
PFRMAT AL
TARGET T0115
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1ake_A
V   81 M 1
K   82 R 2
I   83 I 3
T   84 I 4
I   85 L 5
K   86 L 6
K   87 G 7
G   88 A 8
A   91 P 9
G   92 G 10
S   93 A 11
G   94 G 12
L   95 K 13
G   96 G 14
S   97 T 15
S   98 Q 16
A   99 A 17
A  100 Q 18
S  101 F 19
I  109 I 20
N  110 M 21
E  111 E 22
L  112 K 23
F  113 Y 24
K  114 G 25
L  115 I 26
N  116 P 27
L  117 I 29
D  118 S 30
K  119 T 31
L  120 G 32
K  121 D 33
L  122 M 34
V  123 L 35
D  124 R 36
Y  125 A 37
A  126 A 38
S  127 V 39
Y  128 K 40
G  129 S 41
G  135 G 42
A  136 S 43
K  137 E 44
H  138 L 45
A  139 G 46
D  140 K 47
N  141 Q 48
V  142 A 49
A  143 K 50
P  144 D 51
A  145 I 52
I  146 M 53
F  147 D 54
G  148 A 55
G  149 G 56
S  180 K 57
I  181 L 58
N  182 V 59
T  183 T 60
K  184 D 61
E  185 E 62
A  186 L 63
R  187 V 64
E  188 I 65
I  189 A 66
L  190 L 67
L  196 V 68
K  197 K 69
D  198 E 70
L  199 R 71
V  200 I 72
N  201 A 73
N  202 T 89
V  203 I 90
G  204 P 91
K  205 Q 92
A  206 A 93
C  207 D 94
G  208 A 95
M  209 M 96
V  210 K 97
Y  211 E 98
A  212 A 99
L  213 G 100
Y  214 I 101
N  215 N 102
K  216 V 103
D  217 D 104
K  218 D 113
S  219 E 114
L  220 L 115
F  221 I 116
G  222 V 117
R  223 D 118
Y  224 R 119
M  225 I 120
M  226 V 121
S  227 K 157
D  228 D 158
K  229 D 159
V  230 Q 160
I  231 E 161
E  232 E 162
P  233 T 163
V  234 V 164
R  235 R 165
G  236 K 166
K  237 R 167
L  238 L 168
I  239 V 169
P  240 E 170
N  241 Y 171
Y  242 H 172
F  243 Q 173
K  244 M 174
I  245 Y 182
K  246 S 183
E  247 K 184
E  248 E 185
V  249 A 186
K  250 E 187
D  251 A 188
K  252 G 189
V  253 N 190
Y  254 T 191
G  255 K 192
I  256 A 194
T  257 K 195
I  258 V 196
S  259 D 197
G  260 G 198
S  261 T 199
G  262 K 200
P  263 P 201
I  274 V 202
D  275 A 203
E  276 E 204
V  277 V 205
E  278 R 206
N  279 A 207
I  280 D 208
L  281 L 209
R  282 E 210
D  283 K 211
Y  284 I 212
Y  285 L 213
E  286 G 214
TER
END

