
PFRMAT AL
TARGET T0114
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 2
PARENT 1svb
N    3 T 303
R    4 Y 304
T    5 T 305
D    6 M 306
C    7 C 307
N    8 D 308
E    9 K 309
N   10 T 310
S   11 K 311
Y   12 F 312
L   13 K 315
E   14 R 316
I   15 A 317
H   16 P 318
N   17 T 319
N   18 D 320
E   19 S 321
G   20 G 322
R   21 H 323
D   22 D 324
T   23 T 325
L   24 V 326
C   25 M 328
F   26 E 329
A   27 V 330
N   28 T 331
A   29 S 333
G   30 G 334
T   31 T 335
M   32 K 336
P   33 P 337
V   34 C 338
A   35 R 339
I   36 I 340
Y   37 P 341
V   39 V 342
N   40 R 343
W   41 A 344
V   42 V 345
E   43 A 346
S   44 H 347
G   45 G 348
N   46 S 349
N   47 P 350
V   48 D 351
V   49 V 352
T   50 N 353
Q   52 V 354
F   53 A 355
Q   54 M 356
R   55 L 357
N   56 I 358
L   57 T 359
S   58 P 360
D   59 N 361
P   60 P 362
R   61 T 363
L   62 I 364
E   63 E 365
T   64 D 380
I   65 N 381
T   66 I 382
L   67 I 383
Q   68 Y 384
K   69 V 385
W   70 G 386
G   71 E 387
S   72 L 388
W   73 S 389
N   74 H 390
P   75 Q 391
G   76 W 392
H   77 F 393
I   78 Q 394
H   79 K 395
TER
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