
PFRMAT AL
TARGET T0114
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 3
PARENT 2fnb_A
I    2 M 1
N    3 R 2
R    4 G 3
T    5 S 4
D    6 E 5
C    7 V 6
N    8 P 7
E    9 Q 8
N   10 L 9
S   11 T 10
Y   12 D 11
L   13 L 12
E   14 S 13
I   15 F 14
H   16 V 15
N   17 D 16
N   18 I 17
E   19 T 18
G   20 D 19
R   21 S 20
D   22 S 21
T   23 G 23
L   24 L 24
C   25 R 25
F   26 W 26
A   27 T 27
N   28 P 28
A   29 L 29
G   30 N 30
T   31 S 31
M   32 S 32
P   33 T 33
V   34 I 34
A   35 I 35
I   36 G 36
Y   37 Y 37
G   38 R 38
V   39 I 39
N   40 T 40
W   41 V 41
V   42 V 42
E   43 A 43
S   44 A 44
G   45 G 45
N   46 E 46
N   47 G 47
V   48 I 48
V   49 P 49
T   50 I 50
L   51 F 51
Q   52 E 52
F   53 D 53
Q   54 F 54
R   55 V 55
N   56 D 56
L   57 S 57
S   58 S 58
D   59 V 59
P   60 G 60
R   61 Y 61
L   62 Y 62
E   63 T 63
T   64 V 64
I   65 T 65
T   66 G 66
L   67 L 67
Q   68 E 68
K   69 P 69
W   70 G 70
G   71 G 83
S   72 G 84
W   73 E 85
N   74 S 86
P   75 A 87
G   76 P 88
H   77 T 89
I   78 T 90
H   79 L 91
E   80 T 92
I   81 Q 93
L   82 Q 94
S   83 T 95
TER
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