
PFRMAT AL
TARGET T0115
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  5
PARENT 1qr7_A
K 184    K  11
E 185    E  12
A 186    I  13
R 187    K  14
E 188    E  15
I 189    L  16
L 190    L  17
P 191    P  18
K 192    P  19
A 193    V  20
V 194    A  21
G 195    L  22
L 196    L  23
K 197    E  24
D 198    K  25
L 199    F  26
V 200    P  27
N 201    A  28
N 202    T  29
V 203    E  30
G 204    N  31
K 205    A  32
A 206    A  33
C 207    N  34
G 208    T  35
M 209    V  36
V 210    A  37
Y 211    H  38
A 212    A  39
L 213    R  40
Y 214    K  41
N 215    A  42
K 216    I  43
D 217    H  44
K 218    K  45
S 219    I  46
L 220    L  47
F 221    K  48
G 222    G  49
F 243    C  61
K 244    S  62
I 245    I  63
K 246    H  64
E 247    D  65
E 248    P  66
V 249    V  67
K 250    A  68
D 251    A  69
K 252    K  70
V 253    E  71
Y 254    Y  72
G 255    A  73
I 256    T  74
T 257    R  75
I 258    L  76
I 266    L  77
A 267    A  78
F 268    L  79
K 270    R  80
E 271    E  81
E 272    E  82
F 273    L  83
I 274    K  84
D 275    D  85
E 276    E  86
V 277    L  87
E 278    E  88
N 279    I  89
I 280    V  90
L 281    M  91
R 282    R  92
D 283    V  93
Y 284    Y  94
Y 285    F  95
E 286    E  96
N 287    K  97
T 288    P  98
R 290    R  99
T 291    T 100
E 292    T 101
V 293    V 102
G 294    G 103
K 295    K 105
G 296    G 106
V 297    L 107
TER
END

