
PFRMAT AL
TARGET T0115
AUTHOR 3995-5176-6362
METHOD Chandonia & Cohen, mostly unpublished.
METHOD Uses a combination of PSI-BLAST scoring matrix
METHOD and Pred2ary secondary structure prediction.
METHOD Pred2ary page is http://www.cmpharm.ucsf.edu/~jmc/pred2ary/
METHOD The potential is documented in the paper by
METHOD Schwartz et al which is referenced on
METHOD my research page: http://www.cmpharm.ucsf.edu/~jmc/research.html
MODEL 1
PARENT 1ryp_A
M 1 A 10
R 2 G 11
E 3 Y 12
I 4 D 13
M 5 R 14
K 6 H 15
V 7 I 16
R 8 T 17
V 9 I 18
K 10 F 19
A 11 S 20
P 12 P 21
C 13 E 22
G 19 G 23
V 20 R 24
G 21 L 25
F 22 Y 26
D 23 Q 27
V 24 V 28
F 25 E 29
G 26 Y 30
L 27 A 31
C 28 F 32
L 29 K 33
K 30 A 34
E 31 T 35
P 32 N 36
Y 33 Q 37
D 34 T 38
V 35 N 39
I 36 I 40
E 37 N 41
V 38 S 42
E 39 L 43
A 40 A 44
I 41 V 45
D 42 R 46
D 43 G 47
K 44 K 48
E 45 D 49
I 46 C 50
I 47 T 51
I 48 V 52
E 49 V 53
V 50 I 54
D 51 S 55
D 52 Q 56
K 53 K 57
N 54 K 58
I 55 V 59
P 56 P 60
T 57 L 64
D 58 D 65
P 59 P 66
D 60 T 67
K 70 T 68
M 71 V 69
I 72 S 70
D 73 Y 71
D 74 I 72
F 75 F 73
N 76 C 74
I 77 I 75
G 78 S 76
K 79 R 77
G 80 T 78
V 81 I 79
K 82 G 80
I 83 M 81
T 84 V 82
I 85 V 83
K 86 N 84
G 92 G 85
S 93 P 86
G 94 I 87
L 95 P 88
G 96 D 89
S 97 A 90
S 98 R 91
A 99 N 92
A 100 A 93
S 101 A 94
S 102 L 95
A 103 R 96
G 104 A 97
T 105 K 98
A 106 A 99
Y 107 E 100
A 108 A 101
I 109 A 102
N 110 E 103
E 111 F 104
L 112 R 105
F 113 Y 106
K 114 K 107
L 115 Y 108
N 116 G 109
L 117 Y 110
D 118 D 111
K 119 A 118
L 120 K 119
K 121 R 120
L 122 M 121
V 123 A 122
D 124 N 123
Y 125 L 124
A 126 S 125
S 127 Q 126
Y 128 I 127
G 129 Y 128
E 130 T 129
L 131 Q 130
A 132 R 131
S 133 A 132
A 136 Y 133
K 137 M 134
H 138 R 135
A 139 P 136
D 140 L 137
N 141 G 138
V 142 V 139
A 143 I 140
F 150 L 141
T 151 T 142
M 152 F 143
V 153 V 144
T 154 S 145
N 155 V 146
Y 156 D 147
E 157 E 148
P 158 E 149
L 159 L 150
E 160 G 151
V 161 P 152
L 162 S 153
H 163 I 154
I 164 Y 155
P 165 K 156
I 166 T 157
D 167 D 158
F 168 P 159
K 169 A 160
L 170 G 161
D 171 Y 162
I 172 Y 163
L 173 V 164
I 174 G 165
A 175 Y 166
E 185 K 167
A 186 A 168
R 187 T 169
E 188 A 170
I 189 T 171
L 190 G 172
P 191 P 173
K 192 K 174
A 193 Q 175
K 197 Q 176
D 198 E 177
L 199 I 178
V 200 T 179
N 201 T 180
N 202 N 181
V 203 L 182
G 204 E 183
K 205 N 184
F 221 H 185
G 222 F 186
R 223 K 187
Y 224 K 188
M 225 S 189
M 226 K 190
S 227 I 191
D 228 D 192
K 229 H 193
V 230 I 194
I 231 N 195
E 232 E 196
P 233 E 197
V 234 S 198
R 235 W 199
G 236 E 200
K 237 K 201
L 238 V 202
N 241 V 203
Y 242 E 204
F 243 F 205
K 244 A 206
I 245 I 207
K 246 T 208
E 247 H 209
E 248 M 210
V 249 I 211
K 250 D 212
D 251 A 213
K 252 L 214
V 253 G 215
Y 254 V 225
G 255 G 226
I 256 V 227
T 257 A 228
I 258 T 229
S 259 K 230
G 260 D 231
S 264 K 232
I 265 F 233
I 266 F 234
A 267 T 235
F 268 L 236
P 269 S 237
I 274 A 238
D 275 E 239
E 276 N 240
V 277 I 241
E 278 E 242
N 279 E 243
I 280 R 244
L 281 L 245
R 282 V 246
D 283 A 247
Y 284 I 248
Y 285 A 249
E 286 E 250
N 287 Q 251
V 300 D 252
TER
END

