
PFRMAT AL
TARGET T0114
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 4
PARENT 1d2e_A
R    4 T 251
T    5 R 252
D    6 D 253
C    7 L 254
N    8 E 255
E    9 K 256
N   10 P 257
S   11 F 258
Y   12 L 259
L   13 L 260
E   14 S 264
I   15 V 265
H   16 Y 266
N   17 S 267
N   18 I 268
E   19 P 269
G   20 G 270
R   21 R 271
D   22 G 272
T   23 T 273
L   24 V 274
C   25 V 275
F   26 T 276
A   27 G 277
N   28 E 280
A   29 R 281
G   30 G 282
T   31 I 283
M   32 L 284
P   33 K 285
V   34 T 301
A   35 V 302
I   36 V 303
Y   37 T 304
G   38 G 305
V   39 I 306
N   40 E 307
W   41 M 308
V   42 A 316
E   43 E 317
S   44 A 318
G   45 G 319
N   46 D 320
N   47 N 321
V   48 L 322
V   49 G 323
T   50 A 324
L   51 L 325
Q   54 V 326
R   55 R 327
N   56 G 328
L   57 L 329
S   58 K 330
D   59 D 333
P   60 L 334
R   61 R 335
E   63 R 336
T   64 G 337
I   65 L 338
T   66 V 339
L   67 M 340
Q   68 A 341
K   69 K 342
W   70 P 343
G   71 G 344
S   72 S 345
W   73 I 346
N   74 Q 347
P   75 P 348
TER
END

