
PFRMAT AL
TARGET T0114
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  3
PARENT 1ryt
L  51    L 136
Q  52    D 137
F  53    F 138
Q  54    A 139
R  55    R 140
N  56    N 141
L  57    I 142
S  58    K 143
D  59    E 144
P  60    G 145
R  61    R 146
L  62    V 147
E  63    E 151
T  64    Q 152
I  65    A 153
T  66    T 154
K  69    K 155
W  70    W 156
G  71    R 157
S  72    C 158
W  73    R 159
N  74    N 160
P  75    C 161
G  76    G 162
H  77    Y 163
I  78    V 164
H  79    H 165
E  80    E 166
TER
END

