
PFRMAT AL
TARGET T0114
AUTHOR 5505-7671-7042
REMARK No remark
METHOD We align a target sequence with structurally aligned sequences
METHOD (i.e., multiple structure alignment), where a multiple structure
METHOD alignment is computed from results of pairwise structure alignments
METHOD for similar structures. The method has appeared in the following paper:
METHOD 
METHOD [1] Tatsuya Akutsu, Kim Lan Sim: Protein Threading Based on Multiple
METHOD     Protein Structure Alignment, Genome Informatics 1999, 23--29.
METHOD 
METHOD Results from PSI-BLAST, Clustal-W, CAFASP servers are also used.
METHOD Human knowledge is also used to find template structures and
METHOD to refine alignments.
MODEL  1
PARENT 1xnd
I   2    I   3
N   3    G   4
R   4    P   5
T   5    G   6
D   6    T   7
C   7    G   8
N   8    Y   9
E   9    S  10
N  10    N  11
S  11    G  12
Y  12    Y  13
L  13    Y  14
E  14    Y  15
I  15    S  16
H  16    Y  17
N  17    W  18
N  18    N  19
E  19    D  20
G  20    G  21
R  21    H  22
D  22    A  23
T  23    G  24
L  24    V  25
C  25    T  26
F  26    Y  27
A  27    T  28
N  28    N  29
A  29    G  30
G  30    G  31
T  31    G  32
A  35    G  33
I  36    S  34
Y  37    F  35
G  38    T  36
V  39    V  37
N  40    N  38
W  41    W  39
V  42    S  40
E  43    N  41
S  44    S  42
G  45    G  43
N  46    N  44
N  47    F  45
V  48    V  46
V  49    A  47
T  50    G  48
L  51    K  49
Q  52    G  50
F  53    W  51
Q  54    Q  52
P  60    P  53
R  61    G  54
L  62    T  55
E  63    K  56
T  64    N  57
I  65    K  58
T  66    V  59
L  67    I  60
Q  68    N  61
K  69    F  62
W  70    S  63
G  71    G  64
S  72    S  65
W  73    Y  66
N  74    N  67
P  75    P  68
G  76    N  69
H  77    G  70
I  78    N  71
L  82    S  72
S  83    Y  73
I  84    L  74
R  85    S  75
I  86    I  76
Y  87    Y  77
TER
END

