
PFRMAT AL
TARGET T0114
AUTHOR 5619-7722-4694
REMARK Predictor remarks
METHOD Automated CAFASP2 submission
METHOD see http://cafasp.bioinfo.pl/server/3dpssm.html
METHOD and Kelley LA, MacCallum RM & Sternberg MJE (2000).
METHOD     Enhanced Genome Annotation using Structural Profiles
METHOD     in the Program 3D-PSSM. J. Mol. Biol. 299(2), 501-522.
METHOD
METHOD Major differences from the publication:
METHOD
METHOD Fold library based on SCOP 1.50 - no more than 70% pairwise
METHOD identity (astral-scopdom-seqres-sel-gs-bib-70-1.50).
METHOD
METHOD Fold library continuously updated from PDB, using 70%
METHOD identity cut-off and overlap criteria.
METHOD
METHOD The 3D-PSSM E-value is multiplied by the SAWTED E-value
METHOD if the latter is less than 0.2 and folds with SAWTED E-values
METHOD less than 0.2 do not belong to different superfamilies.
METHOD
MODEL 1
PARENT 1clc
M    1 I 35
I    2 V 39
N    3 S 40
R    4 A 41
T    5 A 42
D    6 K 43
C    7 I 44
N    8 T 45
E    9 E 46
N   10 N 47
S   11 S 52
Y   12 R 53
L   13 I 54
E   14 R 55
I   15 L 56
H   16 N 57
N   17 S 58
N   18 N 64
E   19 H 65
G   20 S 66
R   21 K 67
D   22 K 68
T   23 A 69
L   24 T 70
C   25 I 71
F   26 A 72
A   27 A 73
N   28 N 74
A   29 C 75
G   30 S 76
T   31 T 77
I   36 F 78
Y   37 Y 79
G   38 V 80
V   39 V 81
N   40 K 82
E   43 E 83
S   44 D 84
G   45 G 85
N   46 T 86
N   47 I 87
V   48 V 88
V   49 Y 89
T   50 T 90
L   51 G 91
Q   52 T 92
F   53 A 93
Q   54 T 94
R   55 S 95
N   56 M 96
L   57 F 97
S   58 D 98
D   59 N 99
P   60 D 100
R   61 T 101
L   62 K 102
E   63 E 103
T   64 T 104
I   65 V 105
T   66 Y 106
L   67 I 107
Q   68 A 108
K   69 D 109
W   70 F 110
G   71 S 111
S   72 S 112
W   73 V 113
N   74 N 114
P   75 P 124
G   76 G 125
I   78 V 126
H   79 G 127
E   80 K 128
I   81 S 129
L   82 V 130
S   83 N 131
I   84 F 132
R   85 K 133
I   86 I 134
TER
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