
PFRMAT AL
TARGET T0114
AUTHOR 8971-8833-9593
METHOD FFAS (http://bioinformatics.burnham-inst.org/FFAS/)
METHOD Fold & Function Assignment System A profile-profile alignment method.
METHOD 1) PSI-Blast is used to collect homologs
METHOD 2) The sequences of homologs are translated into a profile
METHOD    [The translation is not based on PSI-Blast approach]
METHOD 3) Translated profile is aligned against a profile database
MODEL  1
PARENT 1myn
D 6 D 1
C 7 C 2
N 8 L 3
E 9 S 4
N 10 G 5
S 11 R 6
Y 12 Y 7
L 13 C 11
E 14 A 12
I 15 V 13
H 16 W 14
N 17 D 15
N 18 N 16
E 19 E 17
G 20 T 18
R 21 C 19
D 22 R 20
T 23 R 21
L 24 V 22
C 25 C 23
F 26 K 24
A 27 E 25
N 28 E 26
A 29 G 27
G 30 R 28
T 31 S 29
M 32 S 30
P 33 G 31
V 34 H 32
A 35 C 33
I 36 S 34
Y 37 P 35
G 38 S 36
V 39 L 37
N 40 K 38
W 41 W 40
V 42 C 41
E 43 E 42
TER
END

