
A E 0.886
I E 0.579
D C 0.738
D C 0.860
K C 0.742
E E 0.622
I E 0.846
I E 0.865
I E 0.811
E E 0.566
V C 0.551
D C 0.625
D C 0.751
K C 0.780
N C 0.828
I C 0.805
P C 0.793
T C 0.801
D C 0.811
P C 0.827
D C 0.682
K H 0.541
N H 0.668
V H 0.938
A H 0.976
G H 0.992
I H 0.997
V H 0.998
A H 0.998
K H 0.998
K H 0.996
M H 0.992
I H 0.988
D H 0.974
D H 0.953
F H 0.849
N C 0.943
I C 0.923
G C 0.893
K C 0.931
G C 0.898
V E 0.654
K E 0.957
I E 0.994
T E 0.993
I E 0.972
K E 0.747
K C 0.688
G C 0.810
V C 0.773
K C 0.717
A C 0.660
G C 0.671
S C 0.650
G C 0.698
L C 0.621
G C 0.577
S H 0.725
S H 0.927
A H 0.992
A H 0.998
S H 0.999
S H 1.000
A H 1.000
G H 1.000
T H 1.000
A H 1.000
Y H 1.000
A H 0.999
I H 0.994
N H 0.985
E H 0.955
L H 0.908
F H 0.830
K C 0.712
L C 0.837
N C 0.951
L C 0.940
D C 0.929
K H 0.912
L H 0.943
K H 0.971
L H 0.972
V H 0.974
D H 0.980
Y H 0.976
A H 0.970
S H 0.965
Y H 0.932
G H 0.830
E H 0.712
L H 0.772
A H 0.707
S H 0.597
S C 0.523
G C 0.896
A C 0.811
K C 0.860
H C 0.931
A C 0.888
D C 0.851
N C 0.602
V H 0.814
A H 0.846
P H 0.882
A H 0.890
I H 0.812
F H 0.710
G C 0.683
G C 0.739
F E 0.585
T E 0.844
M E 0.923
V E 0.901
T E 0.794
N E 0.498
Y C 0.773
E C 0.917
P C 0.906
L C 0.599
E E 0.719
V E 0.817
L E 0.815
H E 0.776
I E 0.660
P C 0.542
I C 0.721
D C 0.808
F C 0.768
K C 0.781
L C 0.630
D E 0.763
I E 0.964
L E 0.976
I E 0.983
A E 0.948
I E 0.668
P C 0.760
N C 0.877
I C 0.733
S C 0.638
I C 0.686
N C 0.786
T H 0.833
K H 0.968
E H 0.982
A H 0.976
R H 0.974
E H 0.890
I H 0.875
L H 0.598
P H 0.538
K H 0.509
A C 0.701
V C 0.828
G C 0.863
L H 0.956
K H 0.973
D H 0.974
L H 0.947
V H 0.939
N H 0.946
N H 0.929
V H 0.969
G H 0.983
K H 0.988
A H 0.993
C H 0.997
G H 0.999
M H 0.999
V H 0.999
Y H 0.998
A H 0.997
L H 0.991
Y H 0.967
N H 0.809
K C 0.898
D C 0.818
K H 0.814
S H 0.889
L H 0.916
F H 0.898
G H 0.911
R H 0.896
Y H 0.843
M H 0.698
M H 0.737
S H 0.688
D H 0.528
K H 0.574
V H 0.621
I H 0.655
E H 0.685
P H 0.811
V H 0.802
R H 0.820
G H 0.840
K H 0.833
L H 0.806
I H 0.684
P H 0.808
N H 0.896
Y H 0.960
F H 0.982
K H 0.989
I H 0.990
K H 0.987
E H 0.979
E H 0.965
V H 0.931
K H 0.854
D H 0.709
K C 0.912
V C 0.783
Y E 0.519
G E 0.771
I E 0.867
T E 0.819
I E 0.702
S C 0.600
G C 0.742
S C 0.736
G C 0.673
P C 0.498
S E 0.391
I E 0.544
I E 0.530
A E 0.601
F E 0.511
P C 0.658
K C 0.818
E C 0.734
E C 0.659
F H 0.640
I H 0.895
D H 0.963
E H 0.982
V H 0.992
E H 0.994
N H 0.994
I H 0.990
L H 0.980
R H 0.963
D H 0.935
Y H 0.847
Y H 0.753
E H 0.733
N H 0.628
T H 0.571
I H 0.414
R C 0.365
T C 0.464
E C 0.621
V C 0.814
G C 0.909
K C 0.666
G E 0.532
V E 0.706
E E 0.759
V E 0.584
V C 0.698
END

