
PFRMAT AL
TARGET T0114
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  2
PARENT 1sm3_H
I   2    I  69
N   3    S  70
R   4    R  71
T   5    D  72
D   6    D  73
C   7    S  74
N   8    K  75
E   9    S  76
N  10    S  77
S  11    V  78
Y  12    Y  79
L  13    L  80
E  14    Q  81
G  20    R  83
R  21    E  85
D  22    D  86
T  23    T  87
L  24    G  88
C  25    I  89
F  26    Y  90
A  27    Y  91
N  28    C  92
A  29    T  93
G  30    G  94
T  31    V  95
M  32    G  96
P  33    Q  97
V  34    F  98 
A  35    A 101
I  36    Y 102
Y  37    W 103
G  38    G 104
TER
END

