
PFRMAT AL
TARGET T0115
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, SSEARCH, CAFASP are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  4
PARENT 1leh_A
G  94    G 173
L  95    L 174
G  96    A 175
S  97    V 176
S  98    S 177
A  99    V 178
A 100    Q 179
S 101    G 180
S 102    L 181
A 103    G 182
G 104    N 183
T 105    V 184
A 106    A 185
Y 107    K 186
A 108    A 187
I 109    L 188
N 110    C 189
E 111    K 190
K 114    K 191
L 115    L 192
N 116    N 193
L 117    T 194
D 118    E 195
K 119    G 196
L 120    A 197
K 121    K 198
L 122    L 199
V 123    V 200
D 124    D 203
Y 125    V 204
A 126    N 205
S 127    K 206
Y 128    A 207
G 129    A 208
E 130    V 209
L 131    S 210
A 132    A 211
S 133    A 212
S 134    V 213
G 135    A 214
A 136    E 215
K 137    E 216
H 138    G 217
A 139    A 218
D 140    D 219
N 141    A 220
V 142    V 221
A 143    A 222
P 144    P 223
A 145    A 225
I 146    I 226
F 147    Y 227
G 148    G 228
T 183    L 264
K 184    K 265
E 185    D 266
A 186    P 267
R 187    R 268
E 188    K 271
I 189    Y 272
L 190    L 273
P 191    H 274
K 192    E 275
A 193    I 278
V 194    V 279
G 195    Y 280
L 196    A 281
K 197    P 282
D 198    D 283
L 199    Y 284
V 200    V 285
N 201    I 286
N 202    N 287
V 203    A 288
G 204    G 289
K 205    G 290
A 206    V 291
C 207    I 292
G 208    N 293
M 209    V 294
V 210    A 295
Y 211    D 296
A 212    E 297
L 213    L 298
Y 214    Y 301
N 215    N 302
K 216    R 303
D 217    T 304
K 218    R 305
S 219    A 306
L 220    M 307
F 221    K 308
G 222    G 312
R 223    I 313
Y 224    Y 314
M 225    D 315
M 226    S 316
S 227    I 317
D 228    E 318
K 229    K 319
V 230    I 320
I 231    F 321
E 232    A 322
P 233    I 323
TER
END

