
PFRMAT AL
TARGET T0115
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1pfk_A
M    5 M 0
K    6 I 1
V    7 K 2
R    8 K 3
V    9 I 4
K   10 G 5
A   11 V 6
P   12 L 7
C   13 T 8
T   14 S 9
S   15 G 10
A   16 G 11
N   17 D 12
L   18 L 28
G   19 T 29
V   20 E 30
G   21 G 31
F   22 L 32
D   23 E 33
V   24 V 34
F   25 M 35
G   26 G 36
L   27 I 37
C   28 Y 41
L   29 L 42
K   30 G 43
E   31 L 44
P   32 Y 45
Y   33 E 46
D   34 D 47
V   35 M 49
I   36 V 50
E   37 Q 51
V   38 L 52
E   39 D 53
A   40 R 54
I   41 V 57
D   42 S 58
D   43 D 59
K   44 M 60
E   45 I 61
I   46 N 62
I   47 R 63
I   48 G 64
E   49 G 65
V   50 T 66
D   51 F 67
D   52 L 68
K   53 G 69
N   54 S 70
I   55 A 71
P   56 R 72
T   57 F 73
D   58 P 74
P   59 E 75
D   60 D 78
K   61 E 79
N   62 N 80
V   63 I 81
G   65 R 82
I   66 A 83
V   67 V 84
A   68 A 85
K   69 I 86
K   70 E 87
M   71 N 88
I   72 L 89
D   73 K 90
D   74 K 91
F   75 R 92
N   76 G 93
I   77 I 94
G   78 D 95
K   79 A 96
G   80 L 97
V   81 V 98
K   82 V 99
I   83 I 100
T   84 T 125
I   85 I 126
K   86 D 127
K   87 N 128
G   88 D 129
V   89 I 130
K   90 K 131
A   91 T 133
G   92 D 134
S   93 Y 135
G   94 T 136
L   95 I 137
G   96 G 138
S   97 F 139
S   98 F 140
A   99 T 141
A  100 A 142
S  101 L 143
S  102 S 144
G  104 T 145
T  105 V 146
A  106 V 147
Y  107 E 148
A  108 A 149
I  109 I 150
N  110 D 151
E  111 R 152
L  112 L 153
L  120 R 154
K  121 D 155
L  122 T 156
V  123 S 157
D  124 S 158
Y  125 S 159
A  126 H 160
S  127 Q 161
Y  128 R 162
G  129 I 163
E  130 S 164
L  131 V 165
A  132 V 166
S  133 E 167
S  134 M 169
G  135 G 170
A  136 R 171
K  137 Y 172
H  138 C 173
A  139 G 174
D  140 D 175
N  141 T 177
V  142 L 178
A  143 A 179
P  144 A 180
A  145 A 181
I  146 I 182
F  147 A 183
G  148 G 184
G  149 G 185
L  170 C 186
D  171 E 187
I  172 F 188
L  173 V 189
I  174 V 190
A  175 V 191
P  177 P 192
N  178 E 193
I  179 V 194
S  180 E 195
I  181 F 196
N  182 S 197
R  187 R 198
E  188 E 199
I  189 D 200
L  190 L 201
L  196 V 202
K  197 N 203
D  198 E 204
L  199 I 205
V  200 K 206
N  201 A 207
N  202 G 208
V  203 I 209
G  204 A 210
K  205 K 211
A  206 G 212
C  207 K 213
G  208 K 214
M  209 A 216
V  210 I 217
Y  211 V 218
A  212 A 219
L  213 I 220
Y  214 T 221
N  215 E 222
K  216 H 223
D  217 D 226
K  218 V 227
S  219 D 228
L  220 E 229
F  221 L 230
G  222 A 231
R  223 H 232
Y  224 F 233
M  225 I 234
M  226 E 235
S  227 K 236
D  228 T 245
K  229 V 246
V  230 L 247
I  231 H 249
E  232 I 250
P  233 Q 251
V  234 R 252
R  235 G 253
G  236 G 254
K  237 S 255
L  238 P 256
I  239 V 257
P  240 P 258
Y  242 Y 259
F  243 D 260
K  244 R 261
I  245 I 262
K  246 L 263
E  248 A 264
V  249 S 265
K  250 R 266
D  251 M 267
K  252 G 268
V  253 A 269
Y  254 Y 270
G  255 A 271
I  256 I 272
T  257 L 275
I  258 L 276
S  259 A 277
G  260 G 278
S  261 Y 279
G  262 G 280
P  263 G 281
S  264 R 282
I  265 C 283
I  266 V 284
A  267 G 285
F  268 I 286
P  269 Q 287
K  270 N 288
E  271 E 289
E  272 D 298
F  273 A 299
I  274 I 300
D  275 E 301
E  276 N 302
V  277 M 303
E  278 K 304
N  279 D 310
I  280 W 311
L  281 L 312
R  282 K 316
D  283 K 317
Y  284 L 318
Y  285 Y 319
TER
END

