
PFRMAT AL
TARGET T0114
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 5
PARENT 1cyg
E    9 E 492
N   10 S 493
S   11 T 494
Y   12 P 495
L   13 I 496
E   14 I 497
I   15 G 498
H   16 H 499
N   17 D 514
N   18 G 515
E   19 E 516
G   20 G 517
R   21 F 518
D   22 G 519
T   23 T 520
N   28 N 521
A   29 T 522
G   30 G 523
T   31 T 524
M   32 V 525
P   33 K 526
V   34 F 527
A   35 G 528
I   36 T 529
Y   37 T 530
G   38 A 531
V   39 A 532
N   40 N 533
W   41 V 534
V   42 V 535
E   43 S 536
S   44 W 537
G   45 S 538
N   46 N 539
N   47 N 540
V   48 Q 541
V   49 I 542
T   50 V 543
L   51 V 544
Q   52 A 545
F   53 V 546
R   55 P 547
N   56 N 548
L   57 V 549
S   58 S 550
P   60 P 551
R   61 G 552
L   62 K 553
E   63 Y 554
T   64 N 555
I   65 I 556
T   66 T 557
L   67 V 558
Q   68 Q 559
K   69 S 560
G   71 S 561
S   72 S 562
W   73 G 563
N   74 Q 564
P   75 T 565
G   76 S 566
H   77 A 567
I   78 A 568
H   79 Y 569
E   80 D 570
I   81 N 571
L   82 F 572
S   83 E 573
I   84 V 574
TER
END

